Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F309 I0 R1
|
1697 |
197.2 |
6627756 |
95.7% |
6342762 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,519,359 |
C→A |
27.9% |
V50V (GTG→GTT) |
nudE ← |
adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,519,359 | 0 | C | A | 27.9%
| 341.0
/ 107.2
| 161 | V50V (GTG→GTT) | nudE | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH |
| Reads supporting (aligned to +/- strand): ref base C (59/57); new base A (29/16); total (88/73) |
| Fisher's exact test for biased strand distribution p-value = 1.58e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 169 total aligned reads displayed.
TCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTC > CP009273/3519213‑3519506
|
ttcttTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACt > 1:1948852/1‑148 (MQ=255)
ttcttTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACt > 1:147448/1‑148 (MQ=255)
cttTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGc < 2:1097102/148‑1 (MQ=255)
cttTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGc < 2:2749135/148‑1 (MQ=255)
tttAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCtt < 1:1695693/148‑1 (MQ=255)
tAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTcc < 1:1578724/148‑1 (MQ=255)
gCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCg > 1:1647118/1‑148 (MQ=255)
gCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCg > 1:247010/1‑148 (MQ=255)
gCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGATTCCCg > 2:301657/1‑148 (MQ=255)
cTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCgg > 1:3062642/1‑148 (MQ=255)
ttAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGgttggttg > 1:1466738/1‑148 (MQ=255)
gCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGAc > 1:1369353/1‑148 (MQ=255)
cGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACg > 1:2233613/1‑148 (MQ=255)
cTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCAt < 1:1576329/148‑1 (MQ=255)
tCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTc > 1:1147935/1‑148 (MQ=255)
cGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCg < 2:2654494/148‑1 (MQ=255)
tAGACGCTTTCACCCGGATCAATTAATCCTTTCTAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGtt < 2:2128532/148‑1 (MQ=255)
tAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGtt > 1:766688/1‑148 (MQ=255)
aCGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCAt > 1:2651358/1‑148 (MQ=255)
aCGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCAt > 1:2047681/1‑148 (MQ=255)
cGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATa > 2:678925/1‑148 (MQ=255)
cTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATaaa > 1:1930799/1‑148 (MQ=255)
cTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATaaa > 2:70569/1‑148 (MQ=255)
tttCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAac < 1:3286417/148‑1 (MQ=255)
tttCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAac < 1:3286386/148‑1 (MQ=255)
ttCACCCGGCTCAATTAATCCTTGCGAAAAACCTAATTCGTAGTATACAGTTCACACTGCGTATAAGCGGATCAGTATCAGGATATCGTACACAATCGGCACAAACATCACTGCGTCCCTGATGTTTGTACGCAATCGATCATAAaca > 1:1049106/1‑148 (MQ=255)
ttCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAaca > 2:334395/1‑148 (MQ=255)
cACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACAcg < 1:2681098/148‑1 (MQ=255)
aCCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACAcgc < 1:132239/148‑1 (MQ=255)
ccGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGGTGGTTGGACGCATTCGTTCATAAACAcgccg > 2:1149791/1‑148 (MQ=255)
cGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACAcgccgc > 2:1173426/1‑148 (MQ=255)
cAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTAGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGcc > 1:2122888/1‑148 (MQ=255)
ttAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCAtt > 1:2408923/1‑148 (MQ=255)
ttAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCAtt > 2:2218978/1‑148 (MQ=255)
tAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTg < 1:1439764/148‑1 (MQ=255)
tCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTg > 1:853251/1‑148 (MQ=255)
tCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTg > 1:2290191/1‑148 (MQ=255)
tCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTg > 1:671206/1‑148 (MQ=255)
ccTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGa > 1:2556297/1‑148 (MQ=255)
ccTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGa > 1:2558619/1‑148 (MQ=255)
aaaCCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGATTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGAt > 2:1607914/1‑148 (MQ=255)
aaCCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATc < 1:996395/148‑1 (MQ=255)
ccTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCa < 2:1466738/148‑1 (MQ=255)
ccTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCa > 1:1308191/1‑148 (MQ=255)
ccTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCa > 1:1308073/1‑148 (MQ=255)
aTTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGct > 1:2006770/1‑148 (MQ=255)
tCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGctct < 2:95933/148‑1 (MQ=255)
tAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGa > 1:1969636/1‑148 (MQ=255)
tAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGGTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGa > 2:1424066/1‑148 (MQ=255)
aGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGAc > 1:2881188/1‑148 (MQ=255)
aGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGAc > 1:1391542/1‑148 (MQ=255)
gATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACgg < 1:1942794/148‑1 (MQ=255)
gATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACgg > 1:759542/1‑148 (MQ=255)
aGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAAc < 2:1647118/148‑1 (MQ=255)
ttCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAg > 1:2925776/1‑148 (MQ=255)
tCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGt < 2:1821380/148‑1 (MQ=255)
cccACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTc > 2:419574/1‑148 (MQ=255)
ccACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCg > 1:2231650/1‑148 (MQ=255)
cACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCgg > 2:2202468/1‑148 (MQ=255)
cttcGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGa < 1:2412465/145‑1 (MQ=255)
cTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGa > 1:2925808/1‑148 (MQ=255)
cTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGa < 1:624092/148‑1 (MQ=255)
cTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGa > 1:2925935/1‑148 (MQ=255)
cGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACg < 2:1299447/148‑1 (MQ=255)
cGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACg < 2:1445862/148‑1 (MQ=255)
cGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACg > 1:1000739/1‑148 (MQ=255)
gTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACgg < 2:583556/148‑1 (MQ=255)
gTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACgg < 2:583573/148‑1 (MQ=255)
aTTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGc > 1:1685800/1‑148 (MQ=255)
aTTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGc < 1:150426/148‑1 (MQ=255)
aTTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGc < 2:500484/148‑1 (MQ=255)
aTTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGc > 2:1599603/1‑148 (MQ=255)
aTTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGc < 1:2218978/148‑1 (MQ=255)
tCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTa > 1:1529417/1‑148 (MQ=255)
ggatcaggatcaGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGt < 2:51091/148‑1 (MQ=255)
gatcaggatcagGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGtt < 1:3048652/148‑1 (MQ=255)
aggatcaggTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCaa < 1:1997441/148‑1 (MQ=255)
aggatcaggTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCaa > 1:1519843/1‑148 (MQ=255)
ggatcaggTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAAc < 2:1274567/148‑1 (MQ=255)
caggTGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTc > 2:2091014/1‑148 (MQ=255)
gTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGa > 1:1780957/1‑148 (MQ=255)
tGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGaa < 1:2130502/148‑1 (MQ=255)
tGATCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGaa < 1:1501030/148‑1 (MQ=255)
aTCGTCCACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAAtg > 1:3115595/1‑148 (MQ=255)
tCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAAtgg > 1:602814/1‑148 (MQ=255)
ccACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTggg < 2:2290191/148‑1 (MQ=255)
ccACAATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTggg < 2:671107/148‑1 (MQ=255)
cacaATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGt < 1:899396/148‑1 (MQ=255)
acaATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGtt > 2:1421323/1‑148 (MQ=255)
acaATCGGCACAATCATAACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGtt > 2:2945982/1‑148 (MQ=255)
caATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGttt < 2:795128/148‑1 (MQ=255)
caATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGttt < 2:2925237/148‑1 (MQ=255)
aaTCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGtttt < 2:2407636/148‑1 (MQ=255)
aTCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGttttt > 1:2991402/1‑148 (MQ=255)
gCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTaa < 1:884342/148‑1 (MQ=255)
gCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTaa < 2:247010/148‑1 (MQ=255)
acaATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATg < 1:2620780/148‑1 (MQ=255)
tcaCTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCt > 1:1433743/1‑148 (MQ=255)
caCTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTc < 1:634260/148‑1 (MQ=255)
caCTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTc > 1:41672/1‑148 (MQ=255)
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TCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTC > CP009273/3519213‑3519506
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
