Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F368 I0 R1 1472 214.4 7116750 95.9% 6824963 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,731,596 C→A 15.8% intergenic (‑49/+117) ydhP ← / ← ynhF putative transporter/stress response membrane

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,731,5960CA15.8% 777.9 / 85.2 259intergenic (‑49/+117)ydhP/ynhFputative transporter/stress response membrane
Reads supporting (aligned to +/- strand):  ref base C (120/98);  new base A (24/17);  total (144/115)
Fisher's exact test for biased strand distribution p-value = 7.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01

Only 100 of 259 total aligned reads displayed.

CGCGCAATGACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGC  >  CP009273/1731450‑1731742
                                                                                                                                                  |                                                                                                                                                  
    cAATGACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAg                                                                                                                                               <  2:2924474/148‑1 (MQ=255)
     aaTGACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGc                                                                                                                                              >  1:2964321/1‑148 (MQ=255)
      aTGACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCa                                                                                                                                             >  1:1354166/1‑148 (MQ=255)
      aTGACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCa                                                                                                                                             >  1:941767/1‑148 (MQ=255)
        gACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATg                                                                                                                                           <  2:1198762/148‑1 (MQ=255)
        gACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATg                                                                                                                                           <  2:1318616/148‑1 (MQ=255)
         aCGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGa                                                                                                                                          >  1:1546270/1‑148 (MQ=255)
              caacaaGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCa                                                                                                                                     >  2:2195039/1‑148 (MQ=255)
                acaaGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAAt                                                                                                                                   <  2:1569979/148‑1 (MQ=255)
                 caaGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATc                                                                                                                                  >  1:2529565/1‑148 (MQ=255)
                 caaGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATc                                                                                                                                  <  1:2077772/148‑1 (MQ=255)
                 caaGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATc                                                                                                                                  >  2:259600/1‑148 (MQ=255)
                 caaGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATc                                                                                                                                  >  1:3101749/1‑148 (MQ=255)
                   aGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATcac                                                                                                                                >  2:3273012/1‑148 (MQ=255)
                         ttGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACaaaaaa                                                                                                                          <  2:353978/148‑1 (MQ=255)
                          tGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACaaaaaaa                                                                                                                         <  1:1246804/148‑1 (MQ=255)
                            gCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATg                                                                                                                       <  2:1788827/148‑1 (MQ=255)
                               agaACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGaaa                                                                                                                    >  1:568355/1‑148 (MQ=255)
                                gaACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGaaaa                                                                                                                   >  1:1096287/1‑148 (MQ=255)
                                  aCTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATa                                                                                                                 <  2:1432775/148‑1 (MQ=255)
                                   cTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATaa                                                                                                                >  1:2550699/1‑148 (MQ=255)
                                     ccGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACa                                                                                                              <  1:319090/148‑1 (MQ=255)
                                      cGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaa                                                                                                             >  2:3005906/1‑148 (MQ=255)
                                        ttGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaaaa                                                                                                           >  1:1415385/1‑148 (MQ=255)
                                        ttGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaaaa                                                                                                           >  1:1415638/1‑148 (MQ=255)
                                         tGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaaaaa                                                                                                          >  2:3205671/1‑148 (MQ=255)
                                         tGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaaaaa                                                                                                          >  1:2679768/1‑148 (MQ=255)
                                          gTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAag                                                                                                         <  1:1687177/148‑1 (MQ=255)
                                           tCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAaga                                                                                                        <  1:2995487/148‑1 (MQ=255)
                                              cGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGaa                                                                                                     >  2:2836634/1‑148 (MQ=255)
                                                aTACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGaaaa                                                                                                   >  1:2367527/1‑148 (MQ=255)
                                                aTACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGaaaa                                                                                                   >  1:581792/1‑148 (MQ=255)
                                                     aaaCGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACtt                                                                                              >  2:222988/1‑148 (MQ=255)
                                                     aaaCGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACtt                                                                                              <  1:1123991/148‑1 (MQ=255)
                                                     aaaCGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACtt                                                                                              <  2:1057196/148‑1 (MQ=255)
                                                       aCGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACtttt                                                                                            >  1:2602623/1‑148 (MQ=255)
                                                          cgcCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGcc                                                                                         <  1:897403/148‑1 (MQ=255)
                                                          cgcCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGcc                                                                                         <  1:2776159/148‑1 (MQ=255)
                                                          cgcCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCATTATCTCCACCTCTTCGCTTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGcc                                                                                         <  2:1890726/148‑1 (MQ=255)
                                                          cgcAAATCGCCAGGGCCATAAACGTATAGTTTATTTTGATGCATTATCTCCACCTCTTGGCTTAATTACGGTTTATTCATTAAAGTGGATAATGCATGACAGAAATAAAAATAAAATGAAAATAAAAAAAAGAGAAAACACTTTTGcc                                                                                         <  1:909299/148‑1 (MQ=255)
                                                           gcCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCa                                                                                        >  2:176201/1‑148 (MQ=255)
                                                              aaTCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt                                                                                     >  1:1481624/1‑148 (MQ=255)
                                                              aaTCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt                                                                                     >  2:3206226/1‑148 (MQ=255)
                                                              aaTCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt                                                                                     <  1:1003428/148‑1 (MQ=255)
                                                                tCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTg                                                                                   <  1:1982767/148‑1 (MQ=255)
                                                                tCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTg                                                                                   <  2:1113613/148‑1 (MQ=255)
                                                                  gccagcgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCt                                                                                 <  1:1846287/148‑1 (MQ=255)
                                                                     agcgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTaac                                                                              >  2:2599634/1‑148 (MQ=255)
                                                                      gcgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTaaca                                                                             >  2:2120619/1‑148 (MQ=255)
                                                                       cgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTTGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTTCTaacaa                                                                            >  2:1327799/1‑148 (MQ=255)
                                                                       cgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTaacaa                                                                            <  2:1481624/148‑1 (MQ=255)
                                                                          cagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTaacaaaca                                                                         <  2:63769/148‑1 (MQ=255)
                                                                            gcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACagg                                                                       <  2:2550699/148‑1 (MQ=255)
                                                                               aCGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACaggaag                                                                    >  1:771686/1‑148 (MQ=255)
                                                                                cGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACaggaagg                                                                   >  1:44445/1‑148 (MQ=255)
                                                                                  gATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGgag                                                                 <  1:2127027/148‑1 (MQ=255)
                                                                                    tAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTGTGCTAACAAACAGGAAGGAGAt                                                               >  1:3337796/1‑148 (MQ=255)
                                                                                    tAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGAt                                                               >  2:1869488/1‑148 (MQ=255)
                                                                                     aGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATg                                                              <  2:3378099/148‑1 (MQ=255)
                                                                                     aGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATg                                                              >  2:342396/1‑148 (MQ=255)
                                                                                       ttAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCg                                                            <  1:10369/148‑1 (MQ=255)
                                                                                        tAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGa                                                           <  1:2109634/148‑1 (MQ=255)
                                                                                          aTTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAgg                                                         >  1:3504886/1‑148 (MQ=255)
                                                                                           ttttCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAggg                                                        >  2:2702193/1‑148 (MQ=255)
                                                                                            tttCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGga                                                       <  2:520339/148‑1 (MQ=255)
                                                                                             ttCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGgag                                                      <  2:2098995/148‑1 (MQ=255)
                                                                                              tCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGgaga                                                     <  1:3552684/148‑1 (MQ=255)
                                                                                                 tGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAAcg                                                  <  1:1790967/148‑1 (MQ=255)
                                                                                                 tGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAAcg                                                  <  1:284886/148‑1 (MQ=255)
                                                                                                 tGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAAcg                                                  >  2:1270649/1‑148 (MQ=255)
                                                                                                  gCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAAcgc                                                 >  2:2772923/1‑148 (MQ=255)
                                                                                                  gCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAAcgc                                                 >  2:2725655/1‑148 (MQ=255)
                                                                                                  gCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAAcgc                                                 >  1:1216239/1‑148 (MQ=255)
                                                                                                    cTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACgcgc                                               >  1:3277405/1‑148 (MQ=255)
                                                                                                      tATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTc                                             <  1:2381486/148‑1 (MQ=255)
                                                                                                        tctcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTccc                                           >  2:2005359/1‑148 (MQ=255)
                                                                                                        tctcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTccc                                           >  2:1717740/1‑148 (MQ=255)
                                                                                                         ctcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCt                                          >  2:3049081/1‑148 (MQ=255)
                                                                                                          tcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTc                                         >  1:1572493/1‑148 (MQ=255)
                                                                                                           ccACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCg                                        >  2:2394096/1‑148 (MQ=255)
                                                                                                              ccTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCgaga                                     >  2:3133177/1‑148 (MQ=255)
                                                                                                              ccTCTTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCgaga                                     >  2:1532887/1‑148 (MQ=255)
                                                                                                               ctctTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGagag                                    <  1:3313476/148‑1 (MQ=255)
                                                                                                               ctctTCGCGTCATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGagag                                    >  2:1402005/1‑148 (MQ=255)
                                                                                                                tctTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAgg                                   >  2:922418/1‑148 (MQ=255)
                                                                                                                 ctTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGa                                  <  2:1161952/148‑1 (MQ=255)
                                                                                                                     gcgTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATc                              <  1:845213/148‑1 (MQ=255)
                                                                                                                         cATTACGCGATATTCATTACAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAACGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTg                          <  2:193032/148‑1 (MQ=255)
                                                                                                                         cATTACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTGTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTg                          <  2:3000014/148‑1 (MQ=255)
                                                                                                                            tACGCGATATTCATTAAAGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAg                       >  1:541707/1‑148 (MQ=255)
                                                                                                                             aCGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAgc                      >  2:566652/1‑148 (MQ=255)
                                                                                                                              cgcgATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAgcg                     <  1:634590/148‑1 (MQ=255)
                                                                                                                                      tCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGATAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGAAGTc             >  2:1544813/1‑148 (MQ=255)
                                                                                                                                         ttAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCaaa          >  1:52969/1‑148 (MQ=255)
                                                                                                                                          tAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAAc         >  1:3483902/1‑148 (MQ=255)
                                                                                                                                            aaGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAAccc       <  1:1532791/148‑1 (MQ=255)
                                                                                                                                            aaGTGGAGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAAccc       <  2:719783/148‑1 (MQ=255)
                                                                                                                                              gTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCAc     >  1:3351969/1‑148 (MQ=255)
                                                                                                                                                 gCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGc  >  2:2306430/1‑148 (MQ=255)
                                                                                                                                                 gCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGc  >  1:1826855/1‑148 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CGCGCAATGACGGGCAACAAGCCCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAAACAGGAAGGAGATGCGAGGGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGC  >  CP009273/1731450‑1731742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A