Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F86 I0 R1 593 297.4 9515568 94.4% 8982696 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,034,205 G→T 5.1% L75L (CTC→CTA)  sdhE ← flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,034,2050GT 5.1% 1212.2 / 30.8 314L75L (CTC→CTA) sdhEflavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair
Reads supporting (aligned to +/- strand):  ref base G (120/178);  new base T (13/3);  total (133/181)
Fisher's exact test for biased strand distribution p-value = 1.50e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 325 total aligned reads displayed.

TCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGAAAAACGG  >  CP009273/3034056‑3034354
                                                                                                                                                     |                                                                                                                                                     
tccatAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATg                                                                                                                                                       >  1:1013167/1‑150 (MQ=255)
  catAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACCGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAg                                                                                                                                                     <  2:4529543/150‑1 (MQ=255)
  catAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAg                                                                                                                                                     <  2:2904251/150‑1 (MQ=255)
   atAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGt                                                                                                                                                    >  1:3923790/1‑150 (MQ=255)
   atAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGAGTCTGGATGAGt                                                                                                                                                    >  1:2206741/1‑150 (MQ=255)
       cGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGa                                                                                                                                                <  1:4738442/150‑1 (MQ=255)
            tgtAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACcatc                                                                                                                                           <  2:2139330/150‑1 (MQ=255)
              tAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACcatcat                                                                                                                                         >  1:2569755/1‑150 (MQ=255)
              tAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACcatcat                                                                                                                                         >  1:922363/1‑150 (MQ=255)
              tAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACcatcat                                                                                                                                         >  1:205651/1‑150 (MQ=255)
               aaCTGAGTGGCCAGGGCATTAGTAAAATAACAGCGGCAACCAGCCCATGAATCCGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAAGCAGATTGCCACAGGACCCCGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCAtt                                                                                                                                        <  2:4458087/150‑1 (MQ=255)
                aCTGAGTGGCCCGGGCATGAGTAAAATACCCGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCAttt                                                                                                                                       <  1:1223228/150‑1 (MQ=255)
                aCTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCAttt                                                                                                                                       <  2:122765/150‑1 (MQ=255)
                 cTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTc                                                                                                                                      <  1:3851721/150‑1 (MQ=255)
                 cTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTc                                                                                                                                      >  2:762963/1‑150 (MQ=255)
                   gAGTGGCCAGGGCATGAGTAAAATACCAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCa                                                                                                                                    <  1:1838625/150‑1 (MQ=255)
                   gAGTGGCCAGGGCATGAGTAAAATACCAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCa                                                                                                                                    <  1:173584/150‑1 (MQ=255)
                   gAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCa                                                                                                                                    <  2:3623889/150‑1 (MQ=255)
                    aGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAg                                                                                                                                   >  2:3454687/1‑150 (MQ=255)
                        gCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCt                                                                                                                               <  1:2323565/150‑1 (MQ=255)
                         ccAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTg                                                                                                                              <  1:199049/150‑1 (MQ=255)
                          cAGGGCATGATTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGc                                                                                                                             <  1:883460/150‑1 (MQ=255)
                                aTGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGc                                                                                                                       >  2:3983774/1‑150 (MQ=255)
                                 tGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGcc                                                                                                                      <  2:2282217/150‑1 (MQ=255)
                                     tAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACGGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGtt                                                                                                                  <  2:1897692/150‑1 (MQ=255)
                                      aaaaTAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGttt                                                                                                                 <  1:3667322/150‑1 (MQ=255)
                                       aaaTAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTa                                                                                                                >  1:2249876/1‑150 (MQ=255)
                                        aaTAACAGCGGCAACCAGCCCATGAATCCGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTAc                                                                                                               <  1:1996128/150‑1 (MQ=255)
                                             ccgCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGa                                                                                                          <  1:2801244/148‑1 (MQ=255)
                                              aGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGAt                                                                                                         >  2:2312673/1‑150 (MQ=255)
                                              aGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGAt                                                                                                         <  2:1298436/150‑1 (MQ=255)
                                                    aaCCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATTAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATtcatca                                                                                                   >  2:3762257/1‑150 (MQ=255)
                                                        aGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCTGCCGGTTTACCGAGATTCATCAGCCa                                                                                               >  1:3230878/1‑150 (MQ=255)
                                                        aGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa                                                                                               <  2:1757622/150‑1 (MQ=255)
                                                         gCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAg                                                                                              <  2:3656577/150‑1 (MQ=255)
                                                         gCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAg                                                                                              <  1:1416100/150‑1 (MQ=255)
                                                            cATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTa                                                                                           <  1:316404/150‑1 (MQ=255)
                                                               gAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAAc                                                                                        <  1:2464806/150‑1 (MQ=255)
                                                                aaTCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACa                                                                                       >  2:3459499/1‑150 (MQ=255)
                                                                aaTCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACa                                                                                       <  2:2670860/150‑1 (MQ=255)
                                                                  tCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAgg                                                                                     <  2:1013878/150‑1 (MQ=255)
                                                                  tCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAgg                                                                                     <  2:908727/150‑1 (MQ=255)
                                                                   cAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGt                                                                                    >  2:791515/1‑150 (MQ=255)
                                                                   cAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGt                                                                                    <  2:752591/150‑1 (MQ=255)
                                                                     gCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTcc                                                                                  >  2:4368256/1‑150 (MQ=255)
                                                                     gCAAGGAAAGCCACTGTGAGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTcc                                                                                  <  1:698258/150‑1 (MQ=255)
                                                                      cAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATTAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCg                                                                                 >  2:2416000/1‑150 (MQ=255)
                                                                      cAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCg                                                                                 <  2:384633/150‑1 (MQ=255)
                                                                        aGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTCAACAGGTCCGGa                                                                               >  2:3578295/1‑150 (MQ=255)
                                                                         ggAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGAt                                                                              >  2:4656090/1‑150 (MQ=255)
                                                                          gAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATc                                                                             <  2:3023369/150‑1 (MQ=255)
                                                                             aGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTc                                                                          <  2:1941794/150‑1 (MQ=255)
                                                                             aGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTc                                                                          >  1:554553/1‑150 (MQ=255)
                                                                                   tgtgCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTc                                                                    <  2:4725793/150‑1 (MQ=255)
                                                                                   tgtgCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTc                                                                    <  2:3949034/150‑1 (MQ=255)
                                                                                   tgtgCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTc                                                                    >  2:1846123/1‑150 (MQ=255)
                                                                                       cgcgcCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCcagc                                                                >  1:4587651/1‑150 (MQ=255)
                                                                                          gcCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATTAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGa                                                             >  1:2512046/1‑150 (MQ=255)
                                                                                          gcCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGa                                                             <  1:1103038/150‑1 (MQ=255)
                                                                                            cAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACg                                                           <  1:1624981/150‑1 (MQ=255)
                                                                                            cAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACg                                                           <  1:635165/150‑1 (MQ=255)
                                                                                             aGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGa                                                          >  1:2980430/1‑150 (MQ=255)
                                                                                             aGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGa                                                          >  2:1111801/1‑150 (MQ=255)
                                                                                             aGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGa                                                          >  1:3827866/1‑150 (MQ=255)
                                                                                                   cgcgCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATTAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAg                                                    >  1:3361442/1‑150 (MQ=255)
                                                                                                   cgcgCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAg                                                    <  2:1696318/150‑1 (MQ=255)
                                                                                                     cgcAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGAt                                                  >  1:2992919/1‑150 (MQ=255)
                                                                                                         aaTCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGt                                              <  1:2283313/150‑1 (MQ=255)
                                                                                                           tCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGttt                                            >  2:3128234/1‑150 (MQ=255)
                                                                                                            cAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGtttt                                           >  1:4321883/1‑150 (MQ=255)
                                                                                                             aGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATTAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGttttt                                          <  2:4575234/150‑1 (MQ=255)
                                                                                                               aTTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCg                                        <  1:359978/150‑1 (MQ=255)
                                                                                                               aTTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCg                                        >  2:1173591/1‑150 (MQ=255)
                                                                                                                ttGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGt                                       >  2:3289443/1‑150 (MQ=255)
                                                                                                                   ccACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCAt                                    <  2:3064953/150‑1 (MQ=255)
                                                                                                                   ccACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCAt                                    >  1:686664/1‑150 (MQ=255)
                                                                                                                     acaGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCg                                  <  2:1403014/150‑1 (MQ=255)
                                                                                                                     acaGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGAACATCATTTCAAGTTCTGCATCGGCCTGTTTACCGTGATTCATCAGACAGTAAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTATTCAtag                                  >  1:3581372/1‑148 (MQ=255)
                                                                                                                          aCCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTaa                             >  1:1594435/1‑150 (MQ=255)
                                                                                                                            cACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGc                           <  1:2738813/150‑1 (MQ=255)
                                                                                                                             aCGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCt                          <  2:3039071/150‑1 (MQ=255)
                                                                                                                             aCGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCt                          >  1:3991447/1‑150 (MQ=255)
                                                                                                                                 tCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCg                      >  2:4320189/1‑150 (MQ=255)
                                                                                                                                 tCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCg                      >  1:4452087/1‑150 (MQ=255)
                                                                                                                                   ccGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTa                    <  1:4229825/150‑1 (MQ=255)
                                                                                                                                    cGGTTCCGTGTCTGGATTAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTAc                   >  1:2712944/1‑150 (MQ=255)
                                                                                                                                    cGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTAc                   <  2:2568631/150‑1 (MQ=255)
                                                                                                                                       ttCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCa                >  1:2363841/1‑150 (MQ=255)
                                                                                                                                       ttCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCa                <  2:1442104/150‑1 (MQ=255)
                                                                                                                                         ccGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATg              <  2:530591/150‑1 (MQ=255)
                                                                                                                                          cGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGt             >  2:573822/1‑150 (MQ=255)
                                                                                                                                           gtgtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGtt            <  1:3982741/150‑1 (MQ=255)
                                                                                                                                           gtgtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGtt            >  2:3254629/1‑150 (MQ=255)
                                                                                                                                            tgtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTc           <  1:1544162/150‑1 (MQ=255)
                                                                                                                                            tgtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTc           <  1:3454687/150‑1 (MQ=255)
                                                                                                                                                tGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGaaa       <  2:2078075/150‑1 (MQ=255)
                                                                                                                                                   aTGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGAAAAAc    <  2:11465/150‑1 (MQ=255)
                                                                                                                                                   aTGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGAAAAAc    <  1:1251425/150‑1 (MQ=255)
                                                                                                                                                   aTGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGAAAAAc    <  1:486324/150‑1 (MQ=255)
                                                                                                                                                     gAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGAAAAACgg  >  2:2188739/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCAGCAAGGAAAGCCACTGTGCGCGCCAGGAGACGCGCAAATCAGATTGCCACAGGACCACGTTCCCGGTTCCGTGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCAGTTAAACAGGTCCGGATCGTCACATTCCAGCAGACGAATAAAGATGCGTTTTTCGTCATCGCTTAAGCTGTCGTACTCATGTTCGAAAAACGG  >  CP009273/3034056‑3034354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A