Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,825,160 A→T 34.8% I163I (ATT→ATA)  norR ← anaerobic nitric oxide reductase DNA‑binding transcriptional activator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,825,1600AT34.8% 354.3 / inf 290I163I (ATT→ATA) norRanaerobic nitric oxide reductase DNA‑binding transcriptional activator
Reads supporting (aligned to +/- strand):  ref base A (102/87);  new base T (54/47);  total (156/134)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 295 total aligned reads displayed.

ATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAAC  >  CP009273/2825011‑2825309
                                                                                                                                                     |                                                                                                                                                     
aTCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCa                                                                                                                                                       >  1:663615/1‑150 (MQ=255)
  cAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAAt                                                                                                                                                     <  1:4436635/150‑1 (MQ=255)
   aGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATc                                                                                                                                                    >  1:2177411/1‑150 (MQ=255)
   aGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATc                                                                                                                                                    >  2:4417107/1‑150 (MQ=255)
   aGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATc                                                                                                                                                    <  2:1689783/150‑1 (MQ=255)
    ggACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCa                                                                                                                                                   <  1:2891661/150‑1 (MQ=255)
    ggACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCa                                                                                                                                                   >  2:2555847/1‑150 (MQ=255)
       cGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCa                                                                                                                                                <  1:3479345/150‑1 (MQ=255)
          tGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACg                                                                                                                                             >  1:4348496/1‑150 (MQ=255)
           gagaTCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAAcac                                                                                                                                            >  1:4627116/1‑148 (MQ=255)
           gagaTCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGc                                                                                                                                            >  1:1819494/1‑150 (MQ=255)
            agaTCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCa                                                                                                                                           >  2:3878192/1‑150 (MQ=255)
              aTCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCAtt                                                                                                                                         >  2:2580289/1‑150 (MQ=255)
               tCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTg                                                                                                                                        <  2:1495176/150‑1 (MQ=255)
                cGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGc                                                                                                                                       >  1:1512085/1‑150 (MQ=255)
                cGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGc                                                                                                                                       >  1:1060124/1‑150 (MQ=255)
                 ggACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGGTCAATCAGCAACGCCTTGCt                                                                                                                                      >  2:3904422/1‑150 (MQ=255)
                      gcgccACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACg                                                                                                                                 <  1:1334306/149‑1 (MQ=255)
                       cgccACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGc                                                                                                                                >  2:2365758/1‑150 (MQ=255)
                        gccACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCTTATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCt                                                                                                                               <  1:3473710/150‑1 (MQ=255)
                        gccACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCt                                                                                                                               >  2:2962127/1‑150 (MQ=255)
                         ccACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTc                                                                                                                              >  1:479230/1‑150 (MQ=255)
                          cacaATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTcc                                                                                                                             <  2:285794/150‑1 (MQ=255)
                          cacaATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTcc                                                                                                                             <  1:357787/150‑1 (MQ=255)
                          cacaATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTcc                                                                                                                             >  2:3822412/1‑150 (MQ=255)
                              atctcaatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCccgcc                                                                                                                         >  2:3458867/1‑150 (MQ=255)
                              atctcaatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCccgcc                                                                                                                         <  2:1734833/150‑1 (MQ=255)
                                 tcaatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCgccgcc                                                                                                                      >  2:4263720/1‑150 (MQ=255)
                                 tcaatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCgccgcc                                                                                                                      <  2:377572/150‑1 (MQ=255)
                                 tcaatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCgccgcc                                                                                                                      >  1:3785544/1‑150 (MQ=255)
                                  caatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCa                                                                                                                     <  1:11939/150‑1 (MQ=255)
                                  caatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCa                                                                                                                     >  1:2441257/1‑150 (MQ=255)
                                   aatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAg                                                                                                                    >  1:3006552/1‑150 (MQ=255)
                                   aatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAg                                                                                                                    >  1:422161/1‑150 (MQ=255)
                                   aatctcTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAg                                                                                                                    <  1:883990/150‑1 (MQ=255)
                                       tctTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCgca                                                                                                                >  2:4251631/1‑150 (MQ=255)
                                       tctTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCgca                                                                                                                >  1:4569471/1‑150 (MQ=255)
                                        ctTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCgcag                                                                                                               >  1:1613794/1‑150 (MQ=255)
                                        ctTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCgcag                                                                                                               >  1:792085/1‑150 (MQ=255)
                                         ttttttCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCgcagc                                                                                                              <  2:1935927/150‑1 (MQ=255)
                                            tttCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAAt                                                                                                           >  2:3768209/1‑150 (MQ=255)
                                            tttCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAAt                                                                                                           >  2:1389998/1‑150 (MQ=255)
                                             ttCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATc                                                                                                          >  2:193777/1‑150 (MQ=255)
                                                aGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGc                                                                                                       >  1:3459097/1‑150 (MQ=255)
                                                 gTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGcc                                                                                                      >  2:1111478/1‑150 (MQ=255)
                                                    gCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTa                                                                                                   >  2:432533/1‑150 (MQ=255)
                                                          tGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCtt                                                                                             <  2:127315/150‑1 (MQ=255)
                                                          tGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCtt                                                                                             <  2:1292604/150‑1 (MQ=255)
                                                           gCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTtc                                                                                            <  1:2958548/150‑1 (MQ=255)
                                                             cAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTtcgt                                                                                          <  2:2778280/150‑1 (MQ=255)
                                                              aGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTtcgtc                                                                                         >  1:963194/1‑150 (MQ=255)
                                                               ggggACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTtcgtcg                                                                                        >  1:2539198/1‑150 (MQ=255)
                                                                 ggACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCt                                                                                      <  2:3083718/150‑1 (MQ=255)
                                                                 ggACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCt                                                                                      >  1:1723684/1‑150 (MQ=255)
                                                                 ggACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCt                                                                                      <  2:3933853/150‑1 (MQ=255)
                                                                    cAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGaa                                                                                   >  1:2581383/1‑150 (MQ=255)
                                                                      aGCCAATCATCTGCGTCTGTTTCACCGCTTCACACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGaaaa                                                                                 <  2:3911514/150‑1 (MQ=255)
                                                                      aGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGaaaa                                                                                 >  2:4457672/1‑150 (MQ=255)
                                                                        ccAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACa                                                                               <  1:4523760/150‑1 (MQ=255)
                                                                         cAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGACAACAt                                                                              >  2:512144/1‑150 (MQ=255)
                                                                          aaTCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAATATc                                                                             >  2:1407200/1‑150 (MQ=255)
                                                                          aaTCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATc                                                                             >  2:2014297/1‑150 (MQ=255)
                                                                               tcTGCGTCTGTTTCACCACTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACt                                                                        <  1:3879174/150‑1 (MQ=255)
                                                                                   cGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATc                                                                    <  2:3948095/150‑1 (MQ=255)
                                                                                   cGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATc                                                                    >  2:442048/1‑150 (MQ=255)
                                                                                   cGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATc                                                                    <  1:2365758/150‑1 (MQ=255)
                                                                                     tCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCgg                                                                  <  2:4569471/150‑1 (MQ=255)
                                                                                           tCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCa                                                            <  2:514946/150‑1 (MQ=255)
                                                                                           tCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCa                                                            >  1:3184384/1‑150 (MQ=255)
                                                                                           tCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCa                                                            <  2:2929127/150‑1 (MQ=255)
                                                                                            cACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCAt                                                           >  1:1259442/1‑150 (MQ=255)
                                                                                                  ttCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTc                                                     <  1:1893562/150‑1 (MQ=255)
                                                                                                    cAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGa                                                   >  2:103410/1‑150 (MQ=255)
                                                                                                      aaCGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGc                                                 >  2:1680468/1‑150 (MQ=255)
                                                                                                         ggCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTc                                              >  2:2651206/1‑150 (MQ=255)
                                                                                                             tGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTg                                          >  2:122051/1‑150 (MQ=255)
                                                                                                              ggCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTgc                                         <  1:3071326/150‑1 (MQ=255)
                                                                                                               gCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTgcg                                        >  2:1564707/1‑150 (MQ=255)
                                                                                                                cATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTgcgc                                       >  1:2303406/1‑150 (MQ=255)
                                                                                                                 aTCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACTCATTGCTAAACCCTCCCGCCGCCAGCGCAGCAATAAGCAGTAGCTCTTCGTCGCTTAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGcc                                      >  1:2635504/1‑150 (MQ=255)
                                                                                                                 aTCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGcc                                      <  2:690852/150‑1 (MQ=255)
                                                                                                                   cGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGa                                    >  1:2222034/1‑150 (MQ=255)
                                                                                                                     ccTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATc                                  >  2:3643746/1‑150 (MQ=255)
                                                                                                                      cTGGCAGCATATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCa                                 <  1:1024961/150‑1 (MQ=255)
                                                                                                                        ggCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAgg                               <  1:5244/150‑1 (MQ=255)
                                                                                                                        ggCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAgg                               >  1:2803158/1‑150 (MQ=255)
                                                                                                                          cagcaTATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGtt                             >  1:3116374/1‑150 (MQ=255)
                                                                                                                          cagcaTATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGtt                             >  1:3724043/1‑150 (MQ=255)
                                                                                                                          cagcaTATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGtt                             <  1:268146/150‑1 (MQ=255)
                                                                                                                           agcaTATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGttt                            >  1:1999963/1‑150 (MQ=255)
                                                                                                                            gcaTATTCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGtttt                           >  1:1671007/1‑150 (MQ=255)
                                                                                                                                 ttCTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCg                      <  1:4048288/150‑1 (MQ=255)
                                                                                                                                 tgcTGGCTTTCCAGTTGTTCTATCAGCAACGCATTGCTGAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCg                      <  2:3211070/148‑1 (MQ=255)
                                                                                                                                        tttCCAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACa               >  1:3338595/1‑150 (MQ=255)
                                                                                                                                           ccAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATg            <  2:1819494/150‑1 (MQ=255)
                                                                                                                                            cAGTTGTTCTATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATgg           >  1:575176/1‑150 (MQ=255)
                                                                                                                                             aGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGc          >  2:1339990/1‑150 (MQ=255)
                                                                                                                                             aGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGc          >  2:585420/1‑150 (MQ=255)
                                                                                                                                                  ttCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGAcc     >  2:4184159/1‑150 (MQ=255)
                                                                                                                                                    cAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCaa   >  2:2444730/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAAC  >  CP009273/2825011‑2825309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A