Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,614,238	G→T	L133I (CTA→ATA)	yjjI ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,614,238	0	G	T	100.0%	1054.1 / NA	267	L133I (CTA→ATA)	yjjI	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (148/119); total (148/119)

Only 100 of 269 total aligned reads displayed.

CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG  >  NC_000913/4614148‑4614327

cGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATaa                                                                                         <  2:3001630/93‑1 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        <  2:3464886/93‑1 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        >  1:3159010/1‑93 (MQ=255)

 gATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAt                                                                                        >  2:3506212/1‑93 (MQ=255)

  atatTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAtt                                                                                       <  1:955866/93‑1 (MQ=255)

  atatTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGGAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATaaat                                                                                       >  1:5741306/1‑91 (MQ=255)

   tatTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTc                                                                                      <  1:4821027/93‑1 (MQ=255)

       ggCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAAc                                                                                  <  2:1160503/93‑1 (MQ=255)

          gTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATa                                                                               >  1:4949500/1‑93 (MQ=255)

           tGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACAtcc                                                                              <  1:1711733/93‑3 (MQ=255)

           tGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATAc                                                                              <  1:4389195/93‑1 (MQ=255)

            gCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTTACATACg                                                                             >  1:862944/1‑93 (MQ=255)

               tAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGtt                                                                          <  1:5387847/93‑1 (MQ=255)

                aaaGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTTACATACGGTTg                                                                         >  1:6129223/1‑93 (MQ=255)

                   ggCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaa                                                                      <  1:4566356/93‑1 (MQ=255)

                   ggCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaa                                                                      <  2:471266/93‑1 (MQ=255)

                    gCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaac                                                                     <  1:591850/93‑1 (MQ=255)

                     cGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaaca                                                                    >  1:1811974/1‑93 (MQ=255)

                      gTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaacaa                                                                   >  1:5308244/1‑93 (MQ=255)

                      gTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaacaa                                                                   >  2:5104004/1‑93 (MQ=255)

                      gTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGcaacaa                                                                   >  2:6022668/1‑93 (MQ=255)

                         tGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTTTAACATACGGTTGCAACAACGc                                                                >  2:4620404/1‑93 (MQ=255)

                         tGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGc                                                                >  1:989089/1‑93 (MQ=255)

                            cAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATc                                                             <  1:4138315/93‑1 (MQ=255)

                             aGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAGCATGCGGTTGCAACAACGCATcc                                                            <  2:2849082/93‑1 (MQ=255)

                             aGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCCATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATcc                                                            <  2:3116690/93‑1 (MQ=255)

                              gggTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCa                                                           >  2:3933266/1‑93 (MQ=255)

                               ggTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAg                                                          >  1:3355481/1‑93 (MQ=255)

                                gTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGt                                                         <  2:6403665/93‑1 (MQ=255)

                                gTTCTGCCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGt                                                         >  2:6829/1‑93 (MQ=255)

                                     gTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGccc                                                    >  2:3143283/1‑93 (MQ=255)

                                     gTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGccc                                                    <  2:2159491/93‑1 (MQ=255)

                                      tCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGcccc                                                   <  2:3314783/93‑1 (MQ=255)

                                      tCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGcccc                                                   >  2:1246274/1‑93 (MQ=255)

                                         aGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAgg                                                <  1:3654014/93‑1 (MQ=255)

                                         aGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAgg                                                >  2:2288260/1‑93 (MQ=255)

                                         aGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAgg                                                >  2:2895789/1‑93 (MQ=255)

                                           gTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTa                                              >  1:5633158/1‑93 (MQ=255)

                                            tAACGCCAGAAGCGTTTTATTCGAATATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAg                                             <  1:1901793/93‑1 (MQ=255)

                                             aaCGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGa                                            <  1:2486077/93‑1 (MQ=255)

                                              aCGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAc                                           >  1:3803454/1‑93 (MQ=255)

                                               cGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAcc                                          <  2:2405032/93‑1 (MQ=255)

                                               cGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAcc                                          <  1:3465829/93‑1 (MQ=255)

                                               cGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAcc                                          <  1:2924551/93‑1 (MQ=255)

                                                gCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCg                                         <  2:3753647/93‑1 (MQ=255)

                                                gCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCg                                         >  1:3964673/1‑93 (MQ=255)

                                                 ccAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCgg                                        >  2:2660180/1‑93 (MQ=255)

                                                  cAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGc                                       >  1:384942/1‑93 (MQ=255)

                                                   aGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCa                                      >  2:3489179/1‑93 (MQ=255)

                                                   aGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCa                                      >  2:1510163/1‑93 (MQ=255)

                                                     aaaCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATc                                    <  2:6327675/93‑1 (MQ=255)

                                                      aaCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACACCGCATCCAGTTGCCCCAGGTAGACCGGCATCg                                   >  1:5959576/1‑93 (MQ=255)

                                                      aaCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCg                                   >  1:4413118/1‑93 (MQ=255)

                                                      aaCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCg                                   >  2:3251594/1‑93 (MQ=255)

                                                       aCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGa                                  >  2:2251507/1‑93 (MQ=255)

                                                       aCGGTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGa                                  <  2:1810684/93‑1 (MQ=255)

                                                          ttttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtgt                               <  1:1194476/93‑1 (MQ=255)

                                                          ttttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtgt                               <  2:4194159/93‑1 (MQ=255)

                                                          ttttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGAtgt                               <  2:3036202/93‑1 (MQ=255)

                                                            ttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGa                             >  2:1697174/1‑93 (MQ=255)

                                                            ttATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGa                             <  2:2563616/93‑1 (MQ=255)

                                                             tATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAc                            >  1:1046191/1‑93 (MQ=255)

                                                             tATTCGAACATCGATCTCGTCTTGTGTTATAATTATCACAAACGGTTGCAACAACGCATCCAGCTGCCCCAGGTAGACCGGCATCGATGTGAc                            >  1:3083019/1‑93 (MQ=255)

                                                              aTTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAcc                           <  1:635465/93‑1 (MQ=255)

                                                                tCGACCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGa                         <  1:2167729/93‑1 (MQ=255)

                                                                 cGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGAc                        <  1:4130506/93‑1 (MQ=255)

                                                                  gAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACg                       <  2:5637335/93‑1 (MQ=255)

                                                                  gAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACg                       <  2:5258711/93‑1 (MQ=255)

                                                                  gAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACg                       <  2:4742411/93‑1 (MQ=255)

                                                                  gAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGCTGCCCCAGGTAGACCGGCATCGATGTGACCGAca                       >  2:6199670/1‑92 (MQ=255)

                                                                   aaCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACgg                      >  1:2439453/1‑93 (MQ=255)

                                                                    aCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGt                     >  2:4178660/1‑93 (MQ=255)

                                                                     cATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTa                    <  1:2823848/93‑1 (MQ=255)

                                                                      aTCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAc                   >  2:888645/1‑93 (MQ=255)

                                                                      aTCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAc                   >  1:542514/1‑93 (MQ=255)

                                                                       tCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACg                  >  1:3570821/1‑93 (MQ=255)

                                                                        cGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgt                 >  2:1198422/1‑93 (MQ=255)

                                                                         gATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgtg                >  2:503578/1‑93 (MQ=255)

                                                                          aTCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgtgg               >  1:1456144/1‑93 (MQ=255)

                                                                          aTCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGGACgtgg               >  1:771511/1‑93 (MQ=255)

                                                                           tctcGTCTTGTGTTATAATTCTAACATCCGGTTGCAACACCGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgtggt              <  2:386450/93‑1 (MQ=255)

                                                                           tctcGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgtggt              <  1:5078047/93‑1 (MQ=255)

                                                                           tctcGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACgtggg              >  2:5809391/1‑92 (MQ=255)

                                                                             tcGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGtggtgg            >  2:3888916/1‑93 (MQ=255)

                                                                              cGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTggtggt           >  2:1562579/1‑93 (MQ=255)

                                                                              cGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTggtggt           >  1:5499948/1‑93 (MQ=255)

                                                                              cGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGCACGTggtggt           >  1:469136/1‑93 (MQ=255)

                                                                               gTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTa          >  1:1080217/1‑93 (MQ=255)

                                                                               gTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTa          >  2:2538887/1‑93 (MQ=255)

                                                                               gTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACAGGCATCGATGTGACCGACGGTACGTGGTGGTa          >  2:1929968/1‑93 (MQ=255)

                                                                               gTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGAAGACCGGCATCGATGTGACCGACGGACCGGGGTGGTa          >  2:2075288/1‑93 (MQ=255)

                                                                                tCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTaa         >  2:6031969/1‑93 (MQ=255)

                                                                                 cTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTaaa        >  1:2265316/1‑93 (MQ=255)

                                                                                 cTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTaaa        >  1:1595714/1‑93 (MQ=255)

                                                                                   tgtgTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGa      >  1:5202768/1‑93 (MQ=255)

                                                                                    gtgtTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGaa     >  2:5546757/1‑93 (MQ=255)

                                                                                     tgtTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAAt    >  2:4858354/1‑93 (MQ=255)

                                                                                       ttATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATgg  <  2:5471997/93‑1 (MQ=255)

                                                                                       ttATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATgg  >  2:2028425/1‑93 (MQ=255)

                                                                                       ttATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATgg  >  2:2944128/1‑93 (MQ=255)

CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG  >  NC_000913/4614148‑4614327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAG  >  NC_000913/4614145‑4614331

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAT                                                                                               >  SRR4302534.3862641/1‑94 (MQ=60)

 GCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATA                                                                                              >  SRR4302534.4187609/1‑94 (MQ=60)

  CCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAA                                                                                             >  SRR4302534.4463686/1‑94 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            >  SRR4302534.3242233/1‑94 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            >  SRR4302534.390927/1‑94 (MQ=60)

   CGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAAT                                                                                            <  SRR4302534.2927854/94‑1 (MQ=60)

    CATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATT                                                                                           <  SRR4302534.1818785/94‑1 (MQ=60)

     ATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTC                                                                                          >  SRR4302534.424137/1‑94 (MQ=60)

     ATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTC                                                                                          <  SRR4302534.980202/94‑1 (MQ=60)

     ATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTC                                                                                          >  SRR4302534.4577431/1‑94 (MQ=60)

      TATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCT                                                                                         <  SRR4302534.4951866/94‑1 (MQ=60)

          GGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGGAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATGATTCTAACA                                                                                     >  SRR4302534.5296791/1‑94 (MQ=60)

           GCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACAT                                                                                    <  SRR4302534.1569121/94‑1 (MQ=60)

           GCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACAT                                                                                    <  SRR4302534.8912/94‑1 (MQ=60)

            CGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATA                                                                                   >  SRR4302534.4877275/1‑94 (MQ=60)

            CGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATA                                                                                   <  SRR4302534.2058214/94‑1 (MQ=60)

            CGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATA                                                                                   >  SRR4302534.5083555/1‑94 (MQ=60)

             GTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATAC                                                                                  >  SRR4302534.636434/1‑94 (MQ=60)

             GTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATAC                                                                                  <  SRR4302534.515297/94‑1 (MQ=60)

              TGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTTACATACG                                                                                 >  SRR4302534.884733/1‑94 (MQ=60)

              TGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATCCG                                                                                 <  SRR4302534.1756206/94‑1 (MQ=60)

              TGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACG                                                                                 <  SRR4302534.3026600/94‑1 (MQ=60)

              TGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACG                                                                                 <  SRR4302534.4507547/94‑1 (MQ=60)

              TGCATAAAGGCGTCTGGCAGGGGTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACG                                                                                 >  SRR4302534.4007534/1‑94 (MQ=60)

               GCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGG                                                                                <  SRR4302534.4511873/94‑1 (MQ=60)

               GCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGG                                                                                <  SRR4302534.252869/94‑1 (MQ=60)

               GCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGG                                                                                <  SRR4302534.1294030/94‑1 (MQ=60)

                 ATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTT                                                                              >  SRR4302534.5553770/1‑94 (MQ=60)

                 ATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTT                                                                              <  SRR4302534.2227675/94‑1 (MQ=60)

                 ATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTT                                                                              >  SRR4302534.1694552/1‑94 (MQ=60)

                 ATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTT                                                                              <  SRR4302534.3632530/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTTACATACGGTTG                                                                             >  SRR4302534.6295952/1‑94 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTG                                                                             <  SRR4302534.6088438/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTG                                                                             <  SRR4302534.5677911/94‑1 (MQ=60)

                  TAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTG                                                                             <  SRR4302534.5532959/94‑1 (MQ=60)

                    AAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCA                                                                           <  SRR4302534.1725978/94‑1 (MQ=60)

                     AGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAA                                                                          >  SRR4302534.1075956/1‑94 (MQ=60)

                     AGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGCTTGCAA                                                                          >  SRR4302534.5277900/1‑94 (MQ=60)

                      GGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAAC                                                                         <  SRR4302534.4690149/94‑1 (MQ=60)

                       GCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACA                                                                        >  SRR4302534.1859035/1‑94 (MQ=60)

                       GCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACA                                                                        <  SRR4302534.606302/94‑1 (MQ=60)

                        CGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAA                                                                       >  SRR4302534.5451467/1‑94 (MQ=60)

                         GTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAAC                                                                      <  SRR4302534.4240213/94‑1 (MQ=60)

                         GTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAAC                                                                      <  SRR4302534.4578313/94‑1 (MQ=60)

                           CTGGCAGGGTTGTGTCGGGGTCACGCCAGGAAAGTTTTATTCGAACATCGATCTAGTCTTGTGTTTTAATTCTAACATACGGataccaacacgc                                                                    >  SRR4302534.4170726/1‑82 (MQ=43)

                           CTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGC                                                                    >  SRR4302534.1014393/1‑94 (MQ=60)

                           CTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGGTGCAACAACGC                                                                    >  SRR4302534.802583/1‑94 (MQ=60)

                            TGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCA                                                                   >  SRR4302534.4244258/1‑94 (MQ=60)

                            TGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCA                                                                   <  SRR4302534.4841802/94‑1 (MQ=60)

                               CAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCC                                                                <  SRR4302534.4249998/94‑1 (MQ=60)

                               CAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCC                                                                <  SRR4302534.6191166/94‑1 (MQ=60)

                                AGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCA                                                               >  SRR4302534.2120759/1‑94 (MQ=60)

                                AGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCA                                                               >  SRR4302534.1924224/1‑94 (MQ=60)

                                AGGGTTCTGTCGAGGGAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGTTTGCAACGACGCATCCA                                                               >  SRR4302534.2888371/1‑94 (MQ=60)

                                 GGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAG                                                              >  SRR4302534.3445342/1‑94 (MQ=60)

                                   GTTCTGTCGAGGTAACGCCAGAAGCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTT                                                            <  SRR4302534.5808515/94‑1 (MQ=60)

                                          CGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAG                                                     <  SRR4302534.6605077/94‑1 (MQ=60)

                                           GAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGG                                                    >  SRR4302534.744848/1‑94 (MQ=60)

                                           GAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGG                                                    <  SRR4302534.4714079/94‑1 (MQ=60)

                                           GAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGG                                                    <  SRR4302534.3712305/94‑1 (MQ=60)

                                           GAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGG                                                    <  SRR4302534.509365/94‑1 (MQ=60)

                                            AGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGT                                                   <  SRR4302534.3752207/94‑1 (MQ=60)

                                             GGTAACGCTAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTA                                                  <  SRR4302534.3209679/94‑1 (MQ=60)

                                             GGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTA                                                  >  SRR4302534.5785621/1‑94 (MQ=60)

                                              GTAACGCCAGAACCGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAG                                                 <  SRR4302534.84108/94‑1 (MQ=60)

                                               TAACGCCAGAAGCGTTTTATTCGAATATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGA                                                <  SRR4302534.1951390/94‑1 (MQ=60)

                                                AACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAC                                               >  SRR4302534.6044725/1‑94 (MQ=60)

                                                AACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAC                                               >  SRR4302534.3905584/1‑94 (MQ=60)

                                                AACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGAC                                               <  SRR4302534.2552122/94‑1 (MQ=60)

                                                 ACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACC                                              <  SRR4302534.1149697/94‑1 (MQ=60)

                                                 ACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGCTTGCAACAACGCATCCAGTTGCCCCAGGTAGACC                                              <  SRR4302534.6635859/94‑1 (MQ=60)

                                                  CGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCG                                             <  SRR4302534.3001313/94‑1 (MQ=60)

                                                  CGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCG                                             >  SRR4302534.4070811/1‑94 (MQ=60)

                                                  CGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCG                                             <  SRR4302534.3558997/94‑1 (MQ=60)

                                                   GCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGG                                            <  SRR4302534.1386561/94‑1 (MQ=60)

                                                   GCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGG                                            <  SRR4302534.5422030/94‑1 (MQ=60)

                                                    CCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGC                                           >  SRR4302534.394792/1‑94 (MQ=60)

                                                    CCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGC                                           >  SRR4302534.3278336/1‑94 (MQ=60)

                                                     CAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCA                                          >  SRR4302534.5566528/1‑94 (MQ=60)

                                                     CAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCA                                          >  SRR4302534.4067520/1‑94 (MQ=60)

                                                     CAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCA                                          >  SRR4302534.3709163/1‑94 (MQ=60)

                                                      AGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAT                                         >  SRR4302534.2551719/1‑94 (MQ=60)

                                                      AGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCAT                                         >  SRR4302534.5714378/1‑94 (MQ=60)

                                                       GAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATC                                        <  SRR4302534.4965545/94‑1 (MQ=60)

                                                       GAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATC                                        >  SRR4302534.1131243/1‑94 (MQ=60)

                                                        AAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACACCGCATCCAGTTGCCCCAGGTAGACCGGCATCG                                       >  SRR4302534.6121387/1‑94 (MQ=60)

                                                        AAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCG                                       >  SRR4302534.4532245/1‑94 (MQ=60)

                                                        AAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCG                                       >  SRR4302534.3639612/1‑94 (MQ=60)

                                                         AACGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGA                                      >  SRR4302534.5532935/1‑94 (MQ=60)

                                                           CGTTTTATTCGACCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATG                                    <  SRR4302534.6105025/94‑1 (MQ=60)

                                                           CGTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATG                                    >  SRR4302534.962803/1‑94 (MQ=60)

                                                            GTTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGT                                   <  SRR4302534.1856548/94‑1 (MQ=60)

                                                             TTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTG                                  <  SRR4302534.1225900/94‑1 (MQ=60)

                                                             TTTTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTG                                  <  SRR4302534.4426211/94‑1 (MQ=60)

                                                               TTATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGAC                                >  SRR4302534.1073231/1‑94 (MQ=60)

                                                               TTATTCGAACATCGATCTCGTCTTGTGTTATAATTATCACAAACGGTTGCAACAACGCATCCAGCTGCCCCAGGTAGACCGGCATCGATGTGAC                                >  SRR4302534.3164022/1‑94 (MQ=60)

                                                                TATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACC                               <  SRR4302534.620996/94‑1 (MQ=60)

                                                                 ATTCGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCG                              <  SRR4302534.650888/94‑1 (MQ=60)

                                                                   TCGACCATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGAC                            <  SRR4302534.2224982/94‑1 (MQ=60)

                                                                    CGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACG                           >  SRR4302534.3387380/1‑94 (MQ=60)

                                                                    CGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACG                           <  SRR4302534.4241824/94‑1 (MQ=60)

                                                                    CGAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACG                           >  SRR4302534.3949988/1‑94 (MQ=60)

                                                                     GAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGG                          >  SRR4302534.2504289/1‑94 (MQ=60)

                                                                     GAACATCGATCTCGTCTTGTGTTATAATTCTAACATACGCTTGCAACAACGCATCCAGTTGCCCAAGGTAGACCGGCATCGATGTGAACGACGG                          >  SRR4302534.3226502/1‑94 (MQ=60)

                                                                      AACATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGT                         <  SRR4302534.37702/94‑1 (MQ=60)

                                                                      AACAACGATCTCGTCTTGTGTTATAATTCTAACATATGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGT                         >  SRR4302534.2252918/1‑94 (MQ=60)

                                                                        CATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAC                       >  SRR4302534.555926/1‑94 (MQ=60)

                                                                        CATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTAC                       <  SRR4302534.2898083/94‑1 (MQ=60)

                                                                         ATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACG                      >  SRR4302534.3666868/1‑94 (MQ=60)

                                                                         ATCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGCGACCGACGGTACG                      <  SRR4302534.5890938/94‑1 (MQ=60)

                                                                          TCGATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGG                     >  SRR4302534.4751130/1‑94 (MQ=60)

                                                                            GATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGG                   >  SRR4302534.3052906/1‑94 (MQ=60)

                                                                            GATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGG                   >  SRR4302534.1494454/1‑94 (MQ=60)

                                                                            GATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGGACGTGG                   >  SRR4302534.790715/1‑94 (MQ=60)

                                                                             ATCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGT                  >  SRR4302534.2456217/1‑94 (MQ=60)

                                                                              TCTCGTCTTGTGTTATAATTCTAAGATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTG                 <  SRR4302534.3454543/94‑1 (MQ=60)

                                                                              TCTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTG                 <  SRR4302534.5215126/94‑1 (MQ=60)

                                                                               CTCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGG                >  SRR4302534.5587193/1‑94 (MQ=60)

                                                                                TCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGT               >  SRR4302534.5648269/1‑94 (MQ=60)

                                                                                TCGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGCACGTGGTGGT               >  SRR4302534.480956/1‑94 (MQ=60)

                                                                                 CGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTA              >  SRR4302534.1108293/1‑94 (MQ=60)

                                                                                 CGTCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTA              >  SRR4302534.2806278/1‑94 (MQ=60)

                                                                                   TCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAA            >  SRR4302534.1637411/1‑94 (MQ=60)

                                                                                   TCTTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAA            >  SRR4302534.2325395/1‑94 (MQ=60)

                                                                                     TTGTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGA          >  SRR4302534.5343124/1‑94 (MQ=60)

                                                                                       GTGTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAAT        <  SRR4302534.986951/94‑1 (MQ=60)

                                                                                         GTTATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGG      >  SRR4302534.5494615/1‑94 (MQ=60)

                                                                                           TATAATTTTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTC    <  SRR4302534.5344451/94‑1 (MQ=60)

                                                                                            ATAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGTTGGTAAAGAATGGTCA   <  SRR4302534.435644/94‑1 (MQ=60)

                                                                                             TAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAG  <  SRR4302534.4946830/94‑1 (MQ=60)

GGCCGATATTGGCGTGCATAAAGGCGTCTGGCAGGGTTCTGTCGAGGTAACGCCAGAAACGTTTTATTCGAACATCGATCTCGTCTTGTGTTAGAATTCTAACATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAG  >  NC_000913/4614145‑4614331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`