Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F2 I194 R1
|
197 |
32.2 |
1845014 |
95.2% |
1756453 |
85.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
3,356,378 |
(A)8→7 |
coding (213/2382 nt) |
yhcD → |
fimbrial biogenesis outer membrane usher protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 3,356,371 | 0 | A | . | 96.5%
| 221.9
/ 2.1
| 58 | coding (206/2382 nt) | yhcD | fimbrial biogenesis outer membrane usher protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base . (46/10); total (48/10) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.69e-01 |
GTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAA > NZ_CP009273/3356284‑3356455
|
gtgtAGATCCTAATATATCGCATTATTTTTCCCGTTCAACCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaa > 2:461924/1‑90 (MQ=255)
tAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaa < 2:318370/90‑1 (MQ=255)
aGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaa > 2:61586/1‑90 (MQ=255)
cTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCaa > 2:79598/1‑90 (MQ=255)
tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAc > 2:915292/1‑90 (MQ=255)
tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAc > 1:459539/1‑90 (MQ=255)
tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAc > 1:532268/1‑90 (MQ=255)
atatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACAt < 2:829429/90‑1 (MQ=255)
atatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACAt > 1:737554/1‑90 (MQ=255)
tatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAc < 1:386286/85‑1 (MQ=255)
tatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAc > 2:386286/1‑85 (MQ=255)
tatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGc > 2:41731/1‑90 (MQ=255)
tatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGc > 1:320980/1‑90 (MQ=255)
tatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGc > 2:15394/1‑90 (MQ=255)
atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCt > 1:252375/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 2:232007/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 2:297905/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 2:262485/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 2:917398/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 1:830070/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa < 1:517775/90‑1 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 2:559225/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 2:770527/1‑90 (MQ=255)
tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTa > 1:388672/1‑90 (MQ=255)
gCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTAcg > 1:746805/1‑90 (MQ=255)
gCATTATTTTTCCCGTCCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTAcg > 2:524255/1‑90 (MQ=255)
attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCtt < 2:513683/90‑1 (MQ=255)
attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCtt > 2:692403/1‑90 (MQ=255)
attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCtt < 1:232865/90‑1 (MQ=255)
tCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTtgatg > 2:437212/1‑90 (MQ=255)
cGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGaaa > 1:682051/1‑90 (MQ=255)
ttCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAAt > 2:112546/1‑90 (MQ=255)
gCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCg > 2:81728/1‑90 (MQ=255)
ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAtt > 1:431691/1‑90 (MQ=255)
ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAtt < 2:362845/90‑1 (MQ=255)
ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAtt < 1:614410/90‑1 (MQ=255)
ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAtt < 2:508286/90‑1 (MQ=255)
aGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAt > 1:773432/1‑90 (MQ=255)
aGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAt > 1:45114/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc > 2:620000/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt > 1:594855/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt > 1:239391/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt > 2:8807/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt > 1:388260/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt > 1:436270/1‑90 (MQ=255)
cACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt > 1:856747/1‑90 (MQ=255)
tGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGca > 2:738893/1‑90 (MQ=255)
aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac > 1:680691/1‑90 (MQ=255)
gTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg > 2:399675/1‑90 (MQ=255)
gTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg > 1:366880/1‑90 (MQ=255)
tATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc < 2:424188/65‑1 (MQ=255)
tATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc > 1:424188/1‑65 (MQ=255)
aTCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc < 2:12229/90‑1 (MQ=255)
cAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCg > 1:724258/1‑90 (MQ=255)
cAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg > 1:565378/1‑90 (MQ=255)
gTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGtt > 2:189686/1‑90 (MQ=255)
aTGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaa > 1:504158/1‑90 (MQ=255)
aTGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaa > 1:674431/1‑90 (MQ=255)
aTGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaa > 1:717026/1‑90 (MQ=255)
aTGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaa > 2:180715/1‑90 (MQ=255)
aTGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaa > 1:157084/1‑90 (MQ=255)
|
GTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAA > NZ_CP009273/3356284‑3356455
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAA > NZ_CP009273/3356284‑3356472
|
GTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAC > SRR3722072.541862/1‑100 (MQ=60)
GTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAAC > SRR3722072.467965/1‑100 (MQ=60)
GTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACAT > SRR3722072.750629/1‑100 (MQ=60)
GATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGC > SRR3722072.326592/1‑100 (MQ=60)
ATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCT > SRR3722072.256648/1‑100 (MQ=60)
TCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTA > SRR3722072.844476/1‑100 (MQ=60)
TCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTA > SRR3722072.395640/1‑100 (MQ=60)
CTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACG > SRR3722072.760000/1‑100 (MQ=60)
TAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGC < SRR3722072.393196/100‑1 (MQ=60)
TCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGA < SRR3722072.527095/100‑1 (MQ=60)
TTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAA > SRR3722072.694253/1‑100 (MQ=60)
ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAAT < SRR3722072.236756/100‑1 (MQ=60)
GTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATT > SRR3722072.439552/1‑100 (MQ=60)
GTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAT > SRR3722072.45937/1‑100 (MQ=60)
GTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAT > SRR3722072.787018/1‑100 (MQ=60)
TTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATC < SRR3722072.625365/100‑1 (MQ=60)
GGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCT > SRR3722072.871535/1‑100 (MQ=60)
GGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCT > SRR3722072.444219/1‑100 (MQ=60)
GGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCT > SRR3722072.243403/1‑100 (MQ=60)
GGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCT > SRR3722072.605466/1‑100 (MQ=60)
GGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCT > SRR3722072.395213/1‑100 (MQ=60)
ATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAAC > SRR3722072.692869/1‑100 (MQ=60)
TTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAG > SRR3722072.373400/1‑100 (MQ=60)
TCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCctgtctcttatacac > SRR3722072.431901/1‑85 (MQ=60)
CTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCG > SRR3722072.737122/1‑100 (MQ=60)
CTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGG > SRR3722072.575510/1‑100 (MQ=60)
GTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAA > SRR3722072.686508/1‑100 (MQ=60)
GTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAA > SRR3722072.729785/1‑100 (MQ=60)
GTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAA > SRR3722072.159834/1‑100 (MQ=60)
GTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAA > SRR3722072.513256/1‑100 (MQ=60)
TCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAT > SRR3722072.688426/1‑100 (MQ=60)
AGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTC > SRR3722072.567762/1‑100 (MQ=60)
AAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAA > SRR3722072.352951/1‑100 (MQ=60)
|
GTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAA > NZ_CP009273/3356284‑3356472
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
