Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F368 I0 R1
|
1472 |
214.4 |
7116750 |
95.9% |
6824963 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
388,792 |
C→A |
34.0% |
pseudogene (367/1449 nt) |
yaiT → |
pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 388,792 | 0 | C | A | 34.0%
| 354.6
/ 183.2
| 217 | pseudogene (367/1449 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| Reads supporting (aligned to +/- strand): ref base C (56/87); new base A (35/39); total (91/126) |
| Fisher's exact test for biased strand distribution p-value = 3.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 218 total aligned reads displayed.
TCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAG > CP009273/388645‑388935
|
cAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGt < 1:1335456/148‑1 (MQ=255)
aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTa > 1:3037097/1‑148 (MQ=255)
tAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGAc < 2:2475837/148‑1 (MQ=255)
aaCTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACa > 1:124856/1‑148 (MQ=255)
aCTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACaa > 1:1994337/1‑148 (MQ=255)
cTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAAc > 1:1983009/1‑148 (MQ=255)
tacggttacggtATTGTTGCTATTAACTCTGATGTTCACCTGACTATCAACGGTAACGTCGAAGTAGAAAACGGTACTGAACTGGATAACATATCTTTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACg < 1:3113679/148‑1 (MQ=255)
tacggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACg > 1:605440/1‑148 (MQ=255)
cggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCa < 1:2137628/148‑1 (MQ=255)
ggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCaa < 1:3132622/148‑1 (MQ=255)
cggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggc > 2:226086/1‑148 (MQ=255)
tATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgct > 2:591531/1‑148 (MQ=255)
tgttgCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctggc > 2:3377471/1‑148 (MQ=255)
tgCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTggcgctggcgct > 1:2315198/1‑148 (MQ=255)
gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTa < 2:1901753/148‑1 (MQ=255)
gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTa < 2:231910/148‑1 (MQ=255)
taagAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATc > 1:334021/4‑148 (MQ=255)
aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCg < 1:563010/148‑1 (MQ=255)
aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCg > 2:3511836/1‑148 (MQ=255)
gAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCt < 2:2353789/148‑1 (MQ=255)
aaCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg < 2:3421564/148‑1 (MQ=255)
aaCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg < 2:964023/148‑1 (MQ=255)
aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa > 2:2125220/1‑148 (MQ=255)
aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa < 1:275258/148‑1 (MQ=255)
aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa < 2:652717/148‑1 (MQ=255)
aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa < 1:1548310/148‑1 (MQ=255)
ctctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAt > 1:2574891/1‑148 (MQ=255)
ctctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAt < 1:1187417/148‑1 (MQ=255)
ctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTa > 1:3500560/1‑148 (MQ=255)
aTGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACaa < 2:1258170/148‑1 (MQ=255)
aTGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACaa < 1:2695080/148‑1 (MQ=255)
ggTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAg < 1:1376438/148‑1 (MQ=255)
gTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGa < 1:866050/148‑1 (MQ=255)
tCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTAt > 1:941519/1‑132 (MQ=255)
tCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTAt < 2:942456/132‑1 (MQ=255)
aCCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaa < 2:897953/148‑1 (MQ=255)
aCCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaa > 2:2903317/1‑148 (MQ=255)
tGACTATCAACGGTAACGGCGACGTATACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGa < 2:3245596/148‑1 (MQ=255)
gACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaa < 2:2290573/148‑1 (MQ=255)
aCTATCAACGGTACCGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaaa < 2:1717190/148‑1 (MQ=255)
aCTAGCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaaa < 2:2598005/148‑1 (MQ=255)
cTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAt < 2:2978847/148‑1 (MQ=255)
tATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAtt < 1:1023735/148‑1 (MQ=255)
tATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAtt < 2:844249/148‑1 (MQ=255)
cAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATc < 2:1561962/148‑1 (MQ=255)
cAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATc > 1:3224126/1‑148 (MQ=255)
aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt < 2:3237093/148‑1 (MQ=255)
aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt < 1:2802903/148‑1 (MQ=255)
aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt < 1:2419881/148‑1 (MQ=255)
aCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTa < 1:434821/148‑1 (MQ=255)
gTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGt > 2:418542/1‑148 (MQ=255)
gTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGt < 1:2475555/148‑1 (MQ=255)
aCGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGt < 1:2427004/148‑1 (MQ=255)
aCAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAg > 2:850418/1‑148 (MQ=255)
cAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGc > 2:280887/1‑148 (MQ=255)
aaCGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCa > 1:186178/1‑148 (MQ=255)
tACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcgcg > 1:2633857/1‑148 (MQ=255)
gAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCt > 1:3030289/1‑148 (MQ=255)
aaCTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt > 2:297976/1‑148 (MQ=255)
aaCTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt > 2:3086340/1‑148 (MQ=255)
cTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTtct < 2:1079748/148‑1 (MQ=255)
aaCAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgctg < 2:1748838/148‑1 (MQ=255)
aaCAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgctg < 2:1429075/148‑1 (MQ=255)
aGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCt < 1:1970260/148‑1 (MQ=255)
aCAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGa > 2:2077206/1‑148 (MQ=255)
aCAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGa > 1:1319490/1‑148 (MQ=255)
cAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGAc > 2:1352313/1‑148 (MQ=255)
aaTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGAcc > 2:2762595/1‑148 (MQ=255)
aTGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt < 1:555422/148‑1 (MQ=255)
aTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt > 1:836075/1‑148 (MQ=255)
aTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt > 2:3299928/1‑148 (MQ=255)
aTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt > 1:1926511/1‑148 (MQ=255)
ttgCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGc > 2:3297779/1‑148 (MQ=255)
gctgcAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCAt < 2:1994337/148‑1 (MQ=255)
tgcAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATac < 1:2940549/148‑1 (MQ=255)
aaCCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACAcc < 2:154433/148‑1 (MQ=255)
aCCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCt > 1:1063557/1‑148 (MQ=255)
aCCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCt < 1:144341/148‑1 (MQ=255)
ccGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTa > 2:3000372/1‑148 (MQ=255)
cGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCTCTGGCGCTATCGCTGATTAAAAAGATAAAGAAATTATCTTCGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTTACGTGGGTGCATACACCTAt < 2:738066/148‑1 (MQ=255)
cGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTAt < 1:1419926/148‑1 (MQ=255)
cGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTAt < 1:1419970/148‑1 (MQ=255)
ggTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATc > 2:3102525/1‑148 (MQ=255)
ggTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATc < 2:622424/148‑1 (MQ=255)
gTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCa < 2:2862513/148‑1 (MQ=255)
tAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAg > 2:799203/1‑148 (MQ=255)
tAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAg > 2:253134/1‑148 (MQ=255)
aaCTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAgg < 2:509565/148‑1 (MQ=255)
aaCTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAgg < 2:605440/148‑1 (MQ=255)
aaCTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAgg > 2:3359490/1‑148 (MQ=255)
aCTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGc < 2:2910370/148‑1 (MQ=255)
aCTACAAAGTGAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGc < 2:2910744/148‑1 (MQ=255)
cTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCt > 2:1996257/1‑148 (MQ=255)
aCAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGa > 2:258965/1‑148 (MQ=255)
cAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGaa > 2:1604282/1‑148 (MQ=255)
cAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGaa > 2:2554454/1‑148 (MQ=255)
aaGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACa < 1:1392077/148‑1 (MQ=255)
aGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAg < 1:2922272/148‑1 (MQ=255)
aGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAg > 1:1986871/1‑148 (MQ=255)
aGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAg > 2:3504398/1‑148 (MQ=255)
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TCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAG > CP009273/388645‑388935
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
