Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,756,683 G→T 16.5% L73I (CTC→ATC)  yfjK ← DEAD/H helicase‑like protein, CP4‑57 putative defective prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,756,6830GT16.5% 979.9 / 118.1 307L73I (CTC→ATC) yfjKDEAD/H helicase‑like protein, CP4‑57 putative defective prophage
Reads supporting (aligned to +/- strand):  ref base G (132/124);  new base T (27/24);  total (159/148)
Fisher's exact test for biased strand distribution p-value = 8.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 313 total aligned reads displayed.

TGCACTCAGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAACCGCAAACA  >  CP009273/2756534‑2756832
                                                                                                                                                     |                                                                                                                                                     
tGCACTCAGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTgag                                                                                                                                                       <  2:3523269/150‑1 (MQ=255)
 gCACTCAGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTgaga                                                                                                                                                      <  1:3004034/150‑1 (MQ=255)
  cACTCAGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGAt                                                                                                                                                     <  2:1493578/150‑1 (MQ=255)
   aCTCAGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATa                                                                                                                                                    <  2:2641664/150‑1 (MQ=255)
       aGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACggg                                                                                                                                                >  1:3156470/1‑150 (MQ=255)
         caccacGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGaa                                                                                                                                              >  1:1582603/1‑150 (MQ=255)
         caccacGTGTTGCCCAGTCTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGCGATACGGGaa                                                                                                                                              <  1:3740147/150‑1 (MQ=255)
          accacGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAAc                                                                                                                                             >  2:3014368/1‑150 (MQ=255)
          accacGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAAc                                                                                                                                             <  1:2131280/150‑1 (MQ=255)
          accacGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACACCTTTTTGAGATACGGGAAc                                                                                                                                             >  1:1385091/1‑150 (MQ=255)
              cGTTTTGACCAGACTTGAGCAGATCTAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTAATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAAc                                                                                                                                         <  1:1066628/150‑1 (MQ=255)
               gTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAAcc                                                                                                                                        <  2:4294880/150‑1 (MQ=255)
               gTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAAcc                                                                                                                                        <  2:886634/150‑1 (MQ=255)
               gTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAAcc                                                                                                                                        <  2:4030391/150‑1 (MQ=255)
               gTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAAcc                                                                                                                                        >  1:1823753/1‑150 (MQ=255)
                ttttGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCt                                                                                                                                       <  1:3554942/150‑1 (MQ=255)
                 tttGACCAGTCTTGAGCAGATCGAATTTGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCATTTTTGATATACGGGAACATACCTg                                                                                                                                      <  1:4552541/150‑1 (MQ=255)
                    gACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGAtt                                                                                                                                   >  1:3639776/1‑150 (MQ=255)
                     aCCAGACTTGAGCAGATCTAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGAttt                                                                                                                                  >  2:4090096/1‑150 (MQ=255)
                      ccAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGAtttt                                                                                                                                 >  2:618422/1‑150 (MQ=255)
                      ccAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGAtttt                                                                                                                                 <  1:2751117/150‑1 (MQ=255)
                      ccAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGAtttt                                                                                                                                 <  1:2990385/150‑1 (MQ=255)
                        aGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTtct                                                                                                                               >  2:3114953/1‑150 (MQ=255)
                        aGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTtct                                                                                                                               >  2:1386488/1‑150 (MQ=255)
                         gACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTtctc                                                                                                                              >  2:1944728/1‑150 (MQ=255)
                          aCTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCa                                                                                                                             <  2:2671427/150‑1 (MQ=255)
                          aCTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCa                                                                                                                             >  1:2538759/1‑150 (MQ=255)
                          aCTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCa                                                                                                                             <  2:522114/150‑1 (MQ=255)
                             tGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCa                                                                                                                          <  2:1851761/150‑1 (MQ=255)
                             tGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCa                                                                                                                          >  2:4169143/1‑150 (MQ=255)
                                gCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCatat                                                                                                                       <  2:651561/150‑1 (MQ=255)
                                  aGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATAttt                                                                                                                     >  2:4596118/1‑150 (MQ=255)
                                   gATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATCCGGGAACAAACCTGATTTTCTCACCATAtttt                                                                                                                    >  1:2313327/1‑150 (MQ=255)
                                      cGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCa                                                                                                                 <  1:4411251/150‑1 (MQ=255)
                                       gAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCaa                                                                                                                >  2:2047751/1‑150 (MQ=255)
                                       gAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCaa                                                                                                                >  2:1295615/1‑150 (MQ=255)
                                        aaTATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCaaa                                                                                                               >  1:153589/1‑150 (MQ=255)
                                           atGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAAtt                                                                                                            <  2:4384397/150‑1 (MQ=255)
                                             gtgGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATtgt                                                                                                          >  1:1657074/1‑150 (MQ=255)
                                                gAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTgtggt                                                                                                       >  2:3945710/1‑150 (MQ=255)
                                                  aCTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGgtgt                                                                                                     <  1:3401062/150‑1 (MQ=255)
                                                   cTGCATTGAGTGGAAAACATAACCATCCGAGACTGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGtgtg                                                                                                    <  2:2950063/150‑1 (MQ=255)
                                                   cTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGtgtg                                                                                                    >  2:2509369/1‑150 (MQ=255)
                                                    tGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGc                                                                                                   >  2:538179/1‑150 (MQ=255)
                                                     gCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCt                                                                                                  <  1:3030303/150‑1 (MQ=255)
                                                     gCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCt                                                                                                  >  2:436727/1‑150 (MQ=255)
                                                       aTTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCg                                                                                                >  1:477272/1‑150 (MQ=255)
                                                         tGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGa                                                                                              <  1:2010006/150‑1 (MQ=255)
                                                         tGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGa                                                                                              <  1:1495722/150‑1 (MQ=255)
                                                           aGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGaaa                                                                                            >  2:4036706/1‑150 (MQ=255)
                                                                aaaaCATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAATCCGc                                                                                       >  2:200423/1‑150 (MQ=255)
                                                                     aTAACCATCCGAGAATGGTGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTcgcg                                                                                  >  2:1019395/1‑150 (MQ=255)
                                                                       aaCCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTcgcgcg                                                                                >  1:3215531/1‑150 (MQ=255)
                                                                        aCCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGa                                                                               <  2:1727813/150‑1 (MQ=255)
                                                                         ccATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGaa                                                                              >  2:3711532/1‑150 (MQ=255)
                                                                          cATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAAt                                                                             >  1:1198229/1‑150 (MQ=255)
                                                                           aTCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATc                                                                            <  2:769342/150‑1 (MQ=255)
                                                                           aTCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATc                                                                            >  2:3810197/1‑150 (MQ=255)
                                                                            tCCGAGAATGGCGTCCGGTATAGCTCAAGAACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCg                                                                           >  2:410090/1‑150 (MQ=255)
                                                                             ccGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCga                                                                          >  2:258081/1‑150 (MQ=255)
                                                                              cGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCgag                                                                         >  1:2378496/1‑150 (MQ=255)
                                                                                   ctGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTc                                                                    <  2:2579138/149‑1 (MQ=255)
                                                                                    tGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCg                                                                   >  1:2195408/1‑150 (MQ=255)
                                                                                    tGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCg                                                                   >  2:3987609/1‑150 (MQ=255)
                                                                                           cGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATc                                                            >  2:3791432/1‑150 (MQ=255)
                                                                                           cGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATc                                                            <  2:2182295/150‑1 (MQ=255)
                                                                                           cGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGATCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATc                                                            <  2:1189785/150‑1 (MQ=255)
                                                                                           cGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATc                                                            <  2:2398869/150‑1 (MQ=255)
                                                                                             gTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCaa                                                          <  1:2726244/150‑1 (MQ=255)
                                                                                                   cTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAgtcccg                                                    >  1:924117/1‑150 (MQ=255)
                                                                                                     cAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAgtcccgtc                                                  >  2:4079371/1‑150 (MQ=255)
                                                                                                      aaGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAgtcccgtcc                                                 >  1:1017341/1‑150 (MQ=255)
                                                                                                      aaGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTGGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAgtcccgtcc                                                 >  1:4337015/1‑150 (MQ=255)
                                                                                                        gCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCa                                               <  1:699877/150‑1 (MQ=255)
                                                                                                        gCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCa                                               >  2:1787901/1‑150 (MQ=255)
                                                                                                        gCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCa                                               >  2:2236812/1‑150 (MQ=255)
                                                                                                          aCCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAg                                             <  1:1255718/150‑1 (MQ=255)
                                                                                                            ccTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTc                                           <  1:1885092/150‑1 (MQ=255)
                                                                                                            ccTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTc                                           >  2:333432/1‑150 (MQ=255)
                                                                                                            ccTCAGGTAATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTc                                           >  2:2127615/1‑150 (MQ=255)
                                                                                                            ccTCAGGTAATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTc                                           >  2:4457751/1‑150 (MQ=255)
                                                                                                                aGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATAc                                       <  2:2864718/150‑1 (MQ=255)
                                                                                                                 ggTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACg                                      <  2:2727802/150‑1 (MQ=255)
                                                                                                                    cATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGaaa                                   <  1:1702230/150‑1 (MQ=255)
                                                                                                                     aTCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAAc                                  <  1:4047847/150‑1 (MQ=255)
                                                                                                                         ggTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAggg                              <  1:1602957/150‑1 (MQ=255)
                                                                                                                           tgtCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGtt                            <  1:259426/150‑1 (MQ=255)
                                                                                                                           tgtCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGATCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGtt                            <  1:383133/150‑1 (MQ=255)
                                                                                                                              cAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGa                         >  2:1136338/1‑150 (MQ=255)
                                                                                                                               aGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGac                        <  1:1562575/150‑1 (MQ=255)
                                                                                                                                  cTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCGAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGacaac                     <  2:4014412/150‑1 (MQ=255)
                                                                                                                                          cTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGtt             >  2:144955/1‑150 (MQ=255)
                                                                                                                                             cTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAAc          >  2:1582139/1‑150 (MQ=255)
                                                                                                                                             cTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAAc          <  1:1944728/150‑1 (MQ=255)
                                                                                                                                             cTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAAc          >  2:2417437/1‑150 (MQ=255)
                                                                                                                                              tttttGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAAcc         <  1:523075/150‑1 (MQ=255)
                                                                                                                                                 ttGATATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAACCGCa      <  2:1053222/150‑1 (MQ=255)
                                                                                                                                                 ttGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAACCGCa      >  1:1103606/1‑150 (MQ=255)
                                                                                                                                                  tGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAACCGCaa     <  1:3129748/150‑1 (MQ=255)
                                                                                                                                                     gaTACGGGAACAAACCTGATCTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAACCGCAAACa  <  1:3905049/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGCACTCAGCACCACGTTTTGACCAGACTTGAGCAGATCGAATATGTGGAACTGCATTGAGTGGAAAACATAACCATCCGAGAATGGCGTCCGGTATAGCTCAAGCACCCTCAGGTCATCCGGTGTCAGGCTGGTGAACTCCTTTTTGAGATACGGGAACAAACCTGATTTTCTCACCATATTTTTCAAAATTGTGGTGTGCTCGGAAAACCGCTCGCGCGAATCGAGAGCTCGCACGATCAAGTCCCGTCCCAAGTCATACGAAACAGGGTTAGACAACAGCTTGTTAACCGCAAACA  >  CP009273/2756534‑2756832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A