Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F42 I0 R1 87 324.4 10965648 95.0% 10417365 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,071,350 G→A 23.7% W181* (TGG→TAG)  yiiD → putative acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,071,3500GA23.7% 780.0 / 253.1 362W181* (TGG→TAG) yiiDputative acetyltransferase
Reads supporting (aligned to +/- strand):  ref base G (132/144);  new base A (38/48);  total (170/192)
Fisher's exact test for biased strand distribution p-value = 6.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 367 total aligned reads displayed.

GTTTTTCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCACTGGCGACGCTCA  >  CP009273/4071201‑4071499
                                                                                                                                                     |                                                                                                                                                     
  ttttCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGt                                                                                                                                                     <  2:624759/150‑1 (MQ=255)
  ttttCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGt                                                                                                                                                     <  2:4266633/150‑1 (MQ=255)
  ttttCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGt                                                                                                                                                     <  2:3433809/150‑1 (MQ=255)
    ttCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTAc                                                                                                                                                   >  1:462026/1‑150 (MQ=255)
    ttCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTAc                                                                                                                                                   <  1:2751679/150‑1 (MQ=255)
    ttCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTAc                                                                                                                                                   <  2:2395971/150‑1 (MQ=255)
     tCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACg                                                                                                                                                  <  2:1190553/150‑1 (MQ=255)
      cGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTACATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGa                                                                                                                                                 >  1:1537495/1‑150 (MQ=255)
         cAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACa                                                                                                                                              <  2:3557074/150‑1 (MQ=255)
         cAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGAGGTACGAACa                                                                                                                                              >  2:2892444/1‑150 (MQ=255)
          aaGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACat                                                                                                                                             <  2:26190/150‑1 (MQ=255)
          aaGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCACCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACat                                                                                                                                             >  1:504053/1‑150 (MQ=255)
            gCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGTGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACatat                                                                                                                                           <  1:1004830/150‑1 (MQ=255)
            gCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACatat                                                                                                                                           <  2:1551019/150‑1 (MQ=255)
             cTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATc                                                                                                                                          <  2:3934862/150‑1 (MQ=255)
                gggTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCg                                                                                                                                       <  1:64270/150‑1 (MQ=255)
                 ggTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGc                                                                                                                                      <  1:3034396/150‑1 (MQ=255)
                  gTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCACCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCt                                                                                                                                     >  1:4160463/1‑150 (MQ=255)
                   tttGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCtt                                                                                                                                    >  1:1327830/1‑150 (MQ=255)
                     tGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAg                                                                                                                                  >  1:1723454/1‑150 (MQ=255)
                     tGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAg                                                                                                                                  >  1:4450324/1‑150 (MQ=255)
                      gTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGt                                                                                                                                 <  2:4773992/150‑1 (MQ=255)
                       ttAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTg                                                                                                                                <  2:5249955/150‑1 (MQ=255)
                         aaTCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGaa                                                                                                                              >  2:2653124/1‑150 (MQ=255)
                              gggAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAAt                                                                                                                         <  2:1672452/150‑1 (MQ=255)
                               ggAGAAATCACCACGCCAACCACCACGCCGATTCTCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACAATCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATg                                                                                                                        >  1:2260150/1‑150 (MQ=255)
                                  gaAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGc                                                                                                                     <  1:5089008/150‑1 (MQ=255)
                                   aaaTCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCg                                                                                                                    >  2:5342492/1‑150 (MQ=255)
                                    aaTCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACCTTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGt                                                                                                                   >  2:4454710/1‑150 (MQ=255)
                                           acGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCAtt                                                                                                            <  2:5323997/150‑1 (MQ=255)
                                             gCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCTCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCa                                                                                                          >  1:2521005/1‑150 (MQ=255)
                                               cAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGc                                                                                                        <  2:3275562/150‑1 (MQ=255)
                                                aaCCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCa                                                                                                       <  1:3803880/150‑1 (MQ=255)
                                                aaCCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCa                                                                                                       >  1:2873130/1‑150 (MQ=255)
                                                 accaccACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCaa                                                                                                      >  2:1112832/1‑150 (MQ=255)
                                                    accacGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAatat                                                                                                   >  2:2213413/1‑150 (MQ=255)
                                                    accacGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAatat                                                                                                   >  2:2094866/1‑150 (MQ=255)
                                                     ccacGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAAtata                                                                                                  <  2:363149/150‑1 (MQ=255)
                                                      cacGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATAc                                                                                                 <  1:4692742/150‑1 (MQ=255)
                                                         gCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCgg                                                                                              <  2:1858399/150‑1 (MQ=255)
                                                           cGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGc                                                                                            >  1:2006173/1‑150 (MQ=255)
                                                           cGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGc                                                                                            >  1:3133960/1‑150 (MQ=255)
                                                            gATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCa                                                                                           <  2:3113835/150‑1 (MQ=255)
                                                            gATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCa                                                                                           <  2:5059457/150‑1 (MQ=255)
                                                            gATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCa                                                                                           <  2:1013426/150‑1 (MQ=255)
                                                                 gCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAAt                                                                                      >  1:2970090/1‑150 (MQ=255)
                                                                    aTTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTa                                                                                   <  1:4816919/150‑1 (MQ=255)
                                                                    aTTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTa                                                                                   <  1:140715/150‑1 (MQ=255)
                                                                      tttttGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATc                                                                                 >  1:3412808/1‑150 (MQ=255)
                                                                        tttGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCAc                                                                               >  1:1623960/1‑150 (MQ=255)
                                                                         ttGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACt                                                                              <  2:201546/150‑1 (MQ=255)
                                                                          tgatgaTTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTa                                                                             >  2:1374811/1‑150 (MQ=255)
                                                                           gatgatTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTAc                                                                            <  2:668687/150‑1 (MQ=255)
                                                                            atgatTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTAcc                                                                           >  2:3533725/1‑150 (MQ=255)
                                                                             tgatTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATCTCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCa                                                                          <  2:141209/150‑1 (MQ=255)
                                                                              gcttAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCAt                                                                         <  2:1765163/148‑1 (MQ=255)
                                                                                 tAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGcc                                                                      <  1:4841695/150‑1 (MQ=255)
                                                                                  aaGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCa                                                                     >  1:3333428/1‑150 (MQ=255)
                                                                                   aGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAg                                                                    >  1:3659390/1‑150 (MQ=255)
                                                                                    gCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGa                                                                   >  1:2386977/1‑150 (MQ=255)
                                                                                     cccGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGaa                                                                  >  2:419587/1‑150 (MQ=255)
                                                                                     cccGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGaa                                                                  >  2:2965973/1‑150 (MQ=255)
                                                                                       cGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAATATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAAc                                                                >  2:5166081/1‑150 (MQ=255)
                                                                                       cGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAAc                                                                <  1:5258844/150‑1 (MQ=255)
                                                                                        gTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAAcc                                                               >  1:126088/1‑150 (MQ=255)
                                                                                        gTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAAcc                                                               >  2:400846/1‑150 (MQ=255)
                                                                                        gTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAAcc                                                               <  2:3909822/150‑1 (MQ=255)
                                                                                        gTCGCCACTCTGGAGGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAAcc                                                               <  2:3300622/150‑1 (MQ=255)
                                                                                         tCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTATCATGCCAGAAACCg                                                              <  2:169817/150‑1 (MQ=255)
                                                                                         tCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCg                                                              <  2:1452059/150‑1 (MQ=255)
                                                                                         tCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCg                                                              <  1:5113994/150‑1 (MQ=255)
                                                                                         tCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCg                                                              <  1:4330504/150‑1 (MQ=255)
                                                                                          cGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAACCCgg                                                             >  2:5240419/1‑150 (MQ=255)
                                                                                               ctctGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATc                                                        >  2:3189617/1‑150 (MQ=255)
                                                                                                     aTGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATc                                                  <  2:4598768/150‑1 (MQ=255)
                                                                                                      tGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATcc                                                 >  2:2564346/1‑150 (MQ=255)
                                                                                                         cATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCa                                              <  1:4132110/150‑1 (MQ=255)
                                                                                                             cTGCATCGCGGCGTCTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCAt                                          <  1:5204325/150‑1 (MQ=255)
                                                                                                             cTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCAt                                          >  1:5337654/1‑150 (MQ=255)
                                                                                                              tGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTCCGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCACTATACCGGGCAAAAATGTATCACTACCATGCCAGACACCGGCAATCAGAATCCGCACCATa                                         >  1:2959408/1‑150 (MQ=255)
                                                                                                                cATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACg                                       >  1:1190499/1‑150 (MQ=255)
                                                                                                                 aTCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGc                                      >  1:827584/1‑150 (MQ=255)
                                                                                                                  tCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCt                                     <  2:1525128/150‑1 (MQ=255)
                                                                                                                      ggcgACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGttt                                 >  2:563281/1‑150 (MQ=255)
                                                                                                                       gcgACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCACTCAGAATCCGCACCATACGCTGTTTg                                >  2:164387/1‑150 (MQ=255)
                                                                                                                       gcgACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTg                                >  2:3808063/1‑150 (MQ=255)
                                                                                                                         gACTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGcc                              >  1:4007264/1‑150 (MQ=255)
                                                                                                                          aCTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCg                             <  2:3007766/150‑1 (MQ=255)
                                                                                                                          aCTGGTGCGCGCAGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCg                             >  1:3344896/1‑150 (MQ=255)
                                                                                                                               tGCGCGCAGCTGCAACAGGCGTGGTACGAACATCTCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGt                        <  2:4971518/150‑1 (MQ=255)
                                                                                                                               tGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGt                        <  1:5018224/150‑1 (MQ=255)
                                                                                                                                gcgcgcAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGtt                       <  2:4819933/150‑1 (MQ=255)
                                                                                                                                    gcAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTAtt                   <  1:265319/150‑1 (MQ=255)
                                                                                                                                      aGCTGCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATtct                 >  2:759630/1‑150 (MQ=255)
                                                                                                                                        cTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCa               >  1:5013755/1‑150 (MQ=255)
                                                                                                                                        cTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCa               >  1:1059897/1‑150 (MQ=255)
                                                                                                                                          gCAACAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCACt             <  1:4717500/150‑1 (MQ=255)
                                                                                                                                            aaCAGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCAAACGCTGTTTGCCGGGAGTTTATTCTCACTgg           >  1:2141604/1‑150 (MQ=255)
                                                                                                                                               aGGCGTAGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCACTGGCGa        >  1:694481/1‑150 (MQ=255)
                                                                                                                                                     ggTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCACTGGCGACGCTCa  >  2:4107643/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTTTTTCGCCAAGCTGGGGTTTGTTAATCAGGGAGAAATCACCACGCCAACCACCACGCCGATTCGCCATTTTTTGATGATTAAGCCCGTCGCCACTCTGGATGACATTCTGCATCGCGGCGACTGGTGCGCGCAGCTGCAACAGGCGTGGTACGAACATATCCCGCTTAGTGAAAAAATGGGCGTGCGCATTCAGCAATATACCGGGCAAAAATTTATCACTACCATGCCAGAAACCGGCAATCAGAATCCGCACCATACGCTGTTTGCCGGGAGTTTATTCTCACTGGCGACGCTCA  >  CP009273/4071201‑4071499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A