Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,151,225 A→T 36.2% N73Y (AAT→TAT)  yqhG → DUF3828 family putative periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,151,2250AT36.2% 313.5 / inf 281N73Y (AAT→TAT) yqhGDUF3828 family putative periplasmic protein
Reads supporting (aligned to +/- strand):  ref base A (87/92);  new base T (42/59);  total (130/151)
Fisher's exact test for biased strand distribution p-value = 2.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01

Only 100 of 284 total aligned reads displayed.

AGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAGATGATAAAGAAAAGA  >  CP009273/3151076‑3151372
                                                                                                                                                     |                                                                                                                                                   
   ccGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCtata                                                                                                                                                  <  2:1092735/150‑1 (MQ=255)
   ccGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAata                                                                                                                                                  >  2:2707287/1‑150 (MQ=255)
    cGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCAGCCGGGCGatat                                                                                                                                                 >  1:4058234/1‑150 (MQ=255)
     gTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATAtt                                                                                                                                                <  2:3209003/150‑1 (MQ=255)
       aGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATtgg                                                                                                                                              <  1:1378799/150‑1 (MQ=255)
       aGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATtgg                                                                                                                                              <  1:981171/150‑1 (MQ=255)
        gAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATtggc                                                                                                                                             <  1:1418723/150‑1 (MQ=255)
         aacaaacaGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATtggct                                                                                                                                            <  1:346801/150‑1 (MQ=255)
         aacaaacaGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATtggct                                                                                                                                            >  1:816908/1‑150 (MQ=255)
          acaaacaGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATtggctg                                                                                                                                           >  2:2225917/1‑150 (MQ=255)
             aacaGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTggctggct                                                                                                                                        <  1:1060427/150‑1 (MQ=255)
             aacaGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTggctggct                                                                                                                                        <  1:1691917/150‑1 (MQ=255)
                aGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGACAATATTGGCTGGCTGGa                                                                                                                                     >  1:679599/1‑150 (MQ=255)
                       cATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGAt                                                                                                                              >  1:856398/1‑150 (MQ=255)
                         tatTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATcc                                                                                                                            >  2:3105416/1‑150 (MQ=255)
                           tttATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCgg                                                                                                                          <  2:696813/150‑1 (MQ=255)
                                cAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTtgt                                                                                                                     >  2:913675/1‑150 (MQ=255)
                                 aGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTtgtg                                                                                                                    <  2:2810281/150‑1 (MQ=255)
                                   aaCTATAAATCAGATGCCACTGCCCCTTCTTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGAt                                                                                                                  <  2:380929/150‑1 (MQ=255)
                                   aaCTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGAt                                                                                                                  <  1:4569884/150‑1 (MQ=255)
                                     cTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTg                                                                                                                >  2:1558693/1‑150 (MQ=255)
                                       ataAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGACTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTc                                                                                                              <  2:4029802/150‑1 (MQ=255)
                                         aaaTCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAg                                                                                                            <  1:205729/150‑1 (MQ=255)
                                         aaaTCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAg                                                                                                            >  2:861347/1‑150 (MQ=255)
                                         aaaTCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAg                                                                                                            <  1:2941619/150‑1 (MQ=255)
                                          aaTCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAgg                                                                                                           <  2:2142326/150‑1 (MQ=255)
                                              aGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGAttt                                                                                                       <  2:301856/150‑1 (MQ=255)
                                              aGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCCGAACGACAATCTTACGCTGCCGGGCAATATTGGCGGGCTGGATTATGATCCGGTTTGTGATTGTCAGGAttt                                                                                                       <  2:3733547/150‑1 (MQ=255)
                                               gATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGAtttt                                                                                                      >  2:4538610/1‑150 (MQ=255)
                                                aTGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTg                                                                                                     >  1:3477988/1‑150 (MQ=255)
                                                aTGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTg                                                                                                     >  1:2073898/1‑150 (MQ=255)
                                                 tGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTgg                                                                                                    >  2:663388/1‑150 (MQ=255)
                                                   ccACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCg                                                                                                  <  1:1475394/150‑1 (MQ=255)
                                                    cACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGa                                                                                                 >  1:1227133/1‑150 (MQ=255)
                                                      cTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATc                                                                                               <  1:3262986/150‑1 (MQ=255)
                                                       tGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCt                                                                                              <  2:465648/150‑1 (MQ=255)
                                                          cccTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGt                                                                                           >  2:3380240/1‑150 (MQ=255)
                                                          cccTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGACTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGt                                                                                           <  2:4407985/150‑1 (MQ=255)
                                                          cccTTATTTTGGTGAAACCGGAGAGCGGGCGAGAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGACTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGt                                                                                           <  2:51881/150‑1 (MQ=255)
                                                           ccTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTg                                                                                          >  1:3953912/1‑150 (MQ=255)
                                                            cTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGc                                                                                         >  1:1130046/1‑150 (MQ=255)
                                                            cTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGc                                                                                         >  1:563160/1‑150 (MQ=255)
                                                             ttATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCt                                                                                        <  2:1504159/150‑1 (MQ=255)
                                                             ttATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCGTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCt                                                                                        <  1:1434796/150‑1 (MQ=255)
                                                              tATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTa                                                                                       <  1:751282/150‑1 (MQ=255)
                                                                ttttGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGa                                                                                     <  1:1355233/150‑1 (MQ=255)
                                                                  ttGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGaaa                                                                                   >  1:1617037/1‑150 (MQ=255)
                                                                        aaaCCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTg                                                                             <  1:4380215/150‑1 (MQ=255)
                                                                        aaaCCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTg                                                                             <  1:4156509/150‑1 (MQ=255)
                                                                        aaaCCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTg                                                                             <  2:1703938/150‑1 (MQ=255)
                                                                            cGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGAt                                                                         >  1:2538665/1‑150 (MQ=255)
                                                                            cGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGAt                                                                         >  1:1897974/1‑150 (MQ=255)
                                                                                gagCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAAcc                                                                     <  2:2429773/150‑1 (MQ=255)
                                                                                gagCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAAcc                                                                     >  1:4092897/1‑150 (MQ=255)
                                                                                   cGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCaa                                                                  >  1:4305133/1‑150 (MQ=255)
                                                                                         aTAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGAc                                                            <  1:3621616/150‑1 (MQ=255)
                                                                                            aCTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGcc                                                         >  1:474133/1‑150 (MQ=255)
                                                                                            aCTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGcc                                                         >  1:4114175/1‑150 (MQ=255)
                                                                                            aCTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGcc                                                         <  2:3553785/150‑1 (MQ=255)
                                                                                             cTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCg                                                        >  1:4470923/1‑150 (MQ=255)
                                                                                             cTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCg                                                        <  2:2535496/150‑1 (MQ=255)
                                                                                             cTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCg                                                        >  2:2549523/1‑150 (MQ=255)
                                                                                                cTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATc                                                     <  1:3451901/150‑1 (MQ=255)
                                                                                                  gcgcGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCat                                                   >  2:1257616/1‑150 (MQ=255)
                                                                                                  gcgcGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCat                                                   <  2:4528871/150‑1 (MQ=255)
                                                                                                        aTTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCatgccgat                                             <  1:2079116/150‑1 (MQ=255)
                                                                                                             aCAGGCGCTTACCCTGAACGACAATCTTCCGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGt                                        <  2:1137824/150‑1 (MQ=255)
                                                                                                               aGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTtg                                      <  2:278320/150‑1 (MQ=255)
                                                                                                                ggCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTtgt                                     <  1:3663548/150‑1 (MQ=255)
                                                                                                                  cgcTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTgc                                   <  2:4531003/150‑1 (MQ=255)
                                                                                                                  cgcTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTgc                                   <  2:769066/150‑1 (MQ=255)
                                                                                                                  cgcTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTgc                                   >  2:3380799/1‑150 (MQ=255)
                                                                                                                  cgcTTACCCTGAACGACAATCTTACGCTGCCGGACAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTgc                                   <  2:4108819/150‑1 (MQ=255)
                                                                                                                  cgcTTACCCTGAACGACAATCATACGCTGCCGGTCACTAATGTCTGGCTGGATTATGATCCGGATTGTGATTGTCAGGATTTTGTCGATCTGGTGCTAGAAAGCGATGCGATAACACAAACTGACGCAGATCATGCCGATGCAGTTGTgc                                   >  1:1947041/1‑150 (MQ=255)
                                                                                                                   gcTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTgcg                                  <  1:1977191/150‑1 (MQ=255)
                                                                                                                    cTTACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTgcgc                                 >  2:3688351/1‑150 (MQ=255)
                                                                                                                     ttACCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCt                                <  2:847760/150‑1 (MQ=255)
                                                                                                                     ttACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCt                                >  2:4325828/1‑150 (MQ=255)
                                                                                                                      tACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCtt                               <  1:2807147/150‑1 (MQ=255)
                                                                                                                      tACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCtt                               <  1:1011023/150‑1 (MQ=255)
                                                                                                                       aCCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCttt                              >  1:2358956/1‑150 (MQ=255)
                                                                                                                       aCCCTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCttt                              <  2:2911991/150‑1 (MQ=255)
                                                                                                                       aCCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCttt                              >  2:1867530/1‑150 (MQ=255)
                                                                                                                        cccTGAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTc                             <  1:1311076/150‑1 (MQ=255)
                                                                                                                        cccTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTc                             <  2:3838097/150‑1 (MQ=255)
                                                                                                                        cccTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTc                             >  1:2721989/1‑150 (MQ=255)
                                                                                                                         ccTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCg                            >  1:2017179/1‑150 (MQ=255)
                                                                                                                            gAACGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTAt                         >  1:3158238/1‑150 (MQ=255)
                                                                                                                              aCGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCt                       <  2:604887/150‑1 (MQ=255)
                                                                                                                              aCGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCt                       <  2:3909579/150‑1 (MQ=255)
                                                                                                                               cGACAATCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCtt                      <  1:642377/150‑1 (MQ=255)
                                                                                                                               cGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCtt                      <  1:143952/150‑1 (MQ=255)
                                                                                                                                   aaTCTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTaaa                  <  1:105680/150‑1 (MQ=255)
                                                                                                                                      cTTACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAgat               <  2:2013081/150‑1 (MQ=255)
                                                                                                                                      cTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAgat               <  2:724817/150‑1 (MQ=255)
                                                                                                                                       ttACGCTGCCGGGCTATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAgatg              >  2:1493211/1‑150 (MQ=255)
                                                                                                                                           gCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAGATGATaa          >  1:3890111/1‑150 (MQ=255)
                                                                                                                                             tGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAGATGATaaag        >  1:2837719/1‑150 (MQ=255)
                                                                                                                                                 gggCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAGATGATaaagaaaa    >  1:2444293/1‑150 (MQ=255)
                                                                                                                                                  ggCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAGATGATaaagaaaag   <  2:2087049/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
AGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGCGCGTATTCAACAGGCGCTTACCCTGAACGACAATCTTACGCTGCCGGGCAATATTGGCTGGCTGGATTATGATCCGGTTTGTGATTGTCAGGATTTTGGCGATCTGGTGCTAGAAAGCGTTGCGATAACCCAAACTGACGCCGATCATGCCGATGCCGTTGTGCGCTTTCGTATCTTTAAAGATGATAAAGAAAAGA  >  CP009273/3151076‑3151372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A