Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F434 I0 R1
|
1130 |
215.9 |
7031662 |
97.1% |
6827743 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,248,657 |
C→A |
100% |
K3N (AAG→AAT) |
rihB ← |
ribonucleoside hydrolase 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,248,657 | 0 | C | A | 97.9%
| 592.5
/ 3.2
| 193 | K3N (AAG→AAT) | rihB | ribonucleoside hydrolase 2 |
| Reads supporting (aligned to +/- strand): ref base C (0/4); new base A (88/100); total (88/105) |
| Fisher's exact test for biased strand distribution p-value = 1.26e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 195 total aligned reads displayed.
TCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTCTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAG > CP009273/2248512‑2248801
|
tCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTAtt < 1:936393/148‑1 (MQ=255)
aGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTAtttt > 2:3039838/1‑148 (MQ=255)
ggCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTc < 1:1120984/148‑1 (MQ=255)
ccATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCa < 2:2525624/148‑1 (MQ=255)
ccATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCa > 2:3125939/1‑148 (MQ=255)
attaattaATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCAtt < 1:1985941/148‑1 (MQ=255)
attaattaATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCAtt < 1:1666720/148‑1 (MQ=255)
ttaattaaTGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTg < 1:1042590/148‑1 (MQ=255)
ttaattaaTGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTg < 1:1042576/148‑1 (MQ=255)
ttaattaaTGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTg > 1:1597661/1‑148 (MQ=255)
taattactGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGt < 1:1908278/148‑1 (MQ=255)
taattaatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGt > 2:1399541/1‑148 (MQ=255)
aattaatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGtt < 1:1257383/148‑1 (MQ=255)
attaatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGttt < 1:1565135/148‑1 (MQ=255)
ttaatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTa < 1:935460/148‑1 (MQ=255)
ttaatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTa < 1:935385/148‑1 (MQ=255)
taatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAt > 1:1809930/1‑148 (MQ=255)
taatGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAt > 2:1226937/1‑148 (MQ=255)
atGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAttt > 2:47272/1‑148 (MQ=255)
tGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTc < 2:2995298/148‑1 (MQ=255)
tATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTg < 2:68874/148‑1 (MQ=255)
tATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTg < 1:2888963/148‑1 (MQ=255)
aTCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGt > 1:503788/1‑148 (MQ=255)
aTCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGt < 1:245896/148‑1 (MQ=255)
cAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGttt < 2:1913104/148‑1 (MQ=255)
aaGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTc > 1:2579683/1‑148 (MQ=255)
aaGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTc < 2:220030/148‑1 (MQ=255)
aGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCAGTGTTTATTTCCTCTGTTTcc > 2:3436148/1‑148 (MQ=255)
tCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGtt > 2:2583255/1‑148 (MQ=255)
tCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGtt > 2:825149/1‑148 (MQ=255)
cTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTg > 2:2881341/1‑148 (MQ=255)
cTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTg > 2:2881627/1‑148 (MQ=255)
cTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTg > 1:2997360/1‑148 (MQ=255)
ttACCCGCTACTATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGtt < 1:2328155/148‑1 (MQ=255)
aaTAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTTTTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTAc < 2:1729469/148‑1 (MQ=255)
aaTAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTAc < 1:2166570/148‑1 (MQ=255)
aaTAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTAc > 2:3425462/1‑148 (MQ=255)
tAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAg > 2:3296649/1‑148 (MQ=255)
tAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAg > 2:3335733/1‑148 (MQ=255)
tGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGa > 2:1747242/1‑148 (MQ=255)
tGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGa > 2:1747195/1‑148 (MQ=255)
cTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGaaaa < 1:444370/148‑1 (MQ=255)
taaATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCACAGAAAATTCg > 2:2278287/1‑148 (MQ=255)
aaaTCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGa < 1:2269668/148‑1 (MQ=255)
tCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCg > 2:550460/1‑148 (MQ=255)
cTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCgg > 1:3127489/1‑148 (MQ=255)
aTTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGc > 2:2149879/1‑148 (MQ=255)
aTTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGc > 2:1593914/1‑148 (MQ=255)
gCCGGATGTTTCGCCGCCATCATTATAGCAATCGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCga < 2:2475516/148‑1 (MQ=255)
gATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCgatgat < 2:1332103/148‑1 (MQ=255)
gATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCgatgat < 2:2699630/148‑1 (MQ=255)
gATGTTTCGCCGCCATCATTATAGCAATAGCATCATCAGGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCgatgat < 2:402428/148‑1 (MQ=255)
aTGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGAtt > 2:256003/1‑148 (MQ=255)
gTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATATTTTTTCTATTTTCCATTGTTTTTTTCCTCTGTTGCCAGTTGCGTTATTTTTTCTACAGAAAAGAAAATTCGACCGGGCCGATGATTGa < 1:27694/148‑1 (MQ=255)
gTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACCGCAAAGAAAATTCGACCGGGCCGATGATTGa < 2:2255421/148‑1 (MQ=255)
gTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGa > 1:3347234/1‑148 (MQ=255)
gTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGa < 2:201118/148‑1 (MQ=255)
gTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATGTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGa < 2:2767540/148‑1 (MQ=255)
tttCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGaa < 2:1199636/148‑1 (MQ=255)
ttCGCCGCCATCATTAGAGCATTAGCAACATCATGACCCGGCTCACAATCCAGAATAATTTTTCTATTTACCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAAt < 2:3462448/148‑1 (MQ=255)
cgccgcCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCt < 1:877902/148‑1 (MQ=255)
ccATCATTATAGCAATAGCATCATCATGACCCGTATCAAAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaaca < 1:683969/148‑1 (MQ=255)
ccATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaaca > 2:2134683/1‑148 (MQ=255)
ccATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaaca > 2:586076/1‑148 (MQ=255)
catcatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaa < 1:3039838/148‑1 (MQ=255)
catcatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaa < 1:3125939/148‑1 (MQ=255)
catcatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaa > 1:3209691/1‑148 (MQ=255)
atcatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaac < 2:2783081/148‑1 (MQ=255)
atcatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaac > 1:994226/1‑148 (MQ=255)
ataatTATAGCAATATCATCATCCTGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaac < 2:2783077/145‑1 (MQ=255)
aacatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCAGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTaacaac < 2:2455521/146‑1 (MQ=255)
tcatTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAacaaca > 2:2180438/1‑148 (MQ=255)
gcaatagcaTCATCATGACCCGGATCACAATCCATAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGCAAATAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGcgtacgt < 1:3333724/148‑1 (MQ=255)
atatcaTAATCATGACCCGGATCACAATCAAGAATAATTTTTCTATTTTCAATTGTTTATTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATg < 2:2408894/148‑1 (MQ=255)
tagcaTCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGc < 2:96191/148‑1 (MQ=255)
agcaTCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCt > 2:2840206/1‑148 (MQ=255)
catcatcatGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCGGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTATCAACAGCGTACGTATGCTaa > 1:2561320/1‑148 (MQ=255)
catcatcatGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTaa < 2:1613569/148‑1 (MQ=255)
atcatcatGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTaaa > 2:2700896/1‑148 (MQ=255)
catcatGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGGGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAata < 1:1399541/148‑1 (MQ=255)
catcatGACCCGGATCACAATCCAGAATAATTTTTATATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAata < 1:282563/148‑1 (MQ=255)
tcatGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATg < 2:3347234/148‑1 (MQ=255)
cccGGATAACATTCAATAATTTTTTTACTATTTTCCATTGTTTTTTTCCTCTTTTTCCAGTTGATTTATTTTTTCTACACAAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAAt < 1:2396782/148‑1 (MQ=255)
ccGGATCACACTCCAGAATAATTTTTCTCTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAAtc < 2:2706204/148‑1 (MQ=255)
tCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGAt > 2:1902352/1‑148 (MQ=255)
tCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGAGGAt > 2:1900216/1‑148 (MQ=255)
ccAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTAGACCGGGCCGATGATTTAATCTTAACAACATCGGACGTATTCTAAATAAGAGAAAAATCATATCGGATa > 1:1203945/1‑148 (MQ=255)
cAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATaa > 2:15275/1‑148 (MQ=255)
aGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATaaa > 2:1706753/1‑148 (MQ=255)
gAATAATTTTTCTATTTTCCATTGTTTTTTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGAAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAAc < 1:1809068/148‑1 (MQ=255)
gAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAAc > 1:513626/1‑148 (MQ=255)
aataatTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACa > 2:366439/1‑148 (MQ=255)
aataatTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACa < 2:729545/148‑1 (MQ=255)
ataatTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACCGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACAt < 1:2835153/148‑1 (MQ=255)
taatTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATc > 1:1746765/1‑148 (MQ=255)
taatTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATc > 1:3484508/1‑148 (MQ=255)
aatTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCg < 1:714153/148‑1 (MQ=255)
tttttCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGAGTGAATCTTAAAAACAGCGTACGTATGCTAAATATTAGAAATATCATAGCGGATAAACAACGTg > 1:951158/1‑148 (MQ=255)
tgtctaTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTgaa < 2:2443820/146‑1 (MQ=255)
ttCTTTTTTCCAGTGTTTATTTCGTCTGTTTCCATTTGCGTTTTTTTTTCTACAGCAAAGAAATTTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTgaaa < 1:2368065/148‑1 (MQ=255)
|
TCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTCTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAG > CP009273/2248512‑2248801
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACATTCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTCTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATC > CP009273/2248508‑2248806
|
ACATTCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTA < SRR19973065.2426723/150‑1 (MQ=60)
ATTCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATT > SRR19973065.1207299/1‑150 (MQ=60)
TCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTT < SRR19973065.945522/150‑1 (MQ=60)
TCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTT < SRR19973065.942580/150‑1 (MQ=60)
GGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCA < SRR19973065.1128290/150‑1 (MQ=60)
CCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATT < SRR19973065.2418128/150‑1 (MQ=60)
CCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATT < SRR19973065.3415412/150‑1 (MQ=60)
CATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTG > SRR19973065.1608332/1‑150 (MQ=60)
ATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGT < SRR19973065.1998834/150‑1 (MQ=60)
ATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGT < SRR19973065.1677874/150‑1 (MQ=60)
TTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTT < SRR19973065.1049468/150‑1 (MQ=60)
TTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTT < SRR19973065.1049482/150‑1 (MQ=60)
TAATTACTGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTT < SRR19973065.1920814/150‑1 (MQ=60)
AATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTA < SRR19973065.1265664/150‑1 (MQ=60)
ATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAT < SRR19973065.1575536/150‑1 (MQ=60)
ATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAT > SRR19973065.1821942/1‑150 (MQ=60)
ATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAT > SRR19973065.1821839/1‑150 (MQ=60)
ATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTAT > SRR19973065.3068188/1‑150 (MQ=60)
TTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATT < SRR19973065.941639/150‑1 (MQ=60)
TTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATT < SRR19973065.941562/150‑1 (MQ=60)
TTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTG < SRR19973065.3032945/150‑1 (MQ=60)
TTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGT > SRR19973065.507151/1‑150 (MQ=60)
TTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGT > SRR19973065.507682/1‑150 (MQ=60)
TATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTT < SRR19973065.2906620/150‑1 (MQ=60)
ATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTT < SRR19973065.247637/150‑1 (MQ=60)
TCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTC > SRR19973065.2595767/1‑150 (MQ=60)
GTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTG > SRR19973065.3015720/1‑150 (MQ=60)
TTACCCGCTACTATAGTGATGCCTTATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTAT < SRR19973065.2342719/150‑1 (MQ=60)
TTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTAT < SRR19973065.2342706/150‑1 (MQ=60)
CAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACA < SRR19973065.28578/150‑1 (MQ=60)
AATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTGTACAG > SRR19973065.1622539/1‑150 (MQ=60)
AATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAG < SRR19973065.2179454/150‑1 (MQ=60)
AATAGTGATGCCTAATAAATCTAGTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAG < SRR19973065.2180489/150‑1 (MQ=60)
CTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATT < SRR19973065.447446/150‑1 (MQ=60)
ATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGA < SRR19973065.2499220/150‑1 (MQ=60)
AAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACC < SRR19973065.2284002/150‑1 (MQ=60)
AATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCG < SRR19973065.3145610/150‑1 (MQ=60)
ATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGG > SRR19973065.3146529/1‑150 (MQ=60)
ATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCAAGTTGCGTTATTTTTTCTACAGAAAAGAAAATTCTAACGG > SRR19973065.586003/1‑150 (MQ=60)
CTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAATAAAATTAGACCGGGC > SRR19973065.97087/1‑150 (MQ=60)
TGCCGGATGTTTCGCCGCCCACATTATAGAAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCTGTTGCTTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGAT < SRR19973065.2751385/150‑1 (MQ=60)
CCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCATAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAAGTCGACCGGGCCGATGA < SRR19973065.699176/150‑1 (MQ=60)
ATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGA > SRR19973065.3367683/1‑150 (MQ=60)
GTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATATTTTTTCTATTTTCCATTGTTTTTTTCCTCTGTTGCCAGTTGCGTTATTTTTTCTACAGAAAAGAAAATTCGACCGGGCCGATGATTGAAT < SRR19973065.28055/150‑1 (MQ=60)
GTTTCGCCGCCATCATTATAGCAATAGAATCATCATGACCCGGATCACAATCCAGAATAATTTTTATATTTTCCATTTTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAAT < SRR19973065.1817103/150‑1 (MQ=60)
CGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTA < SRR19973065.883501/150‑1 (MQ=60)
GCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTCTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAA < SRR19973065.1939818/150‑1 (MQ=60)
GCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAA > SRR19973065.3229003/1‑150 (MQ=60)
CCATCATTATAGCAATAGCATCATCATGACCCGTATCAAAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAAC < SRR19973065.688518/150‑1 (MQ=60)
CCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAAC > SRR19973065.1000836/1‑150 (MQ=60)
CATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACA < SRR19973065.3144972/150‑1 (MQ=60)
CATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACA < SRR19973065.3058448/150‑1 (MQ=60)
TCATTATAGCAATAGCATCATCATGACCCGTATCACAATCCATAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGC < SRR19973065.3316727/150‑1 (MQ=60)
AGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTA > SRR19973065.931650/1‑150 (MQ=60)
GCAATAGCATCATCATGACCCGGATCACAATCCATAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGCAAATAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTAT < SRR19973065.3354079/150‑1 (MQ=60)
AGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCGGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTATCAACAGCGTACGTATGCTAA > SRR19973065.2577333/1‑150 (MQ=60)
AGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAA > SRR19973065.877856/1‑150 (MQ=60)
ATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGGTTGAATCTTAACAAAAGCGTACGTATGCTAAATA > SRR19973065.1603982/1‑150 (MQ=60)
TCATCATGACCCGTAACACAATCAAGAATAATTTTTCTATTTTCCATTTTTTATTTCCTCTGTTTCCTGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATAT < SRR19973065.2389571/150‑1 (MQ=60)
CATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGGGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATG < SRR19973065.1408721/150‑1 (MQ=60)
CATCATGACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGTTTGAATCTTAACAAAAGCGTACCTATGCTAAATATG > SRR19973065.1224572/1‑150 (MQ=60)
CATCATGACCCGGATCACAATCCAGAATAATTTTTATATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATG < SRR19973065.284431/150‑1 (MQ=60)
GACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGTGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAAT < SRR19973065.1064269/150‑1 (MQ=60)
ACCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATC > SRR19973065.1741934/1‑150 (MQ=60)
CCCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGAAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCT < SRR19973065.47814/150‑1 (MQ=60)
CCGGATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATGTCCTCTGTTGCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTC < SRR19973065.942361/150‑1 (MQ=60)
ATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGTTTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAG > SRR19973065.1401237/1‑150 (MQ=60)
ATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGATAAATCTCATAG > SRR19973065.2890251/1‑150 (MQ=60)
ATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAG > SRR19973065.2910278/1‑150 (MQ=60)
ATCACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTATACAGCAAAGTAAATTCGACCGGGCCGATGATTTAATCTTTAAAAAAGCGTACGTATGCTAAATATTAGAAATataatat > SRR19973065.1515606/1‑143 (MQ=60)
ACAATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAGTATGAGAAATCTCATAGCGG > SRR19973065.3225951/1‑150 (MQ=60)
ACTCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGAT < SRR19973065.1821739/150‑1 (MQ=60)
AATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGAT < SRR19973065.3356095/150‑1 (MQ=60)
ATCCAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTAGACCGGGCCGATGATTTAATCTTAACAACATCGGACGTATTCTAAATAAGAGAAAAATCATATCGGATA > SRR19973065.1211676/1‑150 (MQ=60)
CAGAATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAAC > SRR19973065.517027/1‑150 (MQ=60)
GAATAATTTTTCTATTTTCCATTGTTTTTTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGAAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACAT < SRR19973065.1820974/150‑1 (MQ=60)
AATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATC > SRR19973065.3505707/1‑150 (MQ=60)
AATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATATAATAGCGGATAAACATC > SRR19973065.1758277/1‑150 (MQ=60)
AATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTATACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATATAGGATAAACATC > SRR19973065.3505716/1‑150 (MQ=60)
ATAATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACCGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCG < SRR19973065.2852615/150‑1 (MQ=60)
ATAATTTTACTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCG < SRR19973065.2852385/150‑1 (MQ=60)
AATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTG < SRR19973065.718930/150‑1 (MQ=60)
AATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTG < SRR19973065.2193781/150‑1 (MQ=60)
AATTTTTCTATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGAGTGAATCTTAAAAACAGCGTACGTATGCTAAATATTAGAAATATCATAGCGGATAAACAACGTG > SRR19973065.957445/1‑150 (MQ=60)
TTCTTTTTTCCAGTGTTTATTTCGTCTGTTTCCATTTGCGTTTTTTTTTCTACAGCAAAGAAATTTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGA < SRR19973065.2382823/150‑1 (MQ=60)
TTCTATTTTCCATTTTTTATTTCCTCTGTTTCCAGTTGCTTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGA < SRR19973065.2382022/150‑1 (MQ=60)
ATTTTCCTTTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATC < SRR19973065.2163705/150‑1 (MQ=60)
ATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGTATCTTAAAAAAAGCGTACGTATTCTAAATATTAGAAATCTAATAGCGGATAAACATAGTGAAATAAATA > SRR19973065.2973721/1‑150 (MQ=60)
ATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATC < SRR19973065.1301922/150‑1 (MQ=60)
ATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATC > SRR19973065.1093950/1‑150 (MQ=60)
ATTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATA > SRR19973065.2928211/1‑150 (MQ=60)
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ACATTCAGGCCATTAATTAATGTTTTATCAAGCGTCTGATTACCCGCTACAATAGTGATGCCTAATAAATCTATTGCCGGATGTTTCGCCGCCATCATTATAGCAATAGCATCATCATGACCCGGATCACAATCCAGAATAATTTTTCTCTTTTCCATTGTTTATTTCCTCTGTTTCCAGTTGCGTTATTTTTTCTACAGCAAAGAAAATTCGACCGGGCCGATGATTGAATCTTAACAACAGCGTACGTATGCTAAATATGAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATC > CP009273/2248508‑2248806
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
