Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,561,662	A→G	R201R (CGT→CGC)	yjiL ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,561,662	0	A	G	100.0%	811.7 / NA	235	R201R (CGT→CGC)	yjiL	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/100); total (135/100)

Only 100 of 250 total aligned reads displayed.

CGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGACGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCT  >  NC_000913/4561572‑4561751

cGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCg                                                                                         <  1:3814425/93‑1 (MQ=255)

cGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCg                                                                                         >  1:2129214/1‑93 (MQ=255)

 ggCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGa                                                                                        >  2:737847/1‑93 (MQ=255)

  gCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAg                                                                                       <  2:4014073/93‑1 (MQ=255)

  gCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAg                                                                                       <  2:5941627/93‑1 (MQ=255)

     ttCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCaa                                                                                    >  1:2738987/1‑93 (MQ=255)

     ttCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCaa                                                                                    >  1:2883362/1‑93 (MQ=255)

     ttCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCaa                                                                                    <  2:2924942/93‑1 (MQ=255)

      tCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAAt                                                                                   <  2:4548547/93‑1 (MQ=255)

       cGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGAGCTTCACAGGAGAGAGGAGGAAta                                                                                  >  1:2444018/1‑92 (MQ=255)

         cAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGaa                                                                                >  2:5730753/1‑93 (MQ=255)

           ggTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAt                                                                              >  1:1567912/1‑93 (MQ=255)

           ggTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAt                                                                              >  1:614192/1‑93 (MQ=255)

           ggTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAt                                                                              <  1:3527050/93‑1 (MQ=255)

            gTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAtt                                                                             <  1:847988/93‑1 (MQ=255)

            gTGAGATTCAAGCATCCGGGAAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAtt                                                                             <  1:1657748/93‑1 (MQ=255)

             tGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTg                                                                            <  2:257469/93‑1 (MQ=255)

              gagaTTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTgg                                                                           >  2:4315632/1‑93 (MQ=255)

               agaTTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGc                                                                          >  2:3186825/1‑93 (MQ=255)

                 aTTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCAc                                                                        <  1:5788809/93‑1 (MQ=255)

                   tCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCActc                                                                      <  2:224182/93‑1 (MQ=255)

                    ccAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCActcc                                                                     <  2:5491310/93‑1 (MQ=255)

                    ccAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCActcc                                                                     <  1:3501999/93‑1 (MQ=255)

                     cAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCActcct                                                                    <  2:2797919/93‑1 (MQ=255)

                     cAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCActcct                                                                    >  2:6052362/1‑93 (MQ=255)

                        cATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCcg                                                                 <  2:4370172/93‑1 (MQ=255)

                             gggCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCa                                                            >  1:4919116/1‑93 (MQ=255)

                               gCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATc                                                          <  2:1701993/93‑1 (MQ=255)

                                 aaaCTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATcgc                                                        >  1:2829297/1‑93 (MQ=255)

                                 aaaCTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATcgc                                                        >  2:6237726/1‑93 (MQ=255)

                                 aaaCTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCATCCGCGCCATcgc                                                        >  1:2419240/1‑93 (MQ=255)

                                  aaCTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATcgcg                                                       <  1:1293585/93‑1 (MQ=255)

                                    cTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGtt                                                     <  1:5676277/93‑1 (MQ=255)

                                     ttCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTa                                                    >  1:1257676/1‑93 (MQ=255)

                                        tGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATc                                                 <  1:2703820/93‑1 (MQ=255)

                                         ggCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCa                                                >  1:1419137/1‑93 (MQ=255)

                                           cAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACt                                              >  2:5399452/1‑93 (MQ=255)

                                            aaTGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTc                                             <  2:2836542/93‑1 (MQ=255)

                                            aaTGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTc                                             >  2:2752524/1‑93 (MQ=255)

                                            aaTGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTc                                             >  1:5976011/1‑93 (MQ=255)

                                             aTGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTcc                                            >  1:1499362/1‑93 (MQ=255)

                                              tGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCt                                           <  1:73269/93‑1 (MQ=255)

                                              tGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCt                                           <  1:916527/93‑1 (MQ=255)

                                               gACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTg                                          >  2:2134726/1‑93 (MQ=255)

                                               gACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTg                                          >  1:4400028/1‑93 (MQ=255)

                                                aCTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGc                                         >  1:5091304/1‑93 (MQ=255)

                                                  tAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCga                                       >  2:3430515/1‑93 (MQ=255)

                                                  tAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCga                                       >  2:1493715/1‑93 (MQ=255)

                                                  tAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCga                                       <  2:2001633/93‑1 (MQ=255)

                                                    aCGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGTCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCgaga                                     <  1:3682590/93‑1 (MQ=255)

                                                     cGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGaa                                    <  2:2356812/93‑1 (MQ=255)

                                                     cGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGaa                                    >  2:1845334/1‑93 (MQ=255)

                                                     cGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGaa                                    <  1:2221986/93‑1 (MQ=255)

                                                       ccaccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATc                                  <  1:1446030/93‑1 (MQ=255)

                                                        caccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCg                                 >  1:6017337/1‑93 (MQ=255)

                                                        caccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCg                                 >  1:5591297/1‑93 (MQ=255)

                                                        caccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCg                                 <  2:5435408/93‑1 (MQ=255)

                                                         accaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGGAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGc                                >  1:5417452/1‑93 (MQ=255)

                                                         accaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGc                                >  1:6343993/1‑93 (MQ=255)

                                                         accaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGc                                >  1:4468844/1‑93 (MQ=255)

                                                          ccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCt                               >  2:926717/1‑93 (MQ=255)

                                                          ccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCt                               <  2:1072275/93‑1 (MQ=255)

                                                          ccaGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCt                               <  1:4562231/93‑1 (MQ=255)

                                                           caGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCtt                              <  2:722073/93‑1 (MQ=255)

                                                           caGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCtt                              >  1:3287988/1‑93 (MQ=255)

                                                            aGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTc                             >  2:2637559/1‑93 (MQ=255)

                                                            aGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTc                             <  2:497306/93‑1 (MQ=255)

                                                             gTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCt                            <  2:1835478/93‑1 (MQ=255)

                                                             gTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCt                            <  2:875077/93‑1 (MQ=255)

                                                             gTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCt                            <  2:5413376/93‑1 (MQ=255)

                                                             atAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCt                            <  1:3262546/92‑1 (MQ=255)

                                                               aagcAGGATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCGCGCCGCCGCGCCATCGCGTTAATCACCCCTGCGAGAATCGCTTCTgg                          <  1:1909231/90‑1 (MQ=255)

                                                               aaaCAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTgg                          <  1:4221039/93‑1 (MQ=255)

                                                                  cAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGgcgc                       <  2:5119113/93‑1 (MQ=255)

                                                                   aGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGcgcg                      <  1:5758080/93‑1 (MQ=255)

                                                                    gAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGa                     >  1:1213551/1‑93 (MQ=255)

                                                                    gAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGa                     >  2:2881644/1‑93 (MQ=255)

                                                                     aaTCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGAc                    >  1:6418708/1‑93 (MQ=255)

                                                                     aaTCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGAc                    >  1:4181145/1‑93 (MQ=255)

                                                                       tCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGc                  <  2:4725047/93‑1 (MQ=255)

                                                                       tCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGc                  >  1:1936403/1‑93 (MQ=255)

                                                                       tCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGc                  <  2:5972160/93‑1 (MQ=255)

                                                                        cGGCGCTTCACAGGAGAGGCGAGGAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGcc                 <  1:1052265/93‑1 (MQ=255)

                                                                        cGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGcc                 <  2:4022393/93‑1 (MQ=255)

                                                                          gcgcTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCg               <  2:3756226/93‑1 (MQ=255)

                                                                           cgcTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGc              <  2:4089005/93‑1 (MQ=255)

                                                                           cgcTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGc              <  2:1736774/93‑1 (MQ=255)

                                                                             cTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTg            >  2:2950064/1‑93 (MQ=255)

                                                                              ttCACAGGAGAGGCGAGCAATGAGATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGa           >  1:5184371/1‑93 (MQ=255)

                                                                              ttCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTTATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGa           <  2:4193354/93‑1 (MQ=255)

                                                                              ttCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGa           <  2:1126332/93‑1 (MQ=255)

                                                                               tCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAg          >  2:3712013/1‑93 (MQ=255)

                                                                               tCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAg          >  2:6465134/1‑93 (MQ=255)

                                                                                cacaGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAgc         >  2:5551389/1‑93 (MQ=255)

                                                                                cacaGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAgc         <  2:1342607/93‑1 (MQ=255)

                                                                                  caGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAgcgc       >  1:3996941/1‑93 (MQ=255)

                                                                                     gagaggCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAgg    >  1:1746809/1‑93 (MQ=255)

                                                                                     gagaggCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAgg    <  1:4992215/93‑1 (MQ=255)

                                                                                      agaggCGAGCACTGAAATTGTCGCTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGGGCGACGCCCGCTGAGCGCAGGc   <  2:6426140/93‑1 (MQ=255)

                                                                                       gaggCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCt  >  1:5451938/1‑93 (MQ=255)

CGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGACGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCT  >  NC_000913/4561572‑4561751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGACGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTGATC  >  NC_000913/4561569‑4561755

TACCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGG                                                                                               <  SRR4302534.2550080/94‑1 (MQ=60)

 ACCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGC                                                                                              <  SRR4302534.5678609/94‑1 (MQ=60)

 ACCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGC                                                                                              >  SRR4302534.4951045/1‑94 (MQ=60)

  CCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTCACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCG                                                                                             <  SRR4302534.5387054/94‑1 (MQ=60)

  CCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCG                                                                                             >  SRR4302534.2185303/1‑94 (MQ=60)

  CCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCG                                                                                             <  SRR4302534.12610/94‑1 (MQ=60)

   CGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGA                                                                                            <  SRR4302534.3916874/94‑1 (MQ=60)

      CATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCA                                                                                         >  SRR4302534.4574628/1‑94 (MQ=60)

      CATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCA                                                                                         <  SRR4302534.1328788/94‑1 (MQ=60)

       ATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAA                                                                                        >  SRR4302534.2959016/1‑94 (MQ=60)

       ATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAA                                                                                        >  SRR4302534.2811167/1‑94 (MQ=60)

         TCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGAGCTTCACAGGAGAGAggaggaata                                                                                      >  SRR4302534.2508971/1‑85 (MQ=60)

           GCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAA                                                                                    >  SRR4302534.1451279/1‑94 (MQ=60)

            CAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAA                                                                                   >  SRR4302534.1526757/1‑94 (MQ=60)

             AGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAT                                                                                  >  SRR4302534.1608981/1‑94 (MQ=60)

             AGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAAT                                                                                  >  SRR4302534.629110/1‑94 (MQ=60)

              GGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATT                                                                                 <  SRR4302534.3621921/94‑1 (MQ=60)

              GGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATT                                                                                 <  SRR4302534.4065863/94‑1 (MQ=60)

              GGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATT                                                                                 >  SRR4302534.553682/1‑94 (MQ=60)

               GTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTG                                                                                <  SRR4302534.869357/94‑1 (MQ=60)

               GTGAGATTCAAGCATCCGGGAAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTG                                                                                <  SRR4302534.1700939/94‑1 (MQ=60)

                 GAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGC                                                                              >  SRR4302534.5421374/1‑94 (MQ=60)

                    ATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACT                                                                           <  SRR4302534.5945849/94‑1 (MQ=60)

                      TCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCC                                                                         <  SRR4302534.1632837/94‑1 (MQ=60)

                       CCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCT                                                                        <  SRR4302534.3596196/94‑1 (MQ=60)

                          GCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCG                                                                     <  SRR4302534.1866573/94‑1 (MQ=60)

                           CATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGC                                                                    >  SRR4302534.3351771/1‑94 (MQ=60)

                           CATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGC                                                                    >  SRR4302534.6061484/1‑94 (MQ=60)

                            ATCCGGGCAAACTTCTGGCAATGAGTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCG                                                                   <  SRR4302534.4058572/94‑1 (MQ=60)

                            ATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCG                                                                   >  SRR4302534.3603074/1‑94 (MQ=60)

                             TCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGC                                                                  <  SRR4302534.1268550/94‑1 (MQ=60)

                              CCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCC                                                                 >  SRR4302534.5609381/1‑94 (MQ=60)

                               CGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCA                                                                >  SRR4302534.5052440/1‑94 (MQ=60)

                               CGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCA                                                                >  SRR4302534.2309075/1‑94 (MQ=60)

                                  GCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCG                                                             >  SRR4302534.4159306/1‑94 (MQ=60)

                                   CAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGC                                                            <  SRR4302534.722477/94‑1 (MQ=60)

                                   CAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGC                                                            >  SRR4302534.2903658/1‑94 (MQ=60)

                                   CAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCATCCGCGCCATCGC                                                            >  SRR4302534.2483574/1‑94 (MQ=60)

                                    AAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCT                                                           >  SRR4302534.51834/1‑94 (MQ=60)

                                    AAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCG                                                           >  SRR4302534.1543338/1‑94 (MQ=60)

                                    AAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCG                                                           >  SRR4302534.3336346/1‑94 (MQ=60)

                                    AAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCG                                                           <  SRR4302534.4310850/94‑1 (MQ=60)

                                    AAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCAGCGCTTCACAGGAGAGGCGAGGAATGAAATTGGCACTCCTCCGCGCCATCGCG                                                           >  SRR4302534.5922749/1‑94 (MQ=60)

                                     AACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGT                                                          <  SRR4302534.1327649/94‑1 (MQ=60)

                                     AACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGT                                                          >  SRR4302534.3721494/1‑94 (MQ=60)

                                      ACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTT                                                         >  SRR4302534.4430996/1‑94 (MQ=60)

                                       CTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTA                                                        >  SRR4302534.1290814/1‑94 (MQ=60)

                                       CTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTA                                                        <  SRR4302534.2580170/94‑1 (MQ=60)

                                       CTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTA                                                        >  SRR4302534.795681/1‑94 (MQ=60)

                                       CTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTA                                                        <  SRR4302534.5829954/94‑1 (MQ=60)

                                         TCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAAT                                                      >  SRR4302534.2096523/1‑94 (MQ=60)

                                         TCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGAGCCATCGCGTTAAT                                                      >  SRR4302534.5260549/1‑94 (MQ=60)

                                          CTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATC                                                     >  SRR4302534.4931304/1‑94 (MQ=60)

                                          CTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATC                                                     <  SRR4302534.588029/94‑1 (MQ=60)

                                          CTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATC                                                     >  SRR4302534.2279633/1‑94 (MQ=60)

                                           TGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCA                                                    <  SRR4302534.2775231/94‑1 (MQ=60)

                                           TGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCA                                                    >  SRR4302534.1456475/1‑94 (MQ=60)

                                           TGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCA                                                    >  SRR4302534.2487064/1‑94 (MQ=60)

                                            GGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCAC                                                   <  SRR4302534.6566050/94‑1 (MQ=60)

                                            GGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCAC                                                   >  SRR4302534.4573161/1‑94 (MQ=60)

                                              CAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTC                                                 >  SRR4302534.6138320/1‑94 (MQ=60)

                                               AATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCC                                                >  SRR4302534.1538822/1‑94 (MQ=60)

                                               AATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCC                                                <  SRR4302534.3729622/94‑1 (MQ=60)

                                                 TGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTG                                              >  SRR4302534.4518746/1‑94 (MQ=60)

                                                 TGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTG                                              <  SRR4302534.75264/94‑1 (MQ=60)

                                                 TGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTG                                              <  SRR4302534.939843/94‑1 (MQ=60)

                                                  GACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGC                                             >  SRR4302534.5228728/1‑94 (MQ=60)

                                                   ACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCG                                            >  SRR4302534.6238197/1‑94 (MQ=60)

                                                     TAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAG                                          >  SRR4302534.3863533/1‑94 (MQ=60)

                                                     TAACGCCAACAGTAAACAGACTCGGCGCTGCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCCCCATCGCGTTAATCACTCCTGCGAG                                          <  SRR4302534.5962440/94‑1 (MQ=60)

                                                      AACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGA                                         >  SRR4302534.6265421/1‑94 (MQ=60)

                                                      AACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGA                                         >  SRR4302534.169308/1‑94 (MQ=60)

                                                       ACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGTCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAA                                        <  SRR4302534.3781597/94‑1 (MQ=60)

                                                        CGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCCTCGCGTTAATCACTCCTGCGAGAAT                                       >  SRR4302534.1085204/1‑94 (MQ=60)

                                                        CGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAAT                                       <  SRR4302534.2182234/94‑1 (MQ=60)

                                                        CGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAAT                                       <  SRR4302534.2280832/94‑1 (MQ=60)

                                                         GCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATC                                      >  SRR4302534.3509075/1‑94 (MQ=60)

                                                          CCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCG                                     >  SRR4302534.6180825/1‑94 (MQ=60)

                                                          CCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCG                                     <  SRR4302534.1484090/94‑1 (MQ=60)

                                                          CCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCG                                     >  SRR4302534.5742455/1‑94 (MQ=60)

                                                           CACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGGAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGC                                    >  SRR4302534.5563197/1‑94 (MQ=60)

                                                           CACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGC                                    >  SRR4302534.4589701/1‑94 (MQ=60)

                                                           CACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGC                                    <  SRR4302534.6324546/94‑1 (MQ=60)

                                                           CACCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGC                                    >  SRR4302534.6515329/1‑94 (MQ=60)

                                                             CCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTT                                  >  SRR4302534.3375660/1‑94 (MQ=60)

                                                             CCAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTT                                  <  SRR4302534.4685922/94‑1 (MQ=60)

                                                              CAGTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTC                                 <  SRR4302534.5572392/94‑1 (MQ=60)

                                                                GTAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCACCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTG                               <  SRR4302534.5749161/94‑1 (MQ=60)

                                                                ATAAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTG                               <  SRR4302534.3349423/94‑1 (MQ=60)

                                                                  AAGCAGGATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCGCGCCGCCGCGCCATCGCGTTAATCACCCCTGCGAGAATCGCTTCTGGC                             <  SRR4302534.1959057/94‑1 (MQ=60)

                                                                  AAACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGC                             <  SRR4302534.4334827/94‑1 (MQ=60)

                                                                   AACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCG                            >  SRR4302534.4615469/1‑94 (MQ=60)

                                                                   AACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCG                            <  SRR4302534.2966470/94‑1 (MQ=60)

                                                                    ACAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCTTTAATCACTCCTGCGAGAATCGCTTCTGGCGC                           <  SRR4302534.827234/94‑1 (MQ=60)

                                                                     CAGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCG                          >  SRR4302534.1515819/1‑94 (MQ=60)

                                                                      AGAATCGGCGCTTCACAGGTGAGGCGAGCAATGAAATTAGAACTCCTCCCCGTCAGCGCGTTAATCACTCCTGCGAGAATCGCTTCTAGCGCGA                         >  SRR4302534.5280941/1‑94 (MQ=60)

                                                                      AGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGA                         >  SRR4302534.1245496/1‑94 (MQ=60)

                                                                      AGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGA                         >  SRR4302534.1725997/1‑94 (MQ=60)

                                                                      AGAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGA                         <  SRR4302534.5914270/94‑1 (MQ=60)

                                                                       GAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGAC                        >  SRR4302534.4294117/1‑94 (MQ=60)

                                                                       GAATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGAC                        >  SRR4302534.6591854/1‑94 (MQ=60)

                                                                        AATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACG                       >  SRR4302534.295327/1‑94 (MQ=60)

                                                                        AATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACG                       <  SRR4302534.6570206/94‑1 (MQ=60)

                                                                        AATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACG                       >  SRR4302534.2820902/1‑94 (MQ=60)

                                                                         ATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGC                      >  SRR4302534.1987032/1‑94 (MQ=60)

                                                                         ATCGGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGC                      >  SRR4302534.6165569/1‑94 (MQ=60)

                                                                           CGGCGCTTCACAGGAGAGGCGAGGAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCC                    <  SRR4302534.1079502/94‑1 (MQ=60)

                                                                            GGCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCG                   >  SRR4302534.1298380/1‑94 (MQ=60)

                                                                             GCGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGC                  >  SRR4302534.1482133/1‑94 (MQ=60)

                                                                              gcCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGGGTTAATCACTCCTGCGAGAATCGGTTCTGGCGCGACGCCCGCT                 <  SRR4302534.25969/92‑1 (MQ=60)

                                                                              CGCTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCT                 <  SRR4302534.5101054/94‑1 (MQ=60)

                                                                                CTTCACAGGAGAGGCGAGCAATGAGATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGA               >  SRR4302534.5324111/1‑94 (MQ=60)

                                                                                CTTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGA               <  SRR4302534.5184585/94‑1 (MQ=60)

                                                                                 TTCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAG              <  SRR4302534.3541167/94‑1 (MQ=60)

                                                                                  TCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGC             >  SRR4302534.91444/1‑94 (MQ=60)

                                                                                  TCACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGC             >  SRR4302534.1247466/1‑94 (MQ=60)

                                                                                   CACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCG            >  SRR4302534.4300214/1‑94 (MQ=60)

                                                                                    ACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGC           >  SRR4302534.4103938/1‑94 (MQ=60)

                                                                                    ACAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGC           >  SRR4302534.2856671/1‑94 (MQ=60)

                                                                                     CAGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCA          >  SRR4302534.472000/1‑94 (MQ=60)

                                                                                      AGGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAG         <  SRR4302534.1839016/94‑1 (MQ=60)

                                                                                       GGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAct        >  SRR4302534.2778354/1‑92 (MQ=60)

                                                                                       GGAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGG        >  SRR4302534.1792140/1‑94 (MQ=60)

                                                                                        GAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGC       <  SRR4302534.5680190/94‑1 (MQ=60)

                                                                                        GAGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGC       <  SRR4302534.5127256/94‑1 (MQ=60)

                                                                                         AGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCT      >  SRR4302534.1964517/1‑94 (MQ=60)

                                                                                         AGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCT      >  SRR4302534.5598840/1‑94 (MQ=60)

                                                                                         AGAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCT      <  SRR4302534.2407725/94‑1 (MQ=60)

                                                                                          GAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTG     <  SRR4302534.5856617/94‑1 (MQ=60)

                                                                                          GAGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTG     <  SRR4302534.2714697/94‑1 (MQ=60)

                                                                                           AGGCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTGA    <  SRR4302534.3478736/94‑1 (MQ=60)

                                                                                             GCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTGATC  >  SRR4302534.6388226/1‑94 (MQ=60)

                                                                                             GCGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTGATC  <  SRR4302534.1969837/94‑1 (MQ=60)

TACCGGCATTCGCAGGTGAGATTCCAGCATCCGGGCAAACTTCTGGCAATGACTAACGCCACCAGTAAACAGAATCGGCGCTTCACAGGAGAGACGAGCAATGAAATTGGCACTCCTCCGCGCCATCGCGTTAATCACTCCTGCGAGAATCGCTTCTGGCGCGACGCCCGCTGAGCGCAGGCTGATC  >  NC_000913/4561569‑4561755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`