Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F2 I229 R1
|
214 |
17.4 |
943020 |
97.5% |
919444 |
87.1 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NZ_CP009273 |
2,511,652 |
A→G |
noncoding (59/76 nt) |
BW25113_RS12505 ← |
tRNA‑Ala |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NZ_CP009273 | 2,511,652 | 0 | A | G | 100.0%
| 43.9
/ NA
| 15 | noncoding (59/76 nt) | BW25113_RS12505 | tRNA‑Ala |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (8/7); total (8/7) |
AAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTC > NZ_CP009273/2511567‑2511713
|
aaGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGa < 2:424171/90‑1 (MQ=255)
tctcCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCt > 2:153225/1‑90 (MQ=255)
tctcCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCt > 2:331339/1‑90 (MQ=255)
aGCCCCACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGcatgccat > 2:422680/1‑90 (MQ=255)
cACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAg > 2:90030/1‑90 (MQ=255)
gCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGctct > 1:454293/1‑90 (MQ=255)
gTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTg > 1:110240/1‑90 (MQ=255)
gTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTg < 1:64082/90‑1 (MQ=255)
tACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGa < 2:205609/90‑1 (MQ=255)
tACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGa < 2:424730/90‑1 (MQ=255)
aaGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCta > 1:305151/1‑90 (MQ=255)
gCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGa > 1:176424/1‑80 (MQ=255)
gCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGa < 2:176424/80‑1 (MQ=255)
gggTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGt < 2:406425/90‑1 (MQ=255)
ggTGCAAAATTTGGTGGAGCTAAGCGGGGTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTc < 2:454293/90‑1 (MQ=255)
|
AAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGGGTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTC > NZ_CP009273/2511567‑2511713
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A