Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,799,157 G→T 34.0% pseudogene (1383/1476 nt) arpB → pseudogene, ankyrin repeats

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,799,1570GT34.0% 426.3 / 224.1 246pseudogene (1383/1476 nt)arpBpseudogene, ankyrin repeats
Reads supporting (aligned to +/- strand):  ref base G (74/88);  new base T (49/35);  total (123/123)
Fisher's exact test for biased strand distribution p-value = 8.02e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01

Only 100 of 247 total aligned reads displayed.

AAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATAAAACGCAG  >  CP009273/1799008‑1799305
                                                                                                                                                     |                                                                                                                                                    
aaGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAg                                                                                                                                                      >  1:4005551/1‑150 (MQ=255)
 aGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGc                                                                                                                                                     >  1:2870546/1‑150 (MQ=255)
 aGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGc                                                                                                                                                     >  1:1385171/1‑150 (MQ=255)
     tAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATta                                                                                                                                                 >  2:1744590/1‑150 (MQ=255)
        tGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATaa                                                                                                                                              <  2:1364970/150‑1 (MQ=255)
           aGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAAc                                                                                                                                           <  2:758742/150‑1 (MQ=255)
              cgtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGt                                                                                                                                        >  2:1649104/1‑150 (MQ=255)
               gtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTa                                                                                                                                       >  1:2479933/1‑150 (MQ=255)
                 cgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGa                                                                                                                                     >  1:3923648/1‑150 (MQ=255)
                   tgtTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGaaa                                                                                                                                   >  1:3812052/1‑150 (MQ=255)
                   tgtTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGaaa                                                                                                                                   >  1:3812341/1‑150 (MQ=255)
                         cTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACAtatt                                                                                                                             <  2:1416827/150‑1 (MQ=255)
                          ttATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACAtatta                                                                                                                            <  2:2269538/150‑1 (MQ=255)
                           tatataTCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACAtattat                                                                                                                           >  1:3705930/1‑150 (MQ=255)
                           tatataTCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACAtattat                                                                                                                           <  2:1745161/150‑1 (MQ=255)
                            atatatCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTAtg                                                                                                                          <  1:3404589/150‑1 (MQ=255)
                              atatCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTAtgct                                                                                                                        <  2:1092332/150‑1 (MQ=255)
                               tatCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTAtgctg                                                                                                                       >  1:463033/1‑150 (MQ=255)
                               tatCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTAtgctg                                                                                                                       <  1:3815634/150‑1 (MQ=255)
                                  cGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATAAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTAATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTa                                                                                                                    >  1:2361141/1‑150 (MQ=255)
                                   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTAt                                                                                                                   <  1:874609/150‑1 (MQ=255)
                                   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTAt                                                                                                                   >  1:1630297/1‑150 (MQ=255)
                                   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTAt                                                                                                                   >  1:1630260/1‑150 (MQ=255)
                                        tGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATg                                                                                                              <  1:1209189/150‑1 (MQ=255)
                                         gggTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGc                                                                                                             <  1:2239526/150‑1 (MQ=255)
                                               ttttGCAAAAAAACAATCTTTAAGTCAAAATCATTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATACATAATAATCATTATAAAACTGAAGAAACATATTATGCTGCTATTAATTCACTCAg                                                                                                       >  2:3495532/1‑150 (MQ=255)
                                                  tGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCa                                                                                                    <  2:2981273/150‑1 (MQ=255)
                                                     aaaaaaaCATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAg                                                                                                 >  2:858305/1‑150 (MQ=255)
                                                      aaaaaaCATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGc                                                                                                <  1:664780/150‑1 (MQ=255)
                                                      aaaaaaCATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGc                                                                                                >  1:4596432/1‑150 (MQ=255)
                                                        aaaaCATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCt                                                                                              <  2:1986993/150‑1 (MQ=255)
                                                        aaaaCATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCt                                                                                              <  2:3218810/150‑1 (MQ=255)
                                                         aaaCATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTg                                                                                             >  1:282320/1‑150 (MQ=255)
                                                                cTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTa                                                                                      >  2:4323657/1‑150 (MQ=255)
                                                                 ttttAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAg                                                                                     >  2:4058864/1‑150 (MQ=255)
                                                                 ttttAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAg                                                                                     >  2:2731966/1‑150 (MQ=255)
                                                                  tttAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGt                                                                                    <  1:3660489/150‑1 (MQ=255)
                                                                   ttAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTg                                                                                   >  1:2537060/1‑150 (MQ=255)
                                                                     aGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCt                                                                                 <  1:1205808/150‑1 (MQ=255)
                                                                     aGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCt                                                                                 >  2:3839166/1‑150 (MQ=255)
                                                                      gTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCtg                                                                                <  1:1990663/150‑1 (MQ=255)
                                                                      gTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGAAAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATTCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCtg                                                                                <  1:195491/150‑1 (MQ=255)
                                                                        cAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCtgat                                                                              >  2:1579416/1‑150 (MQ=255)
                                                                         aaCATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCtgatg                                                                             >  2:2241197/1‑150 (MQ=255)
                                                                         aaCATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCtgatg                                                                             <  2:222460/150‑1 (MQ=255)
                                                                          aCATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCtgatga                                                                            >  2:1477758/1‑150 (MQ=255)
                                                                            aTCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGaaa                                                                          >  2:769556/1‑150 (MQ=255)
                                                                             tCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAAt                                                                         >  2:3466440/1‑150 (MQ=255)
                                                                             tCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAAt                                                                         >  2:1142163/1‑150 (MQ=255)
                                                                               aGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATaa                                                                       >  2:1542306/1‑150 (MQ=255)
                                                                               aGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATaa                                                                       <  2:1868707/150‑1 (MQ=255)
                                                                                gTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATaaa                                                                      <  2:3095234/150‑1 (MQ=255)
                                                                                gTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATaaa                                                                      >  1:1103767/1‑150 (MQ=255)
                                                                                gTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATaaa                                                                      <  2:4146766/150‑1 (MQ=255)
                                                                                 ttATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAg                                                                     >  1:2500842/1‑150 (MQ=255)
                                                                                  tATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGa                                                                    <  2:642888/150‑1 (MQ=255)
                                                                                      tACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTa                                                                >  1:1904221/1‑150 (MQ=255)
                                                                                        cacTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTAtt                                                              >  1:1740935/1‑150 (MQ=255)
                                                                                        cacTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTAtt                                                              <  1:3356129/150‑1 (MQ=255)
                                                                                         acTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTAttt                                                             <  2:1396393/150‑1 (MQ=255)
                                                                                          cTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTta                                                            <  2:2450096/150‑1 (MQ=255)
                                                                                            aTTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTtata                                                          >  2:1477360/1‑150 (MQ=255)
                                                                                            aTTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTtata                                                          >  1:2075659/1‑150 (MQ=255)
                                                                                             ttGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATaa                                                         >  1:1709461/1‑150 (MQ=255)
                                                                                              tGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAAc                                                        >  1:952084/1‑150 (MQ=255)
                                                                                              tGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAAc                                                        >  1:950564/1‑150 (MQ=255)
                                                                                              tGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAAc                                                        >  1:3127927/1‑150 (MQ=255)
                                                                                                   gCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCt                                                   <  2:1005391/150‑1 (MQ=255)
                                                                                                     tAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTAt                                                 <  1:2124689/150‑1 (MQ=255)
                                                                                                         aaTCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTAc                                             >  1:1131938/1‑150 (MQ=255)
                                                                                                          aTCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACg                                            <  1:1844191/150‑1 (MQ=255)
                                                                                                          aTCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACg                                            <  2:2862334/150‑1 (MQ=255)
                                                                                                              tGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGatat                                        <  1:1500617/150‑1 (MQ=255)
                                                                                                               gACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGatata                                       <  1:3948116/150‑1 (MQ=255)
                                                                                                                acaacaTGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGatatat                                      <  2:717256/150‑1 (MQ=255)
                                                                                                                acaacaTGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGatatat                                      <  2:2569323/150‑1 (MQ=255)
                                                                                                                   acctGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATc                                   <  2:3813497/147‑1 (MQ=255)
                                                                                                                    caTGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCg                                  <  1:1121376/150‑1 (MQ=255)
                                                                                                                    caTGTCAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCg                                  >  2:1202899/1‑150 (MQ=255)
                                                                                                                         cAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACa                             <  1:3940291/150‑1 (MQ=255)
                                                                                                                         cAGCTGTTCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACa                             <  1:4330598/150‑1 (MQ=255)
                                                                                                                              gTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAatt                        >  2:2389908/1‑150 (MQ=255)
                                                                                                                                tCATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAatttt                      >  2:4517838/1‑150 (MQ=255)
                                                                                                                                 cATATAGCCATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAatttta                     >  2:3367552/1‑150 (MQ=255)
                                                                                                                                   tataGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAattttatt                   >  1:2996369/1‑150 (MQ=255)
                                                                                                                                      aGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAttttt                >  1:990286/1‑150 (MQ=255)
                                                                                                                                       gCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAtttttt               <  1:683326/150‑1 (MQ=255)
                                                                                                                                       gCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAtttttt               <  1:683251/150‑1 (MQ=255)
                                                                                                                                        ccATTCATCATAATCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAttttttt              <  1:509255/150‑1 (MQ=255)
                                                                                                                                        ccATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAttttttt              <  2:4024945/150‑1 (MQ=255)
                                                                                                                                        ccATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAttttttt              <  2:4292913/150‑1 (MQ=255)
                                                                                                                                        ccATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTAttttttt              <  1:3475593/150‑1 (MQ=255)
                                                                                                                                         cATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTc             <  2:1570742/150‑1 (MQ=255)
                                                                                                                                          aTTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCa            <  2:3973399/150‑1 (MQ=255)
                                                                                                                                              atcatAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATaaa        >  2:1780579/1‑150 (MQ=255)
                                                                                                                                                catAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATCTATCGATACATAATTTTATTTTTTTCATAAAAc      >  2:2157928/1‑150 (MQ=255)
                                                                                                                                                catAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATAAAAc      >  2:2500602/1‑150 (MQ=255)
                                                                                                                                                 atAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATAAAACg     >  1:4444295/1‑150 (MQ=255)
                                                                                                                                                 atAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATAAAACg     >  1:3190923/1‑150 (MQ=255)
                                                                                                                                                    aGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATAAAACGCAg  <  2:3247215/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
AAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCTGCTATTAATGCAATCAGCCAAAGCCTGAGTTTTAGTGCTGATGAAATAAAGACGTATTTATAACCAGCTATTTACGATATATATCGATACATAATTTTATTTTTTTCATAAAACGCAG  >  CP009273/1799008‑1799305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A