Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,753,629 C→A 32.5% P429Q (CCA→CAA)  yfjI → CP4‑57 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,753,6290CA32.5% 453.2 / 221.5 252P429Q (CCA→CAA) yfjICP4‑57 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base C (93/77);  new base A (48/34);  total (141/111)
Fisher's exact test for biased strand distribution p-value = 5.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.27e-01

Only 100 of 259 total aligned reads displayed.

ATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTT  >  CP009273/2753481‑2753778
                                                                                                                                                    |                                                                                                                                                     
  tGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCaaa                                                                                                                                                    >  2:3428308/1‑150 (MQ=255)
       aaTACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCaaataaat                                                                                                                                               >  1:3425151/1‑150 (MQ=255)
         tACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAAttt                                                                                                                                             >  2:470049/1‑150 (MQ=255)
         tACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAAttt                                                                                                                                             <  2:3795706/150‑1 (MQ=255)
             tCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGaa                                                                                                                                         <  1:1534026/150‑1 (MQ=255)
               cGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAAt                                                                                                                                       >  1:169295/1‑150 (MQ=255)
                gCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATc                                                                                                                                      <  1:2344790/150‑1 (MQ=255)
                   tGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTg                                                                                                                                   <  2:3578553/150‑1 (MQ=255)
                    gTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGa                                                                                                                                  <  1:2542318/150‑1 (MQ=255)
                    gTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGa                                                                                                                                  >  1:793376/1‑150 (MQ=255)
                      tctcTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACa                                                                                                                                >  1:2164034/1‑150 (MQ=255)
                        tctAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAg                                                                                                                              >  1:541378/1‑150 (MQ=255)
                        tctAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAg                                                                                                                              <  1:3317352/150‑1 (MQ=255)
                         ctAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAgg                                                                                                                             >  2:2692242/1‑150 (MQ=255)
                            aaaaaGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCaa                                                                                                                          >  1:1915669/1‑150 (MQ=255)
                              aaaGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAAt                                                                                                                        >  2:1624002/1‑150 (MQ=255)
                              aaaGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAAt                                                                                                                        >  1:3370505/1‑150 (MQ=255)
                               aagaagAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATg                                                                                                                       <  2:4496811/150‑1 (MQ=255)
                                 gaagaGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGaa                                                                                                                     >  2:4271258/1‑150 (MQ=255)
                                  aagaGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGaat                                                                                                                    >  2:1023854/1‑150 (MQ=255)
                                   agagTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGaatt                                                                                                                   <  2:74185/150‑1 (MQ=255)
                                    gagTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGaatta                                                                                                                  >  1:581823/1‑150 (MQ=255)
                                    gagTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGaatta                                                                                                                  >  1:2724000/1‑150 (MQ=255)
                                        tttCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAattaatta                                                                                                              <  1:4130216/150‑1 (MQ=255)
                                        tttCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAattaatta                                                                                                              <  1:1713769/150‑1 (MQ=255)
                                         ttCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAg                                                                                                             <  2:1633760/150‑1 (MQ=255)
                                         agtgctAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAg                                                                                                             <  2:3265512/145‑1 (MQ=255)
                                           cTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGaattaataataa                                                                                                           >  2:3402572/1‑145 (MQ=255)
                                            tttAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAAt                                                                                                          <  1:4200901/150‑1 (MQ=255)
                                             ttAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATc                                                                                                         <  2:659103/150‑1 (MQ=255)
                                             ttAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATc                                                                                                         <  2:86978/150‑1 (MQ=255)
                                               aGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCtt                                                                                                       >  2:203236/1‑150 (MQ=255)
                                                  tGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAAt                                                                                                    >  1:3970457/1‑150 (MQ=255)
                                                  tGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAAt                                                                                                    >  2:719705/1‑150 (MQ=255)
                                                   gTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAAtt                                                                                                   >  1:2859355/1‑150 (MQ=255)
                                                   gTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAAtt                                                                                                   <  1:2376683/150‑1 (MQ=255)
                                                   gTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAAtt                                                                                                   >  1:3886971/1‑150 (MQ=255)
                                                     ttCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTc                                                                                                 <  2:932031/150‑1 (MQ=255)
                                                        aGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTcaca                                                                                              >  1:1002592/1‑150 (MQ=255)
                                                          aaGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCacaaa                                                                                            >  2:3328090/1‑150 (MQ=255)
                                                           aGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCacaaaa                                                                                           <  2:3941990/150‑1 (MQ=255)
                                                                 tGAGCTTTATTGTTGGATAAATGATTACTGCTCGAAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACATTTTGGGACTAAGAAATTTAGAAATCGTGTCCAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAat                                                                                     <  1:1939040/150‑1 (MQ=255)
                                                                     cTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATAttt                                                                                 >  1:472357/1‑150 (MQ=255)
                                                                      tttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTta                                                                                >  2:1406112/1‑150 (MQ=255)
                                                                      tttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTta                                                                                <  2:2552482/150‑1 (MQ=255)
                                                                      tttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTta                                                                                >  1:928761/1‑150 (MQ=255)
                                                                       ttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtat                                                                               >  2:128816/1‑150 (MQ=255)
                                                                        tATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtata                                                                              <  1:2440767/150‑1 (MQ=255)
                                                                         aTTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTatat                                                                             >  1:3129403/1‑150 (MQ=255)
                                                                            gttgGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCtt                                                                          <  2:750650/150‑1 (MQ=255)
                                                                              tgGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCa                                                                        >  2:596819/1‑150 (MQ=255)
                                                                              tgGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCa                                                                        >  1:293435/1‑150 (MQ=255)
                                                                                  tAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATCAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATggg                                                                    <  1:1436403/150‑1 (MQ=255)
                                                                                       gATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTaaa                                                               >  1:1634354/1‑150 (MQ=255)
                                                                                          tACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACa                                                            >  1:569648/1‑150 (MQ=255)
                                                                                           aCTGCACGNAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACaa                                                           >  1:3667795/1‑150 (MQ=255)
                                                                                           aCTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACaa                                                           >  2:2900123/1‑150 (MQ=255)
                                                                                             tGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACaaaa                                                         <  1:1796670/150‑1 (MQ=255)
                                                                                               cACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAaat                                                       <  2:1965867/150‑1 (MQ=255)
                                                                                                aCGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAaata                                                      >  1:3198106/1‑150 (MQ=255)
                                                                                                 cGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTATAATCTTAATTTCAAAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAaataa                                                     >  2:3339115/1‑150 (MQ=255)
                                                                                                 cGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAaataa                                                     <  2:4169322/150‑1 (MQ=255)
                                                                                                     aaaaTTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATaaa                                                 <  2:169295/150‑1 (MQ=255)
                                                                                                     aaaaTTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATaaa                                                 <  1:216583/150‑1 (MQ=255)
                                                                                                      aaaTTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAAc                                                <  2:4185497/150‑1 (MQ=255)
                                                                                                        aTTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACAt                                              <  2:3092619/150‑1 (MQ=255)
                                                                                                         ttttCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATa                                             >  1:445946/1‑150 (MQ=255)
                                                                                                         ttttCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATa                                             <  1:1870682/150‑1 (MQ=255)
                                                                                                          tttCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATaa                                            >  1:1202984/1‑150 (MQ=255)
                                                                                                           ttcttcCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAAc                                           >  1:4231436/1‑150 (MQ=255)
                                                                                                           ttcttcCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAAc                                           >  1:4590391/1‑150 (MQ=255)
                                                                                                             cttcCTGCATCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTc                                         <  1:1323696/150‑1 (MQ=255)
                                                                                                                  tGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATtgt                                    >  2:2359973/1‑150 (MQ=255)
                                                                                                                   gCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATtgtg                                   >  1:2654700/1‑150 (MQ=255)
                                                                                                                      tCAAGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGttt                                <  2:216793/150‑1 (MQ=255)
                                                                                                                        aaGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGttttt                              >  2:2922484/1‑150 (MQ=255)
                                                                                                                        aaGAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGttttt                              >  2:2296867/1‑150 (MQ=255)
                                                                                                                          gAAAAATATTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTg                            <  2:258662/150‑1 (MQ=255)
                                                                                                                            aaaaTATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGAt                          <  1:2830067/150‑1 (MQ=255)
                                                                                                                            aaaaTATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGAt                          <  1:1624175/150‑1 (MQ=255)
                                                                                                                             aaaTATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGAtt                         <  2:393154/150‑1 (MQ=255)
                                                                                                                              aaTATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGAttt                        >  2:2705218/1‑150 (MQ=255)
                                                                                                                               atatTATCTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGAtttt                       <  2:2136753/150‑1 (MQ=255)
                                                                                                                                tattatCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTa                      <  1:1136973/150‑1 (MQ=255)
                                                                                                                                tattatCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTa                      >  2:118389/1‑150 (MQ=255)
                                                                                                                                 attatCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTaa                     >  1:181327/1‑150 (MQ=255)
                                                                                                                                 attatCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTaa                     >  1:181259/1‑150 (MQ=255)
                                                                                                                                  ttatCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAAt                    <  2:2853489/150‑1 (MQ=255)
                                                                                                                                      cTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACa                >  2:3176193/1‑150 (MQ=255)
                                                                                                                                      cTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACa                <  1:98333/150‑1 (MQ=255)
                                                                                                                                      cTTACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACa                >  2:2508895/1‑150 (MQ=255)
                                                                                                                                       ttACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACaa               >  1:1304684/1‑150 (MQ=255)
                                                                                                                                       ttACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCAGTGTGTTTTTTGATTTTAATGACaa               >  1:2199916/1‑150 (MQ=255)
                                                                                                                                        tACAATTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAAt              >  2:4503376/1‑150 (MQ=255)
                                                                                                                                          cAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCt            >  2:1926342/1‑150 (MQ=255)
                                                                                                                                           aaTTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTa           >  1:3605526/1‑150 (MQ=255)
                                                                                                                                            aTTTGGGCAAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTaa          <  1:3623106/150‑1 (MQ=255)
                                                                                                                                                   ccAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACt   <  1:3482211/150‑1 (MQ=255)
                                                                                                                                                    cAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACtt  <  2:3970457/150‑1 (MQ=255)
                                                                                                                                                    cAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACtt  >  2:1564911/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
ATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTT  >  CP009273/2753481‑2753778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A