Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F309 I0 R1 1697 197.2 6627756 95.7% 6342762 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,067,574 C→A 22.8% E159* (GAA→TAA)  yggC ← putative PanK family P‑loop kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,067,5740CA22.8% 506.7 / 103.0 201E159* (GAA→TAA) yggCputative PanK family P‑loop kinase
Reads supporting (aligned to +/- strand):  ref base C (77/78);  new base A (25/21);  total (102/99)
Fisher's exact test for biased strand distribution p-value = 6.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 202 total aligned reads displayed.

TCGGTGCGGGCATAAAATGCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGGCGCAGATTTTCCGTC  >  CP009273/3067429‑3067716
                                                                                                                                                 |                                                                                                                                              
tCGGTGCGGGCATAAAATGCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTtcat                                                                                                                                              <  1:629885/148‑1 (MQ=255)
    tGCGGGCATAAAATGCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCatcatc                                                                                                                                          <  1:3304089/148‑1 (MQ=255)
         gCATAAAATGCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTa                                                                                                                                     <  1:681892/148‑1 (MQ=255)
                 tGCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAg                                                                                                                             >  1:340289/1‑148 (MQ=255)
                  gCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGt                                                                                                                            <  2:3284774/148‑1 (MQ=255)
                  gCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGt                                                                                                                            >  1:1301886/1‑148 (MQ=255)
                  gCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGt                                                                                                                            <  2:2504342/148‑1 (MQ=255)
                  gCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGNGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGt                                                                                                                            <  1:1676903/148‑1 (MQ=255)
                   cTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGtt                                                                                                                           >  1:2687936/1‑148 (MQ=255)
                     tCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTc                                                                                                                         <  2:1022407/148‑1 (MQ=255)
                        gCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCtt                                                                                                                      <  1:1035335/148‑1 (MQ=255)
                           aCTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTcga                                                                                                                   <  1:2362995/148‑1 (MQ=255)
                           aCTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTcga                                                                                                                   >  1:2556670/1‑148 (MQ=255)
                           aCTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTcga                                                                                                                   >  1:2728608/1‑148 (MQ=255)
                            cTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTcgac                                                                                                                  >  1:1959486/1‑148 (MQ=255)
                             ttGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTcgacg                                                                                                                 <  1:206885/148‑1 (MQ=255)
                                   cgTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACg                                                                                                           >  1:1723350/1‑148 (MQ=255)
                                   cgTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACg                                                                                                           >  2:1379001/1‑148 (MQ=255)
                                   cgTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACg                                                                                                           >  1:1350886/1‑148 (MQ=255)
                                     ttAATGCTCCCGCAATTTTACGACTAATCAAGCGCTCCAGCAGTATTTGAGCAGGTTCATGAATAAAAATAGAATAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATGCAGTAACAACCATTTTCCTTCGACGATGACGAg                                                                                                         <  2:618842/148‑1 (MQ=255)
                                     ttAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAg                                                                                                         >  2:1364276/1‑148 (MQ=255)
                                     ttAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAg                                                                                                         <  2:481350/148‑1 (MQ=255)
                                     ttAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAg                                                                                                         <  2:618891/148‑1 (MQ=255)
                                      tAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAgt                                                                                                        <  2:879915/148‑1 (MQ=255)
                                      tAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTATCCTTCGACGATGACGAgt                                                                                                        <  1:534072/148‑1 (MQ=255)
                                        aTCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAgtgg                                                                                                      <  1:2158914/148‑1 (MQ=255)
                                        aTCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAgtgg                                                                                                      >  1:2434217/1‑148 (MQ=255)
                                            tccCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCg                                                                                                  <  1:3022729/148‑1 (MQ=255)
                                            tccCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCg                                                                                                  <  2:1447032/148‑1 (MQ=255)
                                             cccGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCgg                                                                                                 >  2:2694792/1‑148 (MQ=255)
                                             cccGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCgg                                                                                                 <  1:2517501/148‑1 (MQ=255)
                                             cccGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGGGCgg                                                                                                 >  2:2772477/1‑148 (MQ=255)
                                               cGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTa                                                                                               <  2:1660227/148‑1 (MQ=255)
                                                  aaTTTTACGACTAATCACGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACg                                                                                            <  2:2331823/148‑1 (MQ=255)
                                                  aaTTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACg                                                                                            <  1:2712392/148‑1 (MQ=255)
                                                    ttttACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTg                                                                                          >  1:1974694/1‑148 (MQ=255)
                                                    ttttACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTg                                                                                          <  2:2868043/148‑1 (MQ=255)
                                                       tACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCaa                                                                                       <  1:2171964/148‑1 (MQ=255)
                                                         cGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACg                                                                                     >  1:2658783/1‑148 (MQ=255)
                                                          gACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGc                                                                                    <  1:928622/148‑1 (MQ=255)
                                                           aCTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCa                                                                                   <  1:1015871/148‑1 (MQ=255)
                                                           aCTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCa                                                                                   >  2:1295475/1‑148 (MQ=255)
                                                           aCTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCa                                                                                   >  1:2148092/1‑148 (MQ=255)
                                                           aCTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGATTCCTTCGACGATGGCGAGTGGTGCGGTAACGTGCAACGCa                                                                                   >  2:312341/1‑148 (MQ=255)
                                                            cTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCAt                                                                                  >  1:2358569/1‑148 (MQ=255)
                                                               aTCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCtt                                                                               <  2:3100073/148‑1 (MQ=255)
                                                                tCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTc                                                                              >  1:1785875/1‑148 (MQ=255)
                                                                 cAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCa                                                                             <  2:1892210/148‑1 (MQ=255)
                                                                 cAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCa                                                                             >  2:700728/1‑148 (MQ=255)
                                                                   aGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAAAGTGCAACGCATCTTCAAc                                                                           <  1:174434/148‑1 (MQ=255)
                                                                    gcgcTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACa                                                                          >  1:1869046/1‑148 (MQ=255)
                                                                     cgcTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAg                                                                         >  1:1378298/1‑148 (MQ=255)
                                                                       cTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGa                                                                       >  2:1116728/1‑148 (MQ=255)
                                                                          ccGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCa                                                                    >  2:2535958/1‑148 (MQ=255)
                                                                            gCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATg                                                                  <  1:2775632/148‑1 (MQ=255)
                                                                             cAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGc                                                                 <  1:666451/148‑1 (MQ=255)
                                                                               gAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCtt                                                               <  1:743275/148‑1 (MQ=255)
                                                                               gAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCtt                                                               <  2:1004843/148‑1 (MQ=255)
                                                                                 aTTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCtttt                                                             >  1:1033038/1‑148 (MQ=255)
                                                                                  tttGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTg                                                            <  2:1273778/148‑1 (MQ=255)
                                                                                  tttGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTg                                                            >  1:121018/1‑148 (MQ=255)
                                                                                   ttGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCtgttgt                                                           >  2:684392/1‑148 (MQ=255)
                                                                                      aGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGa                                                        <  2:780728/148‑1 (MQ=255)
                                                                                       gCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGAt                                                       >  2:2145401/1‑148 (MQ=255)
                                                                                        cAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATc                                                      <  1:425394/148‑1 (MQ=255)
                                                                                         aGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCg                                                     <  1:308655/148‑1 (MQ=255)
                                                                                          ggTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGt                                                    <  2:1974694/148‑1 (MQ=255)
                                                                                           gTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTa                                                   >  2:555176/1‑148 (MQ=255)
                                                                                           gTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTa                                                   <  2:3293632/148‑1 (MQ=255)
                                                                                           gTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTa                                                   <  2:393948/148‑1 (MQ=255)
                                                                                           gTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTa                                                   <  2:607572/148‑1 (MQ=255)
                                                                                               aTGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGc                                               >  1:1882809/1‑148 (MQ=255)
                                                                                                 gAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCgg                                             >  1:1128199/1‑148 (MQ=255)
                                                                                                 gAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCgg                                             >  1:2051238/1‑148 (MQ=255)
                                                                                                 gAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCgg                                             >  2:829073/1‑148 (MQ=255)
                                                                                                   aTAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGcc                                           >  1:2267895/1‑148 (MQ=255)
                                                                                                    tAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCa                                          >  2:46351/1‑148 (MQ=255)
                                                                                                     aaaaaTAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCAc                                         >  2:2118240/1‑148 (MQ=255)
                                                                                                       aaaTAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGt                                       >  2:1552933/1‑148 (MQ=255)
                                                                                                        aaTAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTa                                      >  2:3004074/1‑148 (MQ=255)
                                                                                                        aaTAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTa                                      >  1:2615749/1‑148 (MQ=255)
                                                                                                           aGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACaa                                   <  2:3060381/148‑1 (MQ=255)
                                                                                                           aGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGAACaa                                   >  2:2301165/1‑148 (MQ=255)
                                                                                                            gAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAAt                                  <  1:239484/148‑1 (MQ=255)
                                                                                                                    gCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTcc                          <  1:985605/148‑1 (MQ=255)
                                                                                                                    gCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTcc                          <  1:1491538/148‑1 (MQ=255)
                                                                                                                        aaaGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGa                      >  1:2890604/1‑148 (MQ=255)
                                                                                                                        aaaGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGa                      >  1:2891528/1‑148 (MQ=255)
                                                                                                                        aaaGATGCCAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGa                      >  1:2720350/1‑148 (MQ=255)
                                                                                                                          aGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGAcc                    >  1:1055090/1‑148 (MQ=255)
                                                                                                                          aGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGAcc                    >  2:2590353/1‑148 (MQ=255)
                                                                                                                           gATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCt                   >  2:529207/1‑148 (MQ=255)
                                                                                                                           gATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCt                   >  1:157745/1‑148 (MQ=255)
                                                                                                                             tGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTgg                 >  1:1553338/1‑148 (MQ=255)
                                                                                                                             tGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTgg                 <  1:2951008/148‑1 (MQ=255)
                                                                                                                                cAACTCCAGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGgcgc              >  1:2561830/1‑148 (MQ=255)
                                                                                                                                  aCTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGGCGCAg            <  2:1159652/148‑1 (MQ=255)
                                                                                                                                       aGCCACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGGCGCAGAtttt       <  1:829073/148‑1 (MQ=255)
                                                                                                                                          cACTTTTAATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGGCGCAGATTTTCCg    <  1:2042880/148‑1 (MQ=255)
                                                                                                                                           aCTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGGCGCAGATTTTCCgc   >  2:1487020/1‑147 (MQ=255)
                                                                                                                                                 |                                                                                                                                              
TCGGTGCGGGCATAAAATGCTTCGGCTACTTGCCGCGTTAATCCTCCCGCAATTTTACGACTAATCAAGCGCTCCCGCAGAATTTGAGCAGGTGCATGAATAAAAATAGAAAAATCGCAGAAAGATGCCAACTCCAGCCACTTTTCATCATCCAGTAACAACCAGTTTCCTTCGACGATGACGAGTGGTGCGGTAACGTGCAACGCATCTTCAACAGGATCATGCTTTTGTCGATCGTACTGCGGCCACGTACAATCCCCTTCCACGACCTGGCGCAGATTTTCCGTC  >  CP009273/3067429‑3067716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A