Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F2 I199 R1
|
220 |
57.5 |
3163680 |
97.0% |
3068769 |
86.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
3,934,995 |
+C |
intergenic (‑308/‑173) |
yieP ← / → BW25113_RS19520 |
FadR/GntR family transcriptional regulator/16S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 3,934,991 | 1 | . | C | 93.2%
| 123.2
/ 3.3
| 44 | intergenic (‑304/‑177) | yieP/BW25113_RS19520 | FadR/GntR family transcriptional regulator/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base C (24/17); total (24/20) |
| Fisher's exact test for biased strand distribution p-value = 8.61e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
AGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT > NZ_CP009273/3934912‑3935079
|
aGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGcgcc > 1:1438301/1‑90 (MQ=255)
gTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTgag > 1:1175514/1‑90 (MQ=255)
aCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGTGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAaaagcaaagc > 1:263560/1‑90 (MQ=11)
aCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAaaagcaaagc < 1:513220/90‑1 (MQ=255)
aCTCCGGCAGAGAAAGCAAAAATAAATGCNTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGACAAaaagcaaagc < 2:546192/90‑1 (MQ=14)
cTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCg > 2:362498/1‑90 (MQ=255)
cTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCg > 1:769/1‑90 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGc > 2:1116623/1‑90 (MQ=255)
ggCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACt < 1:1519299/90‑1 (MQ=39)
agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGc < 1:1083780/90‑1 (MQ=255)
gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGctct > 1:742302/1‑90 (MQ=255)
aaGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCttt > 1:1117749/1‑90 (MQ=255)
aaGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCttt > 1:622408/1‑90 (MQ=255)
gCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTaa > 1:229772/1‑90 (MQ=255)
aaaaTAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACaa < 2:1405707/90‑1 (MQ=255)
aaaaTAAATGCTAGACTCTGTAGCGGGAAATGGTATTATGC‑A‑CACCCCCGTGCCGCTGAGAAAAAGCAAAGCGGCGCTGCTCTTTAACaa < 2:804465/90‑1 (MQ=11)
aatGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATc < 1:407886/90‑1 (MQ=255)
aatGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATc < 1:1314090/90‑1 (MQ=255)
tGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg < 1:1229032/90‑1 (MQ=255)
tGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg < 2:224869/90‑1 (MQ=255)
ttGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACa > 2:537319/1‑90 (MQ=255)
tGACTCTGTAGCGGGAAAGGGTATTATGC‑ACCC‑CCCCGCGCCGCCGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACaa < 2:1320846/90‑1 (MQ=14)
tGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACaa > 1:599780/1‑90 (MQ=255)
ctGTAGCGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCtgt > 2:115736/1‑90 (MQ=255)
cGGGAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGc < 2:1422293/90‑1 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg > 1:138793/1‑74 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg < 2:138793/74‑1 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc < 2:1213696/80‑1 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc > 1:1213696/1‑80 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 2:1419379/1‑90 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 2:802260/1‑90 (MQ=255)
gggAAAGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGCGTGGGCa > 1:839649/1‑90 (MQ=11)
aaaGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 1:931688/1‑90 (MQ=255)
aaaGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 1:1315625/1‑90 (MQ=255)
aaaGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 2:1558873/1‑90 (MQ=255)
aaaGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 1:654303/1‑90 (MQ=255)
aaaGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 2:357853/1‑90 (MQ=255)
aaaGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc < 1:537319/90‑1 (MQ=255)
aGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGaaaaa < 2:292856/36‑1 (MQ=11)
aGCGTATTATGC‑A‑CACCCCCGCGCCGCTGAGaaaaa > 1:292856/1‑36 (MQ=11)
gCGTATTATGCAA‑CC‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGac < 1:293550/90‑2 (MQ=11)
tatGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACg < 1:1419379/90‑1 (MQ=255)
tGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGa < 1:237035/90‑1 (MQ=255)
tGC‑A‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGa < 2:1035197/90‑1 (MQ=255)
ca‑cCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCGTTAACAATTTATCAGACAATCTATGTGGGCACTCGAAGATACGGATTCtt > 2:1421758/1‑90 (MQ=255)
|
AGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑A‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT > NZ_CP009273/3934912‑3935079
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > NZ_CP009273/3934902‑3935090
|
CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCC > SRR3722078.1461710/1‑100 (MQ=7)
GGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAG > SRR3722078.1193838/1‑100 (MQ=7)
TCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGTGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGC > SRR3722078.266777/1‑100 (MQ=23)
CTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCG > SRR3722078.776/1‑100 (MQ=24)
tccacgaccgccatcgtcggcagcgtcagatgtgtataagagacagGCGGGAAAGCGTATTATGC‑ACA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCAC < SRR3722078.999417/54‑1 (MQ=34)
nnnnnnnnnnnnnnnnnnnnAATAAATGCTTGACTATGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGAAAAGCGGCACTGCTC < SRR3722078.1517910/80‑1 (MQ=23)
ACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTC < SRR3722078.519295/100‑1 (MQ=24)
CTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCT > SRR3722078.751693/1‑100 (MQ=24)
CCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTT > SRR3722078.1134816/1‑100 (MQ=24)
CCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTT > SRR3722078.629580/1‑100 (MQ=24)
GGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAA > SRR3722078.232558/1‑100 (MQ=24)
GGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAAC < SRR3722078.1544074/100‑1 (MQ=26)
AGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAA < SRR3722078.1100182/100‑1 (MQ=24)
AATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAA > SRR3722078.606720/1‑100 (MQ=24)
AATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTG < SRR3722078.412821/100‑1 (MQ=24)
AATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTG < SRR3722078.1335084/100‑1 (MQ=24)
tcgtcggcagcgtcagatgtgtataagagacaggcacacCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTG < SRR3722078.1402986/61‑1 (MQ=10)
TGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTG < SRR3722078.1248394/100‑1 (MQ=24)
ACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGctgtct > SRR3722078.140406/1‑94 (MQ=25)
ACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCA > SRR3722078.1232775/1‑100 (MQ=24)
ACTCTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGCGTGGGCA > SRR3722078.850834/1‑100 (MQ=23)
CTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTC > SRR3722078.944540/1‑100 (MQ=24)
CTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTC > SRR3722078.1336650/1‑100 (MQ=24)
CTGTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTC > SRR3722078.661800/1‑100 (MQ=24)
GTAGCGGGAAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCctgtctcttatacacatctgacgctgccgacgatggcggtcgtg > SRR3722078.296425/1‑56 (MQ=30)
ataagagacagATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAT < SRR3722078.1017135/89‑1 (MQ=7)
AAAGCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGG < SRR3722078.543670/100‑1 (MQ=19)
GCGTATTATGCAACC‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGACGATACGGATT < SRR3722078.297126/100‑1 (MQ=5)
GCGTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATT > SRR3722078.85585/1‑100 (MQ=6)
GTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGnnnnnnnnnnnnnnnnnnnnn > SRR3722078.160201/1‑79 (MQ=7)
GTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCT > SRR3722078.654753/1‑100 (MQ=6)
GTATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCT > SRR3722078.1337013/1‑100 (MQ=6)
ATTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTA > SRR3722078.580972/1‑100 (MQ=6)
TTATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAA > SRR3722078.644735/1‑100 (MQ=6)
TATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAAC < SRR3722078.1442425/100‑1 (MQ=6)
ATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACctgtctcttatacacatctgacgctgccgacgatggc > SRR3722078.685837/1‑63 (MQ=8)
ATGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACG > SRR3722078.1316023/1‑100 (MQ=6)
TGC‑ACACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGT < SRR3722078.239924/100‑1 (MQ=6)
TGC‑ACA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC > SRR3722078.45572/1‑100 (MQ=7)
C‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > SRR3722078.1426774/1‑100 (MQ=7)
C‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > SRR3722078.1452765/1‑100 (MQ=7)
|
CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGC‑ACA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > NZ_CP009273/3934902‑3935090
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
