Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,545,947	G→A	G32S (GGT→AGT)	fimG →	FimG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,545,947	0	G	A	100.0%	1013.2 / NA	258	G32S (GGT→AGT)	fimG	FimG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (112/146); total (112/146)

Only 100 of 260 total aligned reads displayed.

AAATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACGGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCC  >  NC_000913/4545857‑4546036

  aTGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTaa                                                                                       <  1:1061326/93‑1 (MQ=255)

   tGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAg                                                                                      <  2:2398862/93‑1 (MQ=255)

     gTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGgt                                                                                    >  1:3402636/1‑93 (MQ=255)

      tGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGgtc                                                                                   <  1:3617123/93‑1 (MQ=255)

        cAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCCGCCGATGTCACCATCACGGTGAACAGGAAGgtcgt                                                                                 >  2:2257168/1‑93 (MQ=255)

        cAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGgtcgt                                                                                 <  2:4615556/93‑1 (MQ=255)

          aaCGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGtcgtcg                                                                               <  1:3149306/93‑1 (MQ=255)

          aaCGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCAGCACGGTGAACAGTAAGGtcgtcg                                                                               >  2:1032244/1‑93 (MQ=255)

             gtgtgtATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCa                                                                            <  1:4702153/93‑1 (MQ=255)

             gTGGGGATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCa                                                                            <  2:1227109/93‑1 (MQ=255)

               gggTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCaaa                                                                          >  2:4384764/1‑93 (MQ=255)

               gggTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCaaa                                                                          >  2:5885092/1‑93 (MQ=255)

                ggTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAAc                                                                         >  1:3993880/1‑93 (MQ=255)

                ggTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAAc                                                                         <  1:2251696/93‑1 (MQ=255)

                ggTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAAc                                                                         >  2:5979211/1‑93 (MQ=255)

                 gtatgtatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAAcc                                                                        <  1:535866/93‑1 (MQ=255)

                  tatgtatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGGACAGTAAGGTCGTCGCCCAACCg                                                                       >  2:4129573/1‑93 (MQ=255)

                  tatgtatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCg                                                                       >  2:5750903/1‑93 (MQ=255)

                  tatgtatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCg                                                                       >  2:4070126/1‑93 (MQ=255)

                  tatgtatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCg                                                                       >  2:1753152/1‑93 (MQ=255)

                      tatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTa                                                                   <  1:501714/93‑1 (MQ=255)

                      tatTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTa                                                                   <  1:4372763/93‑1 (MQ=255)

                      tatTGGCGGCAATATGGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTa                                                                   <  1:5423/93‑1 (MQ=255)

                         tGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACgg                                                                <  1:942266/93‑1 (MQ=255)

                         tGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACgg                                                                <  1:3892869/93‑1 (MQ=255)

                          ggcggcAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGt                                                               <  1:1788410/93‑1 (MQ=255)

                           gcggcAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGtt                                                              <  2:1273504/93‑1 (MQ=255)

                             ggcAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTc                                                            >  2:1805976/1‑93 (MQ=255)

                             ggcAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTc                                                            >  1:3516486/1‑93 (MQ=255)

                              gcAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTcc                                                           >  1:2086329/1‑93 (MQ=255)

                               cAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTcca                                                          >  2:5730316/1‑93 (MQ=255)

                                aaTATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTccac                                                         >  2:2147872/1‑93 (MQ=255)

                                aaTATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTccac                                                         >  2:2189812/1‑93 (MQ=255)

                                  tatTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTccacca                                                       <  1:1216696/93‑1 (MQ=255)

                                  tatTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTccacca                                                       <  1:3298352/93‑1 (MQ=255)

                                   atTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTccaccac                                                      >  2:4957746/1‑93 (MQ=255)

                                      ggCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCaa                                                   <  1:1294554/93‑1 (MQ=255)

                                      ggCGCTCGCAAGTGCGACGAGACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCaa                                                   <  1:6303130/93‑1 (MQ=255)

                                         gcTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGc                                                <  2:85278/93‑1 (MQ=255)

                                          cTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGcc                                               >  1:5749987/1‑93 (MQ=255)

                                          cTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGcc                                               <  1:6149593/93‑1 (MQ=255)

                                          cTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGcc                                               >  2:5524362/1‑93 (MQ=255)

                                          cTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGcc                                               <  1:1946409/93‑1 (MQ=255)

                                           tCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCa                                              <  2:4438087/93‑1 (MQ=255)

                                            cGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCAc                                             <  2:1311302/93‑1 (MQ=255)

                                                aGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGtt                                         <  2:3788620/93‑1 (MQ=255)

                                                aGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGtt                                         >  2:293399/1‑93 (MQ=255)

                                                   gCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAt                                      <  2:6344851/93‑1 (MQ=255)

                                                    cgacgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtc                                     <  1:1501448/93‑1 (MQ=255)

                                                     gacgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtct                                    <  1:1459106/93‑1 (MQ=255)

                                                     gacgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtct                                    <  2:4038375/93‑1 (MQ=255)

                                                     gacgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtct                                    <  1:652315/93‑1 (MQ=255)

                                                     gacgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtct                                    <  2:2723076/93‑1 (MQ=255)

                                                      acgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtctc                                   <  2:2966097/93‑1 (MQ=255)

                                                      acgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtctc                                   <  2:1652516/93‑1 (MQ=255)

                                                      acgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtctc                                   <  1:6412640/93‑1 (MQ=255)

                                                      acgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAtctc                                   >  1:5646776/1‑93 (MQ=255)

                                                       cgaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCg                                  <  1:4108722/93‑1 (MQ=255)

                                                        gaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCgg                                 <  2:2394052/93‑1 (MQ=255)

                                                        gaTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCgg                                 >  1:2410436/1‑93 (MQ=255)

                                                        gaTACAGGCAGCCGATGTCACCATAACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCgg                                 >  1:4612391/1‑93 (MQ=255)

                                                         aTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGc                                <  2:3126194/93‑1 (MQ=255)

                                                         aTACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGc                                >  2:2055206/1‑93 (MQ=255)

                                                             aGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATc                            >  1:5684059/1‑93 (MQ=255)

                                                             aGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATc                            >  2:3557145/1‑93 (MQ=255)

                                                               gCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCtt                          <  1:5534041/93‑1 (MQ=255)

                                                               gCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCtt                          <  2:6261496/93‑1 (MQ=255)

                                                               gCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCtt                          <  2:1968150/93‑1 (MQ=255)

                                                               gCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCtt                          <  1:2809718/93‑1 (MQ=255)

                                                                cAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCttt                         >  2:4543298/1‑93 (MQ=255)

                                                                  gCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTAt                       >  2:4659384/1‑93 (MQ=255)

                                                                    cGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTc                     <  1:517254/93‑1 (MQ=255)

                                                                    cGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTc                     >  1:4239124/1‑93 (MQ=255)

                                                                     gATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCt                    >  1:3370738/1‑93 (MQ=255)

                                                                     gATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCt                    >  2:5390124/1‑93 (MQ=255)

                                                                     gATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCt                    >  1:1232731/1‑93 (MQ=255)

                                                                      aTGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCtt                   <  2:3019487/93‑1 (MQ=255)

                                                                       tGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCttt                  <  2:5278813/93‑1 (MQ=255)

                                                                       tGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCttt                  <  1:5985691/93‑1 (MQ=255)

                                                                        gTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTc                 >  2:5305740/1‑93 (MQ=255)

                                                                         tCACCATCACGGTGAACAGTAAGGTCGTGGCCAAACCGTGTACGGGTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCa                >  2:3085938/1‑93 (MQ=255)

                                                                          cACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAg               <  1:3002000/93‑1 (MQ=255)

                                                                            ccATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTc             >  2:6079205/1‑93 (MQ=255)

                                                                            ccATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTc             >  2:3984911/1‑93 (MQ=255)

                                                                             cATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCt            <  1:2453507/93‑1 (MQ=255)

                                                                             cATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCt            <  1:4862286/93‑1 (MQ=255)

                                                                              aTCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCtt                   <  2:3883160/85‑1 (MQ=255)

                                                                              aTCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCtt           <  2:1561374/93‑1 (MQ=255)

                                                                               tCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTa          <  1:1141325/93‑1 (MQ=255)

                                                                                cACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTAt         <  1:4943228/93‑1 (MQ=255)

                                                                                 aCGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATg        >  2:5047518/1‑93 (MQ=255)

                                                                                   ggTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTc      <  2:5592627/93‑1 (MQ=255)

                                                                                   ggTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTc      <  1:1604755/93‑1 (MQ=255)

                                                                                    gTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCTACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCt     <  2:4526365/93‑1 (MQ=255)

                                                                                    gTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCt     <  1:3875060/93‑1 (MQ=255)

                                                                                     tGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTg    <  2:3280344/93‑1 (MQ=255)

                                                                                      gAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGc   <  2:4818766/93‑1 (MQ=255)

                                                                                      gAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGc   <  1:2694842/93‑1 (MQ=255)

                                                                                      gAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGc   <  1:2916721/93‑1 (MQ=255)

                                                                                       aaCAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGcc  <  1:2972718/93‑1 (MQ=255)

AAATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACGGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCC  >  NC_000913/4545857‑4546036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGAAATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACGGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGGG  >  NC_000913/4545855‑4546040

TGAAATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAG                                                                                              >  SRR4302534.3068128/1‑94 (MQ=60)

  AAATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTA                                                                                            >  SRR4302534.2871468/1‑94 (MQ=60)

   AATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAA                                                                                           <  SRR4302534.3470054/94‑1 (MQ=60)

   AATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAA                                                                                           >  SRR4302534.5589751/1‑94 (MQ=60)

    ATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAG                                                                                          <  SRR4302534.1088833/94‑1 (MQ=60)

      GGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGT                                                                                        >  SRR4302534.3494000/1‑94 (MQ=60)

        TGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCG                                                                                      <  SRR4302534.3714371/94‑1 (MQ=60)

        TCCAAGCGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCG                                                                                      <  SRR4302534.5516818/94‑1 (MQ=60)

          CAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTC                                                                                    <  SRR4302534.5849474/94‑1 (MQ=60)

            AACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGGACAGTAAGGTCGTCGC                                                                                  >  SRR4302534.342567/1‑94 (MQ=60)

            AACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGC                                                                                  <  SRR4302534.3232165/94‑1 (MQ=60)

            AACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGC                                                                                  >  SRR4302534.44411/1‑94 (MQ=60)

            AACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGGCGTCGC                                                                                  >  SRR4302534.1255644/1‑94 (MQ=60)

             ACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCC                                                                                 >  SRR4302534.2584109/1‑94 (MQ=60)

             ACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCC                                                                                 <  SRR4302534.672867/94‑1 (MQ=60)

             ACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCC                                                                                 <  SRR4302534.3627952/94‑1 (MQ=60)

             ACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGGGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCC                                                                                 <  SRR4302534.1983294/94‑1 (MQ=60)

              CGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCA                                                                                <  SRR4302534.4916386/94‑1 (MQ=60)

               GTGTGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAA                                                                               <  SRR4302534.4829806/94‑1 (MQ=60)

                TGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAA                                                                              >  SRR4302534.1441020/1‑94 (MQ=60)

                TGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAA                                                                              >  SRR4302534.6311941/1‑94 (MQ=60)

                 GGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAAC                                                                             <  SRR4302534.2473257/94‑1 (MQ=60)

                 GGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAAC                                                                             >  SRR4302534.4100792/1‑94 (MQ=60)

                  GGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACC                                                                            <  SRR4302534.2311388/94‑1 (MQ=60)

                   GTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCG                                                                           <  SRR4302534.549157/94‑1 (MQ=60)

                   GTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCG                                                                           >  SRR4302534.4293212/1‑94 (MQ=60)

                    TATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGT                                                                          >  SRR4302534.1906487/1‑94 (MQ=60)

                    TATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGT                                                                          <  SRR4302534.2871475/94‑1 (MQ=60)

                     ATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTG                                                                         >  SRR4302534.4083531/1‑94 (MQ=60)

                       GTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTA                                                                       <  SRR4302534.6528418/94‑1 (MQ=60)

                       GTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTA                                                                       <  SRR4302534.65984/94‑1 (MQ=60)

                        TATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTAC                                                                      <  SRR4302534.4490607/94‑1 (MQ=60)

                        TATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTAC                                                                      <  SRR4302534.4769975/94‑1 (MQ=60)

                        TATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTAC                                                                      <  SRR4302534.514204/94‑1 (MQ=60)

                        TATTGGCGGCAATATGGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTAC                                                                      <  SRR4302534.5572/94‑1 (MQ=60)

                           TGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGT                                                                   <  SRR4302534.3997363/94‑1 (MQ=60)

                           TGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGT                                                                   >  SRR4302534.204967/1‑94 (MQ=60)

                           TGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGT                                                                   <  SRR4302534.454843/94‑1 (MQ=60)

                           TGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGT                                                                   <  SRR4302534.966236/94‑1 (MQ=60)

                            GGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTT                                                                  <  SRR4302534.1834859/94‑1 (MQ=60)

                              CGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTC                                                                >  SRR4302534.3611071/1‑94 (MQ=60)

                               GGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCC                                                               >  SRR4302534.1094626/1‑94 (MQ=60)

                               GGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCC                                                               >  SRR4302534.2141006/1‑94 (MQ=60)

                                 CAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCAC                                                             >  SRR4302534.5826015/1‑94 (MQ=60)

                                    TATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCAC                                                          <  SRR4302534.1248720/94‑1 (MQ=60)

                                    TATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCAC                                                          <  SRR4302534.3386370/94‑1 (MQ=60)

                                        GGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAAT                                                      <  SRR4302534.1328643/94‑1 (MQ=60)

                                        GGCGCTCGCAAGTGCGACGAGACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAAT                                                      <  SRR4302534.6473585/94‑1 (MQ=60)

                                          CGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGC                                                    >  SRR4302534.5368467/1‑94 (MQ=60)

                                           GCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCC                                                   >  SRR4302534.5905908/1‑94 (MQ=60)

                                           GCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCC                                                   <  SRR4302534.4427141/94‑1 (MQ=60)

                                           GCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCC                                                   >  SRR4302534.5732403/1‑94 (MQ=60)

                                           GCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCC                                                   >  SRR4302534.6397421/1‑94 (MQ=60)

                                            CTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCA                                                  <  SRR4302534.1997353/94‑1 (MQ=60)

                                            CTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCA                                                  <  SRR4302534.6316876/94‑1 (MQ=60)

                                            CTCGCAAGTACGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCA                                                  >  SRR4302534.6450621/1‑94 (MQ=60)

                                             TCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCAC                                                 <  SRR4302534.3347503/94‑1 (MQ=60)

                                              CTCAAGTGCGACAATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACG                                                <  SRR4302534.2529427/94‑1 (MQ=60)

                                                CAAGTGCGACGATACAGGCAGCCTATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGCTTTCCACCACCAATGCCACGGT                                              <  SRR4302534.3221837/94‑1 (MQ=60)

                                                CAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGT                                              >  SRR4302534.1295542/1‑94 (MQ=60)

                                                 AGGTGCGACGATACAGGCAGCCGATGTCGCCATCACGGTGAACATTAAGGTCGTCGCCAACCCGTGTACGGTTTCCACCGCCAATGCCGCGGTT                                             <  SRR4302534.1185096/94‑1 (MQ=60)

                                                 AAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTT                                             <  SRR4302534.3826543/94‑1 (MQ=60)

                                                 AAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTT                                             <  SRR4302534.3021977/94‑1 (MQ=60)

                                                 AAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTT                                             >  SRR4302534.143247/1‑94 (MQ=60)

                                                   GTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGA                                           <  SRR4302534.3026113/94‑1 (MQ=60)

                                                    TGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGAT                                          <  SRR4302534.4053211/94‑1 (MQ=60)

                                                     GCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATC                                         >  SRR4302534.4146861/1‑94 (MQ=60)

                                                     GCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATC                                         >  SRR4302534.3816004/1‑94 (MQ=60)

                                                      CGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCT                                        <  SRR4302534.5079106/94‑1 (MQ=60)

                                                      CGACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCT                                        <  SRR4302534.1540963/94‑1 (MQ=60)

                                                       GACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTC                                       >  SRR4302534.5799628/1‑94 (MQ=60)

                                                       GACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTC                                       <  SRR4302534.2489826/94‑1 (MQ=60)

                                                       GACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTC                                       <  SRR4302534.1497482/94‑1 (MQ=60)

                                                       GACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTC                                       <  SRR4302534.668168/94‑1 (MQ=60)

                                                        ACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCG                                      <  SRR4302534.6585672/94‑1 (MQ=60)

                                                        ACGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGATTCCACCACCGATGACACGGTTGATCTCG                                      >  SRR4302534.2310654/1‑94 (MQ=60)

                                                         CGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGG                                     <  SRR4302534.4219239/94‑1 (MQ=60)

                                                         CGATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGG                                     >  SRR4302534.2474536/1‑94 (MQ=60)

                                                         CGATACAGGCAGCCGATGTCACCATAACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGG                                     >  SRR4302534.4737569/1‑94 (MQ=60)

                                                          GATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGC                                    <  SRR4302534.4302726/94‑1 (MQ=60)

                                                           ATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCG                                   <  SRR4302534.5666961/94‑1 (MQ=60)

                                                           ATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCG                                   <  SRR4302534.6601361/94‑1 (MQ=60)

                                                           ATACAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGGTGATCTCGGCG                                   >  SRR4302534.1552244/1‑94 (MQ=60)

                                                              CAGTCAGCCGATGGCACCATCACGGTGAACAGTAAGTTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATC                                <  SRR4302534.1210393/94‑1 (MQ=60)

                                                              CAGGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATC                                >  SRR4302534.5837987/1‑94 (MQ=60)

                                                               AGGCAGCGGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCT                               <  SRR4302534.5428778/94‑1 (MQ=60)

                                                                GGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTT                              <  SRR4302534.6082918/94‑1 (MQ=60)

                                                                GGCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTT                              <  SRR4302534.505144/94‑1 (MQ=60)

                                                                 GCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTT                             <  SRR4302534.5683416/94‑1 (MQ=60)

                                                                 GCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTT                             <  SRR4302534.2883595/94‑1 (MQ=60)

                                                                 GCAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTT                             >  SRR4302534.969457/1‑94 (MQ=60)

                                                                  CAGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTA                            >  SRR4302534.2125094/1‑94 (MQ=60)

                                                                   AGCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTAT                           >  SRR4302534.5225886/1‑94 (MQ=60)

                                                                    GCCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATT                          >  SRR4302534.1559855/1‑94 (MQ=60)

                                                                     CCGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTC                         >  SRR4302534.4353412/1‑94 (MQ=60)

                                                                      CGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCT                        >  SRR4302534.1265213/1‑94 (MQ=60)

                                                                      CGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCT                        >  SRR4302534.3461046/1‑94 (MQ=60)

                                                                      CGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCT                        <  SRR4302534.5098233/94‑1 (MQ=60)

                                                                      CGATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCT                        <  SRR4302534.530109/94‑1 (MQ=60)

                                                                       GATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTT                       <  SRR4302534.3475121/94‑1 (MQ=60)

                                                                       GATGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTT                       >  SRR4302534.1266617/1‑94 (MQ=60)

                                                                         TGTCACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTC                     <  SRR4302534.6148289/94‑1 (MQ=60)

                                                                            CACCATCACGGTGAACAGTAAGGTCGTCGCCAACCCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGT                  <  SRR4302534.1734972/94‑1 (MQ=60)

                                                                            CACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGT                  <  SRR4302534.1515838/94‑1 (MQ=60)

                                                                            CACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGT                  <  SRR4302534.3080520/94‑1 (MQ=60)

                                                                             ACCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTC                 >  SRR4302534.3241051/1‑94 (MQ=60)

                                                                              CCATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCT                <  SRR4302534.3184347/94‑1 (MQ=60)

                                                                               CATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTaatctat               >  SRR4302534.3987413/1‑87 (MQ=60)

                                                                               CATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTT               <  SRR4302534.2518704/94‑1 (MQ=60)

                                                                               CATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTT               <  SRR4302534.2886896/94‑1 (MQ=60)

                                                                               CATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTT               <  SRR4302534.4994194/94‑1 (MQ=60)

                                                                                ATCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTA              <  SRR4302534.5878331/94‑1 (MQ=60)

                                                                                 TCACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTAT             <  SRR4302534.1171208/94‑1 (MQ=60)

                                                                                  CACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATG            >  SRR4302534.3060005/1‑94 (MQ=60)

                                                                                  CACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATG            >  SRR4302534.3591965/1‑94 (MQ=60)

                                                                                  CACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATG            >  SRR4302534.5063378/1‑94 (MQ=60)

                                                                                  CACGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATA            <  SRR4302534.5077154/94‑1 (MQ=60)

                                                                                    CGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTC          <  SRR4302534.1208609/94‑1 (MQ=60)

                                                                                    CGGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTC          >  SRR4302534.6226832/1‑94 (MQ=60)

                                                                                     GGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCT         <  SRR4302534.1646670/94‑1 (MQ=60)

                                                                                     GGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCT         <  SRR4302534.996425/94‑1 (MQ=60)

                                                                                     GGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCT         <  SRR4302534.4747508/94‑1 (MQ=60)

                                                                                     GGTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCT         <  SRR4302534.5726222/94‑1 (MQ=60)

                                                                                      GTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTG        <  SRR4302534.3979095/94‑1 (MQ=60)

                                                                                      GTGAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTG        >  SRR4302534.684522/1‑94 (MQ=60)

                                                                                      GTGAACAGTAAGGTCGTCGCCAAACCGTGCACGGTTTCCACCACCAATGCCACGGCTGATCTCGGCGGTCTTTATTCTTTCAGTCTTATGTCTG        >  SRR4302534.3713317/1‑94 (MQ=60)

                                                                                        GAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCC      <  SRR4302534.2383356/94‑1 (MQ=60)

                                                                                        GAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCC      <  SRR4302534.2993262/94‑1 (MQ=60)

                                                                                        GAACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCC      <  SRR4302534.2766046/94‑1 (MQ=60)

                                                                                         AACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCG     <  SRR4302534.3050546/94‑1 (MQ=60)

                                                                                          ACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGG    <  SRR4302534.5095008/94‑1 (MQ=60)

                                                                                          ACAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGG    >  SRR4302534.3898179/1‑94 (MQ=60)

                                                                                           CAGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGG   <  SRR4302534.2318744/94‑1 (MQ=60)

                                                                                            AGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGGG  <  SRR4302534.1838149/94‑1 (MQ=60)

                                                                                            AGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGGG  >  SRR4302534.1664021/1‑94 (MQ=60)

                                                                                            AGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGGG  <  SRR4302534.598454/94‑1 (MQ=60)

                                                                                            AGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGGG  <  SRR4302534.3512634/94‑1 (MQ=60)

TGAAATGGTGCAAACGTGGGTATGTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGCAGCCGATGTCACCATCACGGTGAACGGTAAGGTCGTCGCCAAACCGTGTACGGTTTCCACCACCAATGCCACGGTTGATCTCGGCGATCTTTATTCTTTCAGTCTTATGTCTGCCGGGG  >  NC_000913/4545855‑4546040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`