Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,606,898 |
T→C |
intergenic (+6/‑85) |
yjjG → / → prfC |
putative phosphatase/peptide chain release factor RF‑3 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,606,898 | 0 | T | C | 90.3%
| 453.6
/ 40.4
| 144 | intergenic (+6/‑85) | yjjG/prfC | putative phosphatase/peptide chain release factor RF‑3 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (56/74); minor base . (7/7); total (63/81) |
| Fisher's exact test for biased strand distribution p-value = 7.78e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.28e-01 |
Only 100 of 175 total aligned reads displayed.
CCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCTCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGA > NC_000913/4606808‑4606986
|
ccATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑Ccccc > 2:526252/1‑93 (MQ=255)
aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑Ccccccc > 1:1925773/1‑93 (MQ=255)
aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑Ccccccc < 1:5113106/93‑1 (MQ=255)
tCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑cccccccc < 2:4691228/93‑1 (MQ=255)
cgcgAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑Ccccccccc < 2:1283251/93‑1 (MQ=255)
cgcgAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑Ccccccccc > 2:4051953/1‑93 (MQ=255)
gcgAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑cccccccccc < 1:1331778/93‑1 (MQ=255)
gAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGtt < 1:3271103/93‑1 (MQ=255)
ggCAACCAGAAGGCATCGCCCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTTTAAACCCTGATT‑G‑CCCCCCCCCCGtt < 1:567565/92‑1 (MQ=255)
cAACCAGAGGCCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGa < 1:4651840/93‑1 (MQ=255)
aaCCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGag > 2:6196534/1‑92 (MQ=255)
aCCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATg < 2:903617/93‑1 (MQ=255)
aCCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATg > 1:6365072/1‑93 (MQ=255)
aCCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATg < 1:5540902/93‑1 (MQ=255)
aCCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATg < 1:4612717/93‑1 (MQ=255)
aCCAGAAGGCATCGCGCCCACCTGGACCGATTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCCttgttg > 2:114945/1‑93 (MQ=255)
ccAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGTTgg > 2:4680696/1‑93 (MQ=255)
aGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGt < 2:4376255/93‑1 (MQ=255)
aGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGt < 2:3291631/93‑1 (MQ=255)
aGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTa > 2:1597197/1‑93 (MQ=255)
gAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCCGTGATgggga > 1:3516608/1‑91 (MQ=255)
aGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTaaa > 1:3912236/1‑93 (MQ=255)
gCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAAt > 2:5387997/1‑93 (MQ=255)
cATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAg < 1:719437/93‑1 (MQ=255)
acgcgCCCACCTGCACCGTTTGTTCATTGCCGGAACTGGAACAGTCCCGGTTGAAATTCCTATTCC‑CCCCCCCCCCGTTGATGGGTAAAATAg < 2:1636222/92‑1 (MQ=255)
cgcgCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGcc < 2:5749197/93‑1 (MQ=255)
cgcgCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGcc < 2:455903/93‑1 (MQ=255)
gcCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGGAAAATAGCCGCa > 1:5858149/1‑93 (MQ=255)
ccACCTGGACCTTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAAt < 1:5586956/93‑1 (MQ=255)
ccACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAAt < 1:2787393/93‑1 (MQ=255)
cACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑GCCCCCCCCCCCGTTGATGGGTAAAATAGCCGCAAt < 1:4908910/93‑1 (MQ=255)
cccTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAAttt < 2:3592462/92‑1 (MQ=255)
aCCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑TCCCGCCCCCGTTTAAGGGTGAAATATCCTCAAtat > 1:4087108/1‑91 (MQ=255)
aCCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAAttt > 1:2869863/1‑93 (MQ=255)
aCCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAAAAGCCGCAAttt > 2:3597045/1‑93 (MQ=255)
cTGGCCCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAAttttt < 2:267488/93‑1 (MQ=255)
cTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAAAAGCCGAAAttttt > 1:3892755/1‑93 (MQ=255)
cTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAGCCGCAAtttttt > 2:498265/1‑92 (MQ=255)
tGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTc < 2:809615/93‑1 (MQ=255)
ggACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGCTTGGTAAAATAGGCGCCAttttttg > 2:1702852/1‑91 (MQ=255)
ggACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCg < 1:441553/93‑1 (MQ=255)
ggACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGGAAAATAGCCGCAAttttttg > 2:6102293/1‑91 (MQ=255)
gACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGt < 2:4325740/93‑1 (MQ=255)
gACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTAGATGGTTAAATTACCCCCAATTTTTTGt > 2:3253904/1‑93 (MQ=255)
gACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGtt < 2:5538314/93‑1 (MQ=255)
aCCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGGGACATAGCCGCAATTTTTCGtt > 2:5314691/1‑93 (MQ=255)
ccGTTTCTTCGTTGCACGATCTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGttt < 2:5842943/93‑1 (MQ=255)
cGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGCTTATGGGGAAAATAACCCCAATTTTTTGgttt > 2:298980/1‑93 (MQ=255)
tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACGGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTca < 1:4991117/93‑1 (MQ=255)
ttcttcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTcaac < 1:1597197/93‑1 (MQ=255)
tcttcGTTGCACGAACTGGAGCAGCTCCTGTGTAACCACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTcaac < 1:2150123/93‑1 (MQ=255)
tcttcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGACCCAATTTTTTGtttttcaa > 2:3844467/1‑89 (MQ=255)
tcttcGTGCCACGACCTGGAGCAGCTCCTTTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTcaac < 1:2591002/93‑1 (MQ=255)
cttcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTcaaca < 1:1522369/93‑1 (MQ=255)
tcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGCTGATGGGTAAAATAGCCGCACTTTTTCGGTTTCAACAAgc > 1:3123434/1‑93 (MQ=255)
cGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgc < 2:4380502/93‑1 (MQ=255)
cGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgc < 2:1477301/93‑1 (MQ=255)
gTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCCTTGAGGGGGTTAAAAGCCGAAAGTTTTGGTGTTTATCAAacg > 1:2317543/1‑93 (MQ=255)
gTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGGTGTGGGGGAAAAAAACCCCAAATTTTTGCTTTttacaaacag > 1:5825436/1‑89 (MQ=255)
tttcacaAACTGGGGCCGCCCCTGTGTAAACCCTCATT‑GCCCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcg < 1:247592/90‑1 (MQ=255)
tttcACGAACTGGGGCATCCCGTGTTTAAACCCTGATT‑GCCCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcg < 1:5933224/90‑1 (MQ=255)
tggCACGAACGGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgc < 1:3745687/91‑1 (MQ=255)
tGCCCGAACTGGAGCAGCTCCTGTGTAAACCCTGATT‑GCCCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgc < 1:1039902/93‑1 (MQ=255)
gCACGAACGGGAGCAGCTCCTGTGTAAACACGGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcgg < 1:842254/93‑1 (MQ=255)
cACGAAGTGGAGCACCTCTTTTGTAAACCCTGATT‑C‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcggc < 2:5497659/93‑1 (MQ=255)
aCGAACTGGAGCAGCTGCTGTGTAAACACTGATT‑GCCCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcggc < 1:3314618/93‑1 (MQ=255)
aCGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGTTGGGGAAAAAAGCCGCAAATTTTTGTTTTCAACAAccgcgggc > 2:3800548/1‑91 (MQ=255)
aCGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTTGTTTTCAACAAacgcggcg > 2:607653/1‑93 (MQ=255)
cGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcggcgc < 2:6081535/93‑1 (MQ=255)
gAACTGGAGCAGCTCCTGTGTAAACACTGATT‑C‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcggcgcg < 2:173472/93‑1 (MQ=255)
aaCTGGAGCATCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGa < 1:162657/93‑1 (MQ=255)
aCTGGAGGAGCTCCTGTGTAAACGCTGATT‑G‑CCCCCCCCACGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGAt < 1:5450758/93‑1 (MQ=255)
aCTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGAt < 2:649338/93‑1 (MQ=255)
aCTGGAGCAGCTCCTGTGTAAACACTGATG‑G‑CC‑GCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATg < 1:2556259/93‑1 (MQ=255)
tGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGc < 1:2071191/93‑1 (MQ=255)
tGGAGCAGCTCCTGTGTAAACACTGATT‑C‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGc < 2:1653467/93‑1 (MQ=255)
ggAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGcc < 2:188487/93‑1 (MQ=255)
ggAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGcc > 1:3164564/1‑93 (MQ=255)
ggAGCAGCTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCCTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTTAACAAAAGCGGCGGGATGcc > 2:1520568/1‑93 (MQ=255)
gcagcTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCt < 2:3973910/93‑1 (MQ=255)
gcagcTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCtt > 1:6163846/1‑93 (MQ=255)
agcTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTa > 1:2204720/1‑93 (MQ=255)
gcTCCTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTAc < 1:6028237/93‑1 (MQ=255)
cTCCTGTGTAAACACTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTc < 1:6210914/93‑1 (MQ=255)
ccTGTGTAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCa > 2:6427850/1‑93 (MQ=255)
tgtgTAAACACTGATT‑GCCCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGGGATACCGCTTACTCaa > 1:1034356/1‑93 (MQ=255)
gtgtAAACACTGATT‑G‑CCCCCCCCCCGGTGATGGGGGAAAAAACCGCAATTTTTTGCTTTTTAAAAACGCGGCGCGATGCGGCCTTCTCaaga > 2:5644808/1‑93 (MQ=255)
tgtAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCaagaa < 1:3949937/93‑1 (MQ=255)
tgtAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCaagaa < 1:1696878/93‑1 (MQ=255)
gtAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCaagaag < 1:2534751/93‑1 (MQ=255)
tAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAagaaga < 2:5033947/93‑1 (MQ=255)
tAAACACTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAagaaga > 1:4318846/1‑93 (MQ=255)
acacTGATT‑G‑CC‑CCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGaagaaaga > 2:2845400/1‑93 (MQ=255)
cTGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAAt < 2:1973281/93‑1 (MQ=255)
tGATT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAAtt < 2:3985483/93‑1 (MQ=255)
tGATT‑G‑CCCCCCCCCCGTTGATGGGGAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAAtt > 1:718179/1‑93 (MQ=255)
gATT‑G‑CCCCCCCCCCGTTGATGGGGAAAAATACCGCAATTTTTTGTTTTCCACAAGCACGGCGCGACTCCGCATGCTCCAAAAGAAAGAAATa > 2:4728126/1‑93 (MQ=255)
gATT‑G‑CC‑CCGCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTAt < 2:2294124/93‑1 (MQ=255)
aTT‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTAt < 1:5343127/93‑1 (MQ=255)
t‑G‑CCCCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAATAATTATGa < 1:6286169/93‑1 (MQ=255)
|
CCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATT‑G‑CCTCCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGA > NC_000913/4606808‑4606986
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTG > NC_000913/4606805‑4606991
|
CCACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCC < SRR4302534.5756926/94‑1 (MQ=60)
CACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCC < SRR4302534.3892865/94‑1 (MQ=60)
CACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCC < SRR4302534.2931417/94‑1 (MQ=60)
ACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCC > SRR4302534.5857946/1‑94 (MQ=60)
CCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCC < SRR4302534.5724091/94‑1 (MQ=60)
CATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCC > SRR4302534.1976109/1‑94 (MQ=60)
ATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCC < SRR4302534.5251095/94‑1 (MQ=60)
ATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCC < SRR4302534.2317585/94‑1 (MQ=60)
GCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCG < SRR4302534.1366886/94‑1 (MQ=60)
GAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT > SRR4302534.1323385/1‑94 (MQ=60)
GAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CC‑CCCCCCCGTT‑G < SRR4302534.3358245/94‑1 (MQ=60)
GGCAACCAGAAGGCATCGCCCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTTTAAACCCTGATTG‑CCCCCCCCCCGTT‑G < SRR4302534.581500/94‑1 (MQ=60)
AGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑G > SRR4302534.4036788/1‑94 (MQ=60)
AGCAACCAGAAGGCATCGCCCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑G < SRR4302534.5536029/94‑1 (MQ=60)
CAACCAGAGGCCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GAT < SRR4302534.4778128/94‑1 (MQ=60)
AACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATG > SRR4302534.6536947/1‑94 (MQ=60)
AACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATG < SRR4302534.4579205/94‑1 (MQ=60)
ACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGG < SRR4302534.4737907/94‑1 (MQ=60)
ACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGG < SRR4302534.5690469/94‑1 (MQ=60)
CAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcttgacgggg > SRR4302534.2489864/1‑84 (MQ=60)
CAGAAGGCATCGCGCCCACCAGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGA > SRR4302534.6478011/1‑94 (MQ=60)
CAGAAGGCATCGCCCCCCCCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAACTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGT < SRR4302534.1454375/94‑1 (MQ=60)
AGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCCGT‑GATGGGGA > SRR4302534.3611196/1‑94 (MQ=60)
AAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAA > SRR4302534.4017137/1‑94 (MQ=60)
AGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCccgttgtgggggaa > SRR4302534.4702934/1‑80 (MQ=60)
AGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCccgtgtgtggggaa > SRR4302534.22661/1‑80 (MQ=60)
CATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CC‑CCCCCCCGTT‑GATGGGTAAAATAGC < SRR4302534.737180/94‑1 (MQ=60)
ATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGCT‑GATGGGTAAAATAAC > SRR4302534.6329850/1‑94 (MQ=60)
CGCGCCCACCTGGCCCGTTTCTTCGTTGCCCGAACGGGAACCACCCCGGTGTAAACCCTGATTC‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCG < SRR4302534.5212305/94‑1 (MQ=32)
cgGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTTTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGC < SRR4302534.4870950/92‑1 (MQ=60)
CGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcccgtgggggagaaaaacacca > SRR4302534.5654403/1‑72 (MQ=60)
CGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGGAAAATAGCCGCA > SRR4302534.6017208/1‑94 (MQ=60)
CCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGGT‑GCTGGGGAAAATAGCCGCAAT > SRR4302534.1600899/1‑94 (MQ=60)
CCACCTGGACCTTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATT < SRR4302534.5737953/94‑1 (MQ=60)
CCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcttgagtgggaaaaaaaccgcaaat > SRR4302534.3734530/1‑69 (MQ=60)
CCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATT < SRR4302534.2809611/94‑1 (MQ=60)
CCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATT < SRR4302534.2860707/94‑1 (MQ=60)
CACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTGCCCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATT < SRR4302534.5041964/94‑1 (MQ=60)
CACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTTtagtggtgaaaaaaacgcaactt > SRR4302534.1360150/1‑71 (MQ=60)
CACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTT > SRR4302534.2945223/1‑94 (MQ=60)
ACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTT > SRR4302534.6429381/1‑94 (MQ=60)
CCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAAAAGCCGAAATTTTT > SRR4302534.3997249/1‑94 (MQ=60)
CCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGAT‑GATGGGTAAAATAGCCGCAATTTTT > SRR4302534.5342407/1‑94 (MQ=60)
CTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcctgtgggggaaaaaaaccccccattttt > SRR4302534.2579582/1‑65 (MQ=60)
CTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGAGTAAAAgagatgaaatatgtt > SRR4302534.2473637/1‑79 (MQ=60)
TGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGctggtgttgtgaaaaacatcacattttgt > SRR4302534.2273223/1‑65 (MQ=60)
GGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcgcaagtggggggaaaagcccaaatttttct > SRR4302534.4640323/1‑63 (MQ=60)
GGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGT < SRR4302534.452775/94‑1 (MQ=60)
ACCGTTTCTTCGTTGCACGAACTGGGGCAGCTCCTGTGTAAACACTTATTG‑CC‑CCCCCCCGTTGGTTGGGGAAAATAGCCGAAATTTTTCTTTT > SRR4302534.833917/1‑94 (MQ=55)
CGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCCTT‑GATGGGGTAAATAAACGCAATTTTTTGTTTTT > SRR4302534.6164918/1‑94 (MQ=60)
TTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACGGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAA < SRR4302534.5126142/94‑1 (MQ=60)
TTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CC‑CCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACA < SRR4302534.1638929/94‑1 (MQ=60)
TCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAACCACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACA < SRR4302534.2206875/94‑1 (MQ=60)
TCTTCGTGCCACGACCTGGAGCAGCTCCTTTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACA < SRR4302534.2659594/94‑1 (MQ=60)
CTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAA < SRR4302534.1562336/94‑1 (MQ=60)
ttctgtgcgCGAACTGGAGCCGCTCCTGTTTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAG < SRR4302534.1426715/85‑1 (MQ=60)
TTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CC‑CCCCCCCGCT‑GATGGGTAAAATAGCCGCACTTTTTCGGTTTCAACAAGC > SRR4302534.3205544/1‑94 (MQ=60)
TCGTTTCCCGAACGGGAGCAACTCCTGTGTAAACGCGGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGC < SRR4302534.3083541/94‑1 (MQ=60)
TCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGC < SRR4302534.2621513/94‑1 (MQ=60)
CGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCggtgtgggggaaaaaaaccccaaatttttgctttttacaaacag > SRR4302534.5983560/1‑50 (MQ=60)
CGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcttgagggggttaaaagccgaaagttttggtgtttatcaaacg > SRR4302534.2379044/1‑51 (MQ=60)
CGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCG < SRR4302534.4750277/94‑1 (MQ=60)
GTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcccttttgggggtacaaagcgccaatttttgttttttttttgtc > SRR4302534.2470929/1‑50 (MQ=60)
TGGCACGAACGGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCG < SRR4302534.3846311/94‑1 (MQ=60)
TGCCCGAACTGGAGCAGCTCCTGTGTAAACCCTGATTGCCCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCG < SRR4302534.1066746/94‑1 (MQ=60)
tccCGAACTGGAGCAGCTCCTGTTTAAACCCTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGC < SRR4302534.5244851/91‑1 (MQ=60)
GCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGGAAAAAAGCTGCAATTTTTttttttttacaagacccgg > SRR4302534.4649916/1‑75 (MQ=60)
GCACGAACGGGAGCAGCTCCTGTGTAAACACGGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGC < SRR4302534.863477/94‑1 (MQ=60)
CACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTTtttgggggaaaaaaaacccaatttttttttttttaaaacgcgggg > SRR4302534.4670181/1‑49 (MQ=60)
CACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑TATGGGTGAAATAGCCGCAATTTTTTGTTTTtaaaaagggccgtg > SRR4302534.6074436/1‑80 (MQ=60)
ACGAACTGGAGCAGCTGCTGTGTAAACACTGATTGCCCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCG < SRR4302534.3403187/94‑1 (MQ=60)
ACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcttgttggttaaattaccgcaaatttttctttttttataaacaatgcgg > SRR4302534.4927122/1‑45 (MQ=60)
AACTGGAGCATCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGAT < SRR4302534.166918/94‑1 (MQ=60)
AACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcgtgatggggaaaaaaaacgcaattttttttttttaacaaacacgggggggt > SRR4302534.342368/1‑42 (MQ=60)
ACTGGAGGAGCTCCTGTGTAAACGCTGATTG‑CCCCCCCCACGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATG < SRR4302534.5597621/94‑1 (MQ=60)
ACTGGAGCAGCTCCTGTGTAAACACTGATGG‑CC‑GCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGC < SRR4302534.2624018/94‑1 (MQ=60)
CTGGAGCAGCTCCTGTGTAAACACTGATTGCCCCCCCCCCCGTT‑GATAGGGAAAAAAACCGCAAATTTTCTTTTTCAAAAAACGCGGCGgcaag > SRR4302534.2118862/1‑89 (MQ=28)
TGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcttatggagttcgtaagagcgaatgactttgtttttatatttgtgtgtggcgcga > SRR4302534.1196420/1‑39 (MQ=60)
TGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCC < SRR4302534.6551442/94‑1 (MQ=60)
TGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCC < SRR4302534.2125367/94‑1 (MQ=60)
TGGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCC > SRR4302534.3247989/1‑94 (MQ=60)
GGAGCAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCcctggtgggggaaaaaaaccccacttttttttttttacaaaaccggggggaaggcc > SRR4302534.330995/1‑38 (MQ=60)
gaagactcatgaaTAAACACTGTTTG‑CCCCCCCCCCGTT‑GATGAGTAAAATAGCCGCAATTATTCGTTTTCAACAAGCGCGGAGCGATGCCACT < SRR4302534.6645113/81‑1 (MQ=60)
AGCAGCTCCTGTGTAAACACTGATTG‑CC‑CCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTT > SRR4302534.6331498/1‑94 (MQ=60)
GCAGTTCTTGTGAAAACATTGTTTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTT < SRR4302534.3214818/94‑1 (MQ=60)
gcgctccttgGTAAACACCGATTG‑GCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTA < SRR4302534.3282166/84‑1 (MQ=60)
CAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTA > SRR4302534.2263068/1‑94 (MQ=60)
CAGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTA < SRR4302534.3463903/94‑1 (MQ=60)
AGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTctgcgggctgaaaaagcacacctgtgtagtttgtcatatgggcgcggacgagccagaca > SRR4302534.4658469/1‑35 (MQ=59)
AGCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGAAAAATAGCCGCAATTTTTGGTTTTCAAaaaggccggggcgaggccccttac > SRR4302534.2087384/1‑70 (MQ=60)
GCTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACT < SRR4302534.6192047/94‑1 (MQ=60)
CTCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑CAGGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTC > SRR4302534.3261500/1‑94 (MQ=60)
CTCCTGTGTAAACACTGATTG‑CC‑CCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCA < SRR4302534.6379716/94‑1 (MQ=60)
CCCTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCA < SRR4302534.2635681/94‑1 (MQ=60)
CTGTGTAAACACTGATTGCCCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGGGATACCGCTTACTCAA > SRR4302534.1061049/1‑94 (MQ=60)
CTGTGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGGAAAATAGACGCCATTTTTCGTTTTCAACAAGCGCGGGGCGATGCCGCTTACTCAAG > SRR4302534.657740/1‑94 (MQ=60)
GTGTAAACACTGATTG‑CC‑CCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAG < SRR4302534.1670994/94‑1 (MQ=60)
TGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAG < SRR4302534.4055683/94‑1 (MQ=60)
TGTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAG < SRR4302534.1740972/94‑1 (MQ=60)
GTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGA < SRR4302534.2602031/94‑1 (MQ=60)
GTAAACACTGATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGA > SRR4302534.4435766/1‑94 (MQ=60)
AAACACTGATGGCCCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAA < SRR4302534.2233676/94‑1 (MQ=60)
ACTGATT‑‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATT < SRR4302534.4412460/94‑1 (MQ=60)
CTGATTG‑CCCCCCCCCCGTT‑GATGGGGAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATT > SRR4302534.735891/1‑94 (MQ=60)
ATTG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATG < SRR4302534.5487183/94‑1 (MQ=60)
TG‑CCCCCCCGCCGTT‑GATGGGTAAAATAGCCGAAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGAC < SRR4302534.4104646/94‑1 (MQ=60)
TG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCCATTTTTCGTTTTCAAAAAGCCCGGCGCGATGCCGCTTACTCAAGAAGAAAAAATTATGAC > SRR4302534.1977011/1‑94 (MQ=60)
TG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAATAATTATGAC < SRR4302534.6456250/94‑1 (MQ=60)
TG‑CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGAC < SRR4302534.389638/94‑1 (MQ=60)
G‑CCCCCCCCCCGTT‑GATGGGGAAAATAGCCGCAATTTTTCGTTTTTAACAAGAGCGGCGCGATGCCGCTTACTCAAGAAGAAAAAATTATGACG > SRR4302534.4116456/1‑94 (MQ=60)
CCCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAACCGCGGGGCGATGCCGCTTACTCAAGAAGAAAGAATTATGAGGT > SRR4302534.3326632/1‑94 (MQ=60)
CCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGTCGTT > SRR4302534.3856227/1‑94 (MQ=60)
CCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTT < SRR4302534.4859458/94‑1 (MQ=60)
CCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAACTATGACGTT < SRR4302534.6476913/94‑1 (MQ=60)
CCCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAAATATTACGTT > SRR4302534.1582892/1‑94 (MQ=60)
CCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTG > SRR4302534.373267/1‑94 (MQ=60)
CCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTG > SRR4302534.2778680/1‑94 (MQ=60)
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ACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTCCCCCCCGTT‑GATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTG > NC_000913/4606805‑4606991
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
