Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F368 I0 R1 1472 214.4 7116750 95.9% 6824963 147.9

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCTCTTTCAGCACCGCGAATTTTTTCGCGATCAGTTCGTCAGATTCTTTGTGGTAAGTACGACGTTCAGAGTGACCGATGATGATGTACTGTGCGCCGATGTCTTTCAGCATAGCAGCAGAGGTTTCACCGGTGAATGCGCCGGACAGGT  >  CP009273/4101081‑4101230
                                                                         |                                                                            
GCTCTTTCAGCACCGCGAATTTTTTCGCGATCAGTTCGTCAGACTCTTTGTGGTAAGTACGACGTTCAGAGTGGCCGATGATGATGTACTGTGCGCCGATGTCTTTCAGCATAGCAGCAGAGGTTTCACCGGTGAATGCGCCGGACAGGT  >  SRR19973067.1503567/1‑150 (MQ=60)
GCTCTTTCAGCACCGCGAATTTTTTCGCGATCAGTTCGTCAGACTCTTTGTGGTAAGTACGACGTTCAGAGTGGCCGATGATGATGTACTGTGCGCCGATGTCTTTCAGCATAGCAGCAGAGGTTTCACCGGTGAATGCGCCGGACAGGT  >  SRR19973067.1503621/1‑150 (MQ=60)
                                                                         |                                                                            
GCTCTTTCAGCACCGCGAATTTTTTCGCGATCAGTTCGTCAGATTCTTTGTGGTAAGTACGACGTTCAGAGTGACCGATGATGATGTACTGTGCGCCGATGTCTTTCAGCATAGCAGCAGAGGTTTCACCGGTGAATGCGCCGGACAGGT  >  CP009273/4101081‑4101230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑