Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,007,405 A→T 41.1% L65* (TTG→TAG)  yqeB ← XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,007,4050AT41.1% 184.4 / inf 255L65* (TTG→TAG) yqeBXdhC‑CoxI family protein with NAD(P)‑binding Rossman fold
Reads supporting (aligned to +/- strand):  ref base A (66/84);  new base T (51/54);  total (117/138)
Fisher's exact test for biased strand distribution p-value = 5.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01

Only 100 of 255 total aligned reads displayed.

ACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCAAACGG  >  CP009273/3007258‑3007553
                                                                                                                                                   |                                                                                                                                                    
aCATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTAt                                                                                                                                                    <  1:1858668/150‑1 (MQ=255)
aCATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAAt                                                                                                                                                    <  1:2501290/150‑1 (MQ=255)
     ccccGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTg                                                                                                                                               <  2:1035132/150‑1 (MQ=255)
      cccGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGa                                                                                                                                              >  2:2938192/1‑150 (MQ=255)
       ccGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGaa                                                                                                                                             >  1:4433834/1‑150 (MQ=255)
        cgcgCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAg                                                                                                                                            >  1:4382016/1‑150 (MQ=255)
        cgcgCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAg                                                                                                                                            <  1:1707588/150‑1 (MQ=255)
         gcgcCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGc                                                                                                                                           <  1:2796781/150‑1 (MQ=255)
             cAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGAct                                                                                                                                       >  2:1021697/1‑150 (MQ=255)
                  aaCACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCa                                                                                                                                  >  1:2052369/1‑150 (MQ=255)
                    cacCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAAt                                                                                                                                >  2:1766419/1‑150 (MQ=255)
                     acCAGACGTGGACGCATACCATGGACGCTTATAAATACTGACTTTGCACCTCCACAATCTGACCCGACAGCATCCGCACCTTTACGAGCCATACGTCCATGTAATAATCGCGGATTACTTTCCTGCAATGCCTGAAGCGACTCTTCAATc                                                                                                                               <  1:131514/150‑1 (MQ=255)
                            gTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTcc                                                                                                                        >  2:1871786/1‑150 (MQ=255)
                            gTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTcc                                                                                                                        <  2:4507153/150‑1 (MQ=255)
                               gACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCt                                                                                                                     >  2:1950793/1‑150 (MQ=255)
                                    aTACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAAcc                                                                                                                >  1:368223/1‑150 (MQ=255)
                                      aCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCAt                                                                                                              >  2:430977/1‑150 (MQ=255)
                                      aCCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCAt                                                                                                              >  2:4202846/1‑150 (MQ=255)
                                       ccATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCTTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCAtt                                                                                                             <  2:3346740/150‑1 (MQ=255)
                                         ttGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGATTATTCGCGGGTTAGGTTCCTGCATTGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTcc                                                                                                           <  2:3500851/149‑1 (MQ=255)
                                         aTGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTcc                                                                                                           <  1:3534107/150‑1 (MQ=255)
                                           ggACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGTAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGc                                                                                                         <  1:2426149/150‑1 (MQ=255)
                                           ggACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGc                                                                                                         >  2:2423214/1‑150 (MQ=255)
                                               gCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGccacc                                                                                                     <  2:4479899/150‑1 (MQ=255)
                                                cTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGccacca                                                                                                    >  1:2152338/1‑150 (MQ=255)
                                                cTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGccacca                                                                                                    >  1:335869/1‑150 (MQ=255)
                                                  gATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAAt                                                                                                  >  1:342847/1‑150 (MQ=255)
                                                   aTAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAAtt                                                                                                 >  1:1077087/1‑150 (MQ=255)
                                                    tAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAAACGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCCATCACCTTCCGCTCAACCATTCCGCCACCAATTg                                                                                                >  1:1582125/1‑150 (MQ=255)
                                                     aaaTACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCAATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGt                                                                                               <  1:4585460/150‑1 (MQ=255)
                                                        tACTGACATTGCACCTCCACAATCTGACCCGCCTGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCTGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTAcc                                                                                            <  2:305823/150‑1 (MQ=255)
                                                          cTGACATTGCACCTCCACAATCTTACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACcga                                                                                          <  1:750595/150‑1 (MQ=255)
                                                          cTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACcga                                                                                          >  2:285251/1‑150 (MQ=255)
                                                          cTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACcga                                                                                          >  2:3278460/1‑150 (MQ=255)
                                                              cATTGCACCTCCAAAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATTCGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGAt                                                                                      <  2:4018651/150‑1 (MQ=255)
                                                               tttGCACGTCCACATTCTGACCCTACAGAATCCGCACGTTTACGAGCCATACGTCATTGTAATAATCGGGGTTTTGGTTCCTGAAATGCATGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATa                                                                                     <  1:870657/149‑1 (MQ=255)
                                                               aTTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATa                                                                                     >  1:40162/1‑150 (MQ=255)
                                                                ttGCACCTCCACACTCTGCCCCGACACCATCCGCACGGTTACGCGCCAACCGTCACTGTAATAATCGCGGATTACGTTCCTGCATTGCCTCACGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAg                                                                                    <  1:32214/150‑1 (MQ=255)
                                                                 tGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGa                                                                                   <  2:1889930/150‑1 (MQ=255)
                                                                  gCACCTCCACAATCTGACCCTACAGCATCCGCACCGTTACGAGCCATAGGTCCTTGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGaa                                                                                  <  1:1483570/150‑1 (MQ=255)
                                                                   cACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAAc                                                                                 >  1:3530074/1‑150 (MQ=255)
                                                                   cACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAAc                                                                                 >  1:718131/1‑150 (MQ=255)
                                                                       tccaacaTCTGACCCGACAGCATCCTCACCGTTACGAGCCATACGTCCTTGGAATAATCGCGGCTTACGTTCCTGCATGGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATc                                                                             <  2:3294362/144‑1 (MQ=255)
                                                                       tCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGTAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATc                                                                             <  2:1341420/150‑1 (MQ=255)
                                                                       tCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGTAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATc                                                                             <  2:2744932/150‑1 (MQ=255)
                                                                         cacaATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCgg                                                                           >  1:290659/1‑150 (MQ=255)
                                                                             aTCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGgcgcg                                                                       >  2:1429435/1‑150 (MQ=255)
                                                                              tCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGgcgcgc                                                                      >  2:4603094/1‑150 (MQ=255)
                                                                                 gACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACt                                                                   >  1:1101544/1‑150 (MQ=255)
                                                                                  aCCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTa                                                                  >  1:2629902/1‑150 (MQ=255)
                                                                                  aCCCGACAGCATCCGCACCGTTACGACCAATACGTCAATGGAATAAGCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTa                                                                  <  1:4413053/150‑1 (MQ=255)
                                                                                     cGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACa                                                               <  2:473475/150‑1 (MQ=255)
                                                                                       aCAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACAtt                                                             <  2:1085799/150‑1 (MQ=255)
                                                                                        cAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTCTGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACAttt                                                            >  2:771031/1‑150 (MQ=255)
                                                                                         aGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGGTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTtg                                                           <  1:3839419/150‑1 (MQ=255)
                                                                                          gCATCCGCACCGTTACGAGCCATACGTCAATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTtgt                                                          <  2:2463654/150‑1 (MQ=255)
                                                                                           cATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTtgtg                                                         >  1:3898337/1‑150 (MQ=255)
                                                                                            aTCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGc                                                        >  1:4198203/1‑150 (MQ=255)
                                                                                            aTCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGc                                                        >  1:1195204/1‑150 (MQ=255)
                                                                                                gCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGaa                                                    >  1:2825098/1‑150 (MQ=255)
                                                                                                 cacgtttACGAGCCATACGTCCATGTAATAATCGCGGCTTACGTTCCTGCTATGCCTTAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAAt                                                   <  1:3166066/145‑1 (MQ=255)
                                                                                                  aCCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATg                                                  <  2:1571033/150‑1 (MQ=255)
                                                                                                   ccGTTACGAGCCATACGTCCATGTAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATgg                                                 <  1:3251737/150‑1 (MQ=255)
                                                                                                   ccGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATgg                                                 <  2:1668553/150‑1 (MQ=255)
                                                                                                   ccGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATgg                                                 <  1:3074707/150‑1 (MQ=255)
                                                                                                    cGTTTCGTGCCTTACGTCCTTGGAATAATCGGGGCTTACGTTCCTGCTATGCCTGAAGCGACTATTCAATCACCTTCCGCTCAACCATTACGCAACCAATTGTACCGTCGATAGAACCATCGGCGCGCTCTAACATTTGTGCATAATGGc                                                <  2:3674650/150‑1 (MQ=255)
                                                                                                     gTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCg                                               <  2:816475/150‑1 (MQ=255)
                                                                                                      ttACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCgg                                              <  2:3404669/150‑1 (MQ=255)
                                                                                                            gCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTc                                        <  2:2995730/150‑1 (MQ=255)
                                                                                                             ccATACGTCCATGGAATAATCGCGGCTAACGTTCCTGCAATGCCTCAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCg                                       <  1:3575419/150‑1 (MQ=255)
                                                                                                               aTACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAg                                     >  2:2142879/1‑150 (MQ=255)
                                                                                                               aTACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAg                                     >  1:46798/1‑150 (MQ=255)
                                                                                                                 aCGTCCTTGGAATAACCGCGGCTTACGTTCCTGCTATGCCGGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGcc                                   <  1:2745240/150‑1 (MQ=255)
                                                                                                                   gTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTc                                 <  1:1920143/150‑1 (MQ=255)
                                                                                                                    tCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCg                                >  2:4412393/1‑150 (MQ=255)
                                                                                                                    tCCATGGAATAATCGCGGCTTACGGTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCg                                <  2:2069639/150‑1 (MQ=255)
                                                                                                                     ccaggtaataatCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCgg                               <  1:3718412/144‑1 (MQ=255)
                                                                                                                       aTGTAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCt                             <  1:907461/150‑1 (MQ=255)
                                                                                                                        tGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTa                            >  1:820041/1‑150 (MQ=255)
                                                                                                                        tGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTa                            >  2:2189122/1‑150 (MQ=255)
                                                                                                                        tGGAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTa                            >  1:2330928/1‑150 (MQ=255)
                                                                                                                        tGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTa                            <  1:1871850/150‑1 (MQ=255)
                                                                                                                        tGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTa                            >  1:4297246/1‑150 (MQ=255)
                                                                                                                         ggAATAATCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTAt                           <  2:4387921/150‑1 (MQ=255)
                                                                                                                           aataatCGCGGCTTACGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATca                         >  1:1512532/1‑150 (MQ=255)
                                                                                                                                  gcgGCTTCCGTTCCTGCATTGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCACTTGGACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAAttt                  <  2:1543808/150‑1 (MQ=255)
                                                                                                                                      cTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTgcgc              >  2:1756915/1‑150 (MQ=255)
                                                                                                                                      cTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTgcgc              >  2:4083259/1‑150 (MQ=255)
                                                                                                                                          cGTTCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATa          <  2:3240217/150‑1 (MQ=255)
                                                                                                                                          cGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATa          >  2:2790521/1‑150 (MQ=255)
                                                                                                                                          cGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATa          <  2:2961078/150‑1 (MQ=255)
                                                                                                                                            ttCCTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGc        <  1:3838642/150‑1 (MQ=255)
                                                                                                                                            ttCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGc        <  2:1944808/150‑1 (MQ=255)
                                                                                                                                            ttCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGc        <  1:1140188/150‑1 (MQ=255)
                                                                                                                                             tCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCa       >  1:1263992/1‑150 (MQ=255)
                                                                                                                                              ccTGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCaa      <  1:2038249/150‑1 (MQ=255)
                                                                                                                                               cTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCaaa     >  1:4497829/1‑150 (MQ=255)
                                                                                                                                                tGCTATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCAAAc    <  1:4224386/150‑1 (MQ=255)
                                                                                                                                                tGCTATGCATGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCAAAc    <  2:892319/150‑1 (MQ=255)
                                                                                                                                                tGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCAAAc    >  2:1205330/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
ACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTGCACCTCCACAATCTGACCCGACAGCATCCGCACCGTTACGAGCCATACGTCCATGGAATAATCGCGGCTTACGTTCCTGCAATGCCTGAAGCGACTCTTCAATCACCTTCCGCTCAACCATTCCGCCACCAATTGTACCGACGATAGAACCATCGGCGCGCACTAACATTTGTGCAGAATGGCGGGGAGTCGAGCCTCGGCTATCAACAATTTGCGCCATAGCAAACGG  >  CP009273/3007258‑3007553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A