Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F2 I199 R1 220 57.5 3163680 97.0% 3068769 86.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 886,189 A→G G7G (GGT→GGC grxA ← glutaredoxin 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273886,1890AG100.0% 189.2 / NA 57G7G (GGT→GGCgrxAglutaredoxin 1
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/21);  total (36/21)

ATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGT  >  NZ_CP009273/886105‑886274
                                                                                    |                                                                                     
atactgatactgAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCaaa                                                                                  <  1:447670/90‑1 (MQ=255)
 tactgatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCaaaa                                                                                 >  2:1205568/1‑90 (MQ=255)
   ctgatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAAt                                                                               >  1:349671/1‑90 (MQ=255)
    tgatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATa                                                                              >  2:1271143/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCGGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  2:456031/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  1:519014/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  1:1241321/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  1:1387185/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  1:1539583/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  1:921411/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             >  1:701555/1‑90 (MQ=255)
     gatactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATaa                                                                             <  1:242922/90‑1 (MQ=255)
      atactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAAc                                                                            >  2:848120/1‑90 (MQ=255)
      atactgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAAc                                                                            >  1:467057/1‑90 (MQ=255)
        actgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACgg                                                                          >  2:1107493/1‑90 (MQ=255)
          tgaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGtt                                                                        <  2:216872/90‑1 (MQ=255)
           gaAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGttt                                                                       <  2:519014/90‑1 (MQ=255)
               atcatcGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCat                                                                   <  1:990334/90‑1 (MQ=255)
               atcatcGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCat                                                                   <  1:1271143/90‑1 (MQ=255)
               atcatcGCGTTCATTGCTCAATTTCTCAGCCAGATCTTATGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCat                                                                   <  2:790107/90‑1 (MQ=255)
                  atcGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCattat                                                                >  2:1513786/1‑90 (MQ=255)
                     gcgTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTtc                                                             >  2:1061264/1‑90 (MQ=255)
                       gTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTtctc                                                           <  1:812783/90‑1 (MQ=255)
                       gTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTtctc                                                           >  1:766437/1‑90 (MQ=255)
                              gCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTGTTTCTCTCCTCAt                                                    <  1:427613/90‑1 (MQ=255)
                               cTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATa                                                   <  2:596226/90‑1 (MQ=255)
                                    tttCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGAttt                                              <  1:80925/90‑1 (MQ=255)
                                           gCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTg                                       >  2:600401/1‑90 (MQ=255)
                                                    tttGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTACATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCa                              <  1:631007/90‑1 (MQ=255)
                                                     ttGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCAc                             >  2:664295/1‑90 (MQ=255)
                                                       gcacgcacACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGc                           <  2:467057/90‑1 (MQ=255)
                                                       gcacgcacACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCt                          <  2:1125796/90‑1 (MQ=255)
                                                         acgcacACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTa                         >  1:1241166/1‑90 (MQ=255)
                                                                  gTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTAtt                <  1:600401/90‑1 (MQ=255)
                                                                      gggCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCt            >  1:1103603/1‑90 (MQ=255)
                                                                      gggCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCt            >  2:1153953/1‑90 (MQ=255)
                                                                      gggCAACCCGAACGGCCAAAAATAACGGCTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCt            >  2:724047/1‑90 (MQ=255)
                                                                        gCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGcc                                         >  1:456353/1‑59 (MQ=255)
                                                                        gCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGcc                                         <  2:456353/59‑1 (MQ=255)
                                                                        gCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGa          >  1:121395/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:1410539/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  1:698936/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:771891/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  1:1560691/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  1:105364/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  1:1472644/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:1355031/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:358573/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:341255/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:225170/1‑90 (MQ=255)
                                                                          aaCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa        >  2:1147025/1‑90 (MQ=255)
                                                                           aCCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAg       <  1:1153953/90‑1 (MQ=255)
                                                                            cccGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGt      <  2:1241321/90‑1 (MQ=255)
                                                                            cccGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGt      <  2:1472644/90‑1 (MQ=255)
                                                                            cccGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGt      <  1:1255489/90‑1 (MQ=255)
                                                                             ccGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTa     <  2:1341448/90‑1 (MQ=255)
                                                                                aaCGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGt  >  1:191951/1‑90 (MQ=255)
                                                                                    |                                                                                     
ATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGT  >  NZ_CP009273/886105‑886274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TATCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGTTTAACC  >  NZ_CP009273/886098‑886280
                                                                                           |                                                                                           
TATCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAAT                                                                                     >  SRR3722078.353958/1‑100 (MQ=60)
  TCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAA                                                                                   >  SRR3722078.525157/1‑100 (MQ=60)
  TCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAA                                                                                   >  SRR3722078.934009/1‑100 (MQ=60)
  TCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAA                                                                                   >  SRR3722078.1260931/1‑100 (MQ=60)
  TCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAA                                                                                   >  SRR3722078.710009/1‑100 (MQ=60)
  TCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAA                                                                                   >  SRR3722078.1409590/1‑100 (MQ=60)
  TCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAA                                                                                   >  SRR3722078.1564684/1‑100 (MQ=60)
   CTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAAC                                                                                  >  SRR3722078.472624/1‑100 (MQ=60)
       ATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTT                                                                              <  SRR3722078.453027/100‑1 (MQ=60)
            GATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCAT                                                                         <  SRR3722078.245893/100‑1 (MQ=60)
                 ccgagatctacacgaccgccatcgtcggcagcgtcagatgtgtataagagacagCAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTT                                                                    <  SRR3722078.1155005/46‑1 (MQ=60)
                    AAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTC                                                                 >  SRR3722078.776316/1‑100 (MQ=60)
                      ATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTC                                                               <  SRR3722078.1004710/100‑1 (MQ=60)
                      ATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTC                                                               <  SRR3722078.1291311/100‑1 (MQ=60)
                              GTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGA                                                       <  SRR3722078.823534/100‑1 (MQ=60)
                                     GCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTGTTTCTCTCCTCATAGATTTATGC                                                <  SRR3722078.432762/100‑1 (MQ=60)
                                      atcaacttccCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAAACCGAACGGCCAAAACTAAGGGTTTCCATTATTTCTCagccgatagatttatgtg                                               <  SRR3722078.1286579/90‑19 (MQ=60)
                                           TTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAA                                          <  SRR3722078.81872/100‑1 (MQ=60)
                                                      GATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTA                               >  SRR3722078.1260771/1‑100 (MQ=60)
                                                           TTTGCACGCACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTACATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATG                          <  SRR3722078.638267/100‑1 (MQ=60)
                                                                   CACACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCT                  >  SRR3722078.1120421/1‑100 (MQ=60)
                                                                     CACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCctgtctcttatacacatctga                >  SRR3722078.461803/1‑79 (MQ=60)
                                                                     CACAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGA                >  SRR3722078.122810/1‑100 (MQ=60)
                                                                       CAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAA              >  SRR3722078.106616/1‑100 (MQ=60)
                                                                       CAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAA              >  SRR3722078.707339/1‑100 (MQ=60)
                                                                       CAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAA              >  SRR3722078.1586090/1‑100 (MQ=60)
                                                                       CAGTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAA              >  SRR3722078.1496674/1‑100 (MQ=60)
                                                                         GTAAGGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGT            <  SRR3722078.607349/100‑1 (MQ=60)
                                                                             GGGCAACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGT        >  SRR3722078.194235/1‑100 (MQ=60)
                                                                                  ACCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGTTTAAC   <  SRR3722078.1171776/100‑1 (MQ=60)
                                                                                   CCCGAACGGCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGTTTAACC  <  SRR3722078.1275367/100‑1 (MQ=60)
                                                                                           |                                                                                           
TATCTACATACTGATACTGAAAATCATCGCGTTCATTGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAAGTAGGTTTAACC  >  NZ_CP009273/886098‑886280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: