Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F368 I0 R1
|
1472 |
214.4 |
7116750 |
95.9% |
6824963 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,275,210 |
A→G |
100% |
intergenic (+226/‑125) |
agaA → / → agaS |
pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,275,210 | 0 | A | G | 95.6%
| 643.7
/ 10.4
| 183 | intergenic (+226/‑125) | agaA/agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
| Reads supporting (aligned to +/- strand): ref base A (5/3); new base G (79/89); total (84/99) |
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 183 total aligned reads displayed.
ATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCC > CP009273/3275066‑3275354
|
gCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGaa > 2:1779569/1‑148 (MQ=255)
gCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGaa > 2:2601984/1‑148 (MQ=255)
gCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGATTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGaa < 1:2134472/148‑1 (MQ=255)
gCGACGCTAACGCGTCTTATCCCACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTGTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGaa < 2:2296499/148‑1 (MQ=255)
cGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACttt < 1:878721/148‑1 (MQ=255)
cTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCCACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCa < 2:2478849/148‑1 (MQ=255)
cTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCa < 1:2934895/148‑1 (MQ=255)
tAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAg > 1:2781221/1‑148 (MQ=255)
aCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtt < 2:1893289/148‑1 (MQ=255)
cgcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGttt > 1:293997/1‑148 (MQ=255)
cgcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGttt > 1:2320324/1‑148 (MQ=255)
cgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttct > 2:2834383/1‑148 (MQ=255)
gTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttctt < 2:2977921/148‑1 (MQ=255)
cTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttctttt < 2:2218404/148‑1 (MQ=255)
ttATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttcttttc < 2:2074121/148‑1 (MQ=255)
tATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttcttttct < 2:243048/148‑1 (MQ=255)
tATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttcttttct < 2:2263880/148‑1 (MQ=255)
tATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttcttttct < 2:640737/148‑1 (MQ=255)
tATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTACTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttcttttct < 1:2372895/148‑1 (MQ=255)
aTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCta < 2:2356067/148‑1 (MQ=255)
aTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCta < 2:3466623/148‑1 (MQ=255)
aTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCta < 1:3296449/148‑1 (MQ=255)
gACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGa < 2:445724/148‑1 (MQ=255)
aCCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGAt < 2:478353/148‑1 (MQ=255)
aCAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCGATAGATTTTa > 2:3309297/1‑148 (MQ=255)
cAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTaa < 1:2619118/148‑1 (MQ=255)
aGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAAt > 2:137010/1‑148 (MQ=255)
ttGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCa < 2:547633/148‑1 (MQ=255)
ttGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCa > 1:1206136/1‑148 (MQ=255)
tGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCaa < 2:847200/148‑1 (MQ=255)
tGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTATCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGa < 1:557256/148‑1 (MQ=255)
gACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGaa < 1:1336265/148‑1 (MQ=255)
cAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACa < 2:2716919/148‑1 (MQ=255)
aaGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACAt < 2:2738622/148‑1 (MQ=255)
aGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATc < 2:1277500/148‑1 (MQ=255)
aGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATc < 2:1277561/148‑1 (MQ=255)
ggCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCa > 1:468194/1‑148 (MQ=255)
ggCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCa < 2:2655591/148‑1 (MQ=255)
ggCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCa > 1:2651963/1‑148 (MQ=255)
ccGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCAcc < 1:197586/148‑1 (MQ=255)
ccGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCAcc > 1:1959867/1‑148 (MQ=255)
ggATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCaa < 2:2831141/148‑1 (MQ=255)
aTAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGt < 2:3264697/148‑1 (MQ=255)
aaaGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtga > 2:2151230/1‑148 (MQ=255)
aaaGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtga > 1:3551798/1‑148 (MQ=255)
aaaGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACAAAGtga < 1:2584355/148‑1 (MQ=255)
gTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaaatga < 2:1076205/148‑1 (MQ=255)
gTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaaatga < 2:2373363/148‑1 (MQ=255)
tGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAAc < 1:1709442/148‑1 (MQ=255)
ccgcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGaaa < 1:97611/148‑1 (MQ=255)
cgcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAg < 1:2472680/148‑1 (MQ=255)
ccAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGATAGACATCACCAAGTGAAATGAAACgaaaggaaag > 2:1818651/1‑148 (MQ=255)
cAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGTTCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGaa > 2:3368190/1‑148 (MQ=255)
aaTCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCAGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGaaa < 1:839095/148‑1 (MQ=255)
tCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGc < 1:1995963/148‑1 (MQ=255)
tCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGc > 1:3109641/1‑148 (MQ=255)
tCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGc > 2:2044492/1‑148 (MQ=255)
ttttGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACa > 1:1413577/1‑148 (MQ=255)
tGCTTCCTTTATCTTTTATTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAATTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACg < 2:1427077/148‑1 (MQ=255)
ccTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGa > 1:1877389/1‑148 (MQ=255)
tttATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACg > 2:77847/1‑148 (MQ=255)
ttATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGt > 1:2070982/1‑148 (MQ=255)
aTCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCa > 1:1522331/1‑148 (MQ=255)
tcttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCaa > 2:2884211/1‑148 (MQ=255)
tcttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTACTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCaa < 2:1167756/148‑1 (MQ=255)
tttttattaCAACGATCAAATATTTTTTTTTTTTTATTTTTTCTCCGTTCAACTTTCTTTTTCTTTTCTTTTTATTTTAAAAAACGAAAGACATCCCCACGTCAAATTAAACGAAAGGCACGTGAACGCGACAACGCCCGACGTCAAg < 1:1058606/147‑1 (MQ=255)
cttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAACTGAAAGCGACAACGCCCGACGTCAAg > 1:2200826/1‑148 (MQ=255)
ttttctttCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGt > 2:3013039/1‑148 (MQ=255)
tttctttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAATTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGtt < 2:1098614/148‑1 (MQ=255)
tctttcAACGTTCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtca > 2:648284/1‑148 (MQ=255)
tctttcAACGTTCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtca > 2:2432294/1‑148 (MQ=255)
ttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcatca > 1:3407372/1‑148 (MQ=255)
ttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcatca > 1:421774/1‑148 (MQ=255)
ttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATAAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcatca > 1:3407168/1‑148 (MQ=255)
tcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAg > 2:214141/1‑148 (MQ=255)
aCGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACt > 1:3531214/1‑148 (MQ=255)
cGATCACAAGTTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAAACAAAGAAATACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCAACAGACTa > 2:2768595/1‑148 (MQ=255)
aTCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGATCATCAGACTAAg > 2:450462/1‑148 (MQ=255)
cacaAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGa > 1:1009577/1‑148 (MQ=255)
caaaaaTTTCTTTTTATTTCTTTTTACCCCGTTTAAATTTCTTTTTATTTTAAATATATTTTAAACAACTAAAGAAAAAACCATGTTAAATTAAACTAACGGCAAGTCAACGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGa < 1:796087/145‑1 (MQ=255)
acaAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAt > 1:633506/1‑148 (MQ=255)
acaAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAAACAACGAAAGACATCACCAAGTTAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAt < 2:17302/148‑1 (MQ=255)
aaTTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGa < 2:3124557/148‑1 (MQ=255)
ttCTTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGtt < 2:3542767/148‑1 (MQ=255)
ttCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGtt > 2:601779/1‑148 (MQ=255)
ttCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGtt < 2:3542461/148‑1 (MQ=255)
cGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTAt > 2:2903897/1‑148 (MQ=255)
ttttATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGc < 2:2231663/148‑1 (MQ=255)
gttATTTCTTTTTTCTCCGTTGAACTTTCAGATTCTTTTCTATAGATTTTAATCAACGAAAGACATCACAAAGTGAAATTAAACGAAAGTCACTTGAAAGCGACAACGCCCGACGTCAATTTCATCAGACGAAGGATTGACTTATGcc > 1:491413/2‑148 (MQ=255)
ttCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaa > 2:1736299/1‑148 (MQ=255)
ttCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaa < 2:2029817/148‑1 (MQ=255)
ttCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaa < 2:2063577/148‑1 (MQ=255)
ttCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGGCAAGTTCATCAGCCTAAGGATTGAGTTATGCCAGaaa > 2:2319214/1‑148 (MQ=255)
tCTTTTTTCTCCTTTTAACTTTCTTTTTCTTTTCTATACATTTTAAAAAACTAAACACAACACCAAGTTAAATGAAACTAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaaa < 1:2456919/148‑1 (MQ=255)
tCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaaa < 1:885723/148‑1 (MQ=255)
cTTTTTTCTCCTTTGAACTTTCATTTTCTTTTCTATAGATTTTAAACAACGAAAGACATCACCAAGTGAAATTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAAt < 1:1437856/148‑1 (MQ=255)
ttttttCTCCTTTTAACTTTCTGTTTCTTTTCTTTATTTTTTAAACAACTAAAGAAAACACCAAGTTAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAAtt < 1:3409767/148‑1 (MQ=255)
ttttttCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAAtt > 1:2715746/1‑148 (MQ=255)
tttttCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAACGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTa > 1:1524367/1‑148 (MQ=255)
tctcCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACAcc < 2:1492775/148‑1 (MQ=255)
|
ATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCC > CP009273/3275066‑3275354
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCT > CP009273/3275063‑3275355
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CGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTT < SRR19973067.617159/150‑1 (MQ=60)
GCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACT < SRR19973067.2148722/150‑1 (MQ=60)
GCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGATTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACT < SRR19973067.2148726/150‑1 (MQ=60)
CGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCA > SRR19973067.2475445/1‑150 (MQ=60)
CGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCA < SRR19973067.884578/150‑1 (MQ=60)
GCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAG > SRR19973067.2610892/1‑150 (MQ=60)
GCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAG > SRR19973067.2799173/1‑150 (MQ=60)
CTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGT < SRR19973067.2954572/150‑1 (MQ=60)
CTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGT < SRR19973067.2953518/150‑1 (MQ=60)
AACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTT > SRR19973067.295881/1‑150 (MQ=60)
AACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTT > SRR19973067.2335581/1‑150 (MQ=60)
GTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTT > SRR19973067.3490756/1‑150 (MQ=60)
TATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTAT < SRR19973067.2290330/150‑1 (MQ=60)
TATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTACTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTAT < SRR19973067.2388330/150‑1 (MQ=60)
ATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATA < SRR19973067.3317201/150‑1 (MQ=60)
CAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATC < SRR19973067.2636106/150‑1 (MQ=60)
AGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCA > SRR19973067.1214038/1‑150 (MQ=60)
AGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCGTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCA < SRR19973067.1848689/150‑1 (MQ=60)
GGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTGTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGA > SRR19973067.332514/1‑150 (MQ=60)
TGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCACTTTTGCTTACTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTATCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAA < SRR19973067.560910/150‑1 (MQ=60)
GACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAG < SRR19973067.1345401/150‑1 (MQ=60)
CAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATC < SRR19973067.550611/150‑1 (MQ=60)
CAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATC < SRR19973067.940986/150‑1 (MQ=60)
AAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCA > SRR19973067.471433/1‑150 (MQ=60)
AAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCA > SRR19973067.2669057/1‑150 (MQ=60)
GGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACC > SRR19973067.1973188/1‑150 (MQ=60)
GGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACC < SRR19973067.1570115/150‑1 (MQ=60)
CCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAA < SRR19973067.199107/150‑1 (MQ=60)
ATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGA > SRR19973067.3574198/1‑150 (MQ=60)
ATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGA > SRR19973067.3574216/1‑150 (MQ=60)
AAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACAAAGTGAAA < SRR19973067.2601185/150‑1 (MQ=60)
TGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGA < SRR19973067.1721170/150‑1 (MQ=60)
TGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGA < SRR19973067.760028/150‑1 (MQ=60)
GCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAA < SRR19973067.1185608/150‑1 (MQ=60)
CCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGG < SRR19973067.98618/150‑1 (MQ=60)
CGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGC < SRR19973067.2488933/150‑1 (MQ=60)
ATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAG > SRR19973067.582476/1‑150 (MQ=60)
CAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAATTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGA > SRR19973067.822869/1‑150 (MQ=60)
AATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGC > SRR19973067.3129422/1‑150 (MQ=60)
AATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCAGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGC < SRR19973067.844790/150‑1 (MQ=60)
TCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGA < SRR19973067.2009442/150‑1 (MQ=60)
CCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGAC > SRR19973067.42946/1‑150 (MQ=60)
CCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACA > SRR19973067.1423148/1‑150 (MQ=60)
CCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACA > SRR19973067.1423143/1‑150 (MQ=60)
CTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCG > SRR19973067.2077309/1‑150 (MQ=60)
TTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGA > SRR19973067.1890196/1‑150 (MQ=60)
TTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGA > SRR19973067.1890207/1‑150 (MQ=60)
TTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAATTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGA > SRR19973067.2929401/1‑150 (MQ=60)
CTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGT > SRR19973067.2084741/1‑150 (MQ=60)
TTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCA > SRR19973067.1532541/1‑150 (MQ=60)
TTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCA > SRR19973067.1533003/1‑150 (MQ=60)
TATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAACTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAA > SRR19973067.2716449/1‑150 (MQ=60)
ATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAACTGAAAGCGACAACGCCCGACGTCAAG > SRR19973067.2215508/1‑150 (MQ=60)
tttttattacaacgatcaaatatttttttttttttaTTTTTTCTCCGTTCAACTTTCTTTTTCTTTTCTTTTTATTTTAAAAAACGAAAGACATCCCCACGTCAAATTAAACGAAAGGCACGTGAACGCGACAACGCCCGACGTCAAGTT < SRR19973067.1065864/114‑1 (MQ=27)
TCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATC > SRR19973067.1216985/1‑150 (MQ=60)
CTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCA > SRR19973067.3429059/1‑150 (MQ=60)
CTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCA > SRR19973067.424709/1‑150 (MQ=60)
CTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATAAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCA > SRR19973067.3428855/1‑150 (MQ=60)
CTTTCAACGATCAAAAATTTCGTTTAATTTCTTTTTTCGCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCCCCACGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCA < SRR19973067.2336617/150‑1 (MQ=60)
TTACAACCATCAAAAATTTCTTTTTATTTATTTTTTCTCCTTTTAACTTTAATTTTATTTTATTTATATTTTAAAAAACGAAACACATCACAACTTTAAATTAAACGAAAGGCAAGTCAAAGCGACAACGCCCGACGTCAAGTTCATCAG < SRR19973067.138231/150‑1 (MQ=28)
aacctataacaattttttTTTTATTTCTTTTTTCTCCGTTTAACTTTCATTTTTTTTTATTTAGATTTTAAAAAACTAAATAAAACACCAAGTGAATTGAAACTAAAGGAAAGTAAAAGCGACAACGCCCGACGTCAAGTTCATCAGACT < SRR19973067.104851/132‑1 (MQ=45)
CAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACT > SRR19973067.3553537/1‑150 (MQ=60)
AACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTA > SRR19973067.3112189/1‑150 (MQ=60)
ATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGA > SRR19973067.1016513/1‑150 (MQ=60)
TCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAT > SRR19973067.637753/1‑150 (MQ=60)
CAAATTTCTTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTATATAGATTTTAATCAACGAAAGACATCACCATGTTAAATTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGA < SRR19973067.2666888/150‑1 (MQ=60)
GTGTTATTTCTTTTTTCTCCGTTGAACTTTCAGATTCTTTTCTATAGATTTTAATCAACGAAAGACATCACAAAGTGAAATTAAACGAAAGTCACTTGAAAGCGACAACGCCCGACGTCAATTTCATCAGACGAAGGATTGACTTATGCC > SRR19973067.494794/1‑150 (MQ=60)
TTTTTTTTCTTTTTTCTCCGTTGAACTTTCAGTTTATTTTCTATCGATTTTAATCACCGAAAGACAACACCCAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCA < SRR19973067.875778/150‑1 (MQ=60)
TCTTTTTTCTCCTTTTAACTTTCTTTTTCTTTTCTATACATTTTAAAAAACTAAACACAACACCAAGTTAAATGAAACTAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATT < SRR19973067.2473075/150‑1 (MQ=60)
TCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATT > SRR19973067.2733250/1‑150 (MQ=60)
TCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATT < SRR19973067.891607/150‑1 (MQ=60)
TCTTTTGTCTCCGTTTAACTTTCATTTTCTTTTCTATAGATTTTAATCAACGAAAGACAACACAAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATT < SRR19973067.3147494/150‑1 (MQ=60)
CTTTTTTCTCCTTTGAACTTTCATTTTCTTTTCTATAGATTTTAAACAACGAAAGACATCACCAAGTGAAATTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTA < SRR19973067.1447528/150‑1 (MQ=60)
CTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTA > SRR19973067.3560681/1‑150 (MQ=60)
CTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAACGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTA > SRR19973067.1534609/1‑150 (MQ=60)
TTTTTTCTCCTTTTAACTTTCTGTTTCTTTTCTTTATTTTTTAAACAACTAAAGAAAACACCAAGTTAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTAC < SRR19973067.3431475/150‑1 (MQ=60)
TTTTTTCTCCTTTGAAATTTCAGTTTCTTTTATATAGATTTTAATAAACGAAAGACATCCCCAAGTTAATTTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTAC < SRR19973067.2580847/150‑1 (MQ=60)
TTTTTCCTCCGTTTAACTTTCTGTTTCTTTTCTATATATTTTAAACAACTAAATACATCACCAAGTTAAATTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTAC < SRR19973067.3431454/150‑1 (MQ=60)
TTTTTCTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGAGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATGGAGTTATGCCAGAACAGTACA > SRR19973067.2211124/1‑150 (MQ=60)
CTCCTTTGAAATTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAATTGAAATGAAACTAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCT < SRR19973067.1975477/150‑1 (MQ=60)
CTCCGTTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCT > SRR19973067.2188618/1‑150 (MQ=60)
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CGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCT > CP009273/3275063‑3275355
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
