Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F159 I0 R1
|
879 |
305.9 |
9588012 |
96.6% |
9262019 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,263,466 |
G→T |
28.5% |
intergenic (+505/+109) |
yhaC → / ← rnpB |
pentapetide repeats‑related protein/RNase P, M1 RNA component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,263,466 | 0 | G | T | 28.5%
| 207.1
/ 92.7
| 147 | intergenic (+505/+109) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (67/37); new base T (29/14); total (96/51) |
| Fisher's exact test for biased strand distribution p-value = 8.49e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 149 total aligned reads displayed.
AAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTCGTGGACAGT > CP009273/3263318‑3263615
|
aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa < 1:3843297/150‑1 (MQ=37)
ccgccgAAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt < 1:4416601/150‑1 (MQ=37)
ccgccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACt < 2:1774398/150‑1 (MQ=37)
ccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAc < 2:3387694/150‑1 (MQ=37)
cgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGTTTTTAAGGAAACCAGGTGAAACtttcc > 2:2759111/1‑146 (MQ=255)
cgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc > 2:602776/1‑150 (MQ=37)
gAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACCGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACACGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCg > 2:3252954/1‑150 (MQ=11)
aaGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGa < 1:4744168/150‑1 (MQ=37)
cGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa < 1:1572012/150‑1 (MQ=37)
ggttttttACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACATTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg < 2:831486/147‑1 (MQ=255)
ggTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTGTTGGGGATAGTGTCGTGGACCGTCATTCATCTTTCTGCCCCGCCAAAAGCACAAACCCGCCGCAGCGGGGGTTTACGGACACCCGGTGAAACTGCCCGagacgg > 2:3261259/1‑145 (MQ=11)
gTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCCCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACAGACCGATAAGcc > 2:742798/1‑150 (MQ=255)
tttttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCg > 2:1259582/1‑150 (MQ=255)
ttttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:390982/150‑2 (MQ=14)
ttttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg > 2:2776413/1‑149 (MQ=14)
ttttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAAACAGGTTAAACTGACCGAGAAGCCgg > 2:4083002/1‑149 (MQ=11)
tttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGct < 2:3613121/150‑1 (MQ=38)
aCGTAACACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttc < 2:1642129/150‑1 (MQ=255)
cGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:3246493/150‑1 (MQ=255)
gTACAACAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttctt < 2:277723/150‑1 (MQ=12)
tAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCAGCCCCACCAAAAGCAAAAACCCGCCGAAGCCGGGTTTTACGTAAACCACGTTAAACTGACCCAAAAGCCGggttcttt > 1:4777393/1‑150 (MQ=11)
aaaaCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGCCAGTCCTTCATCGTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGGTTTTACGGAAACCCGGTGAAACTGACCGATAAGCCGcgttctggg > 2:3436923/1‑147 (MQ=11)
aaaaCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGGTGTCtttt > 2:3765917/1‑150 (MQ=11)
aaaaCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGGTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCattt > 2:4512563/1‑150 (MQ=11)
ggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat < 1:2430176/150‑1 (MQ=37)
gtaaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 2:23501/147‑1 (MQ=17)
gTGAAACTGACCGATAAGCCGCGTTCTTTTGGGTATAGTGTCGCGGACAGTGATTCATCTTTCTGCCCCTCCACAAGCAAAAACCCGCCGAAGCGGGTTATTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 2:2176902/150‑1 (MQ=11)
gAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc < 1:407427/150‑1 (MQ=35)
aCTGAGCGAGATGCCGCTTTCTGGTGGGTTGAGTGTCGTGGACAGTCCTACATATTACGGGCACTCCAAAAGCAAAAACCCGCCGAATCGGGTTATTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtc < 2:1853302/150‑1 (MQ=11)
aCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGGTTCTTTTGGGTATAGcgtc > 2:1437418/1‑150 (MQ=255)
cTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtcg < 2:3186632/150‑1 (MQ=37)
tGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAATCAAAAAACCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACAGACCGATAAGCCGCGTTCTTTGGGGTAAAGcgaata > 1:1369529/1‑146 (MQ=11)
aaGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTTCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGACGAGGACAGtc > 2:2531006/1‑150 (MQ=255)
aGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGAACGATAAGCCGCTTTCTTTTGGGTAAAGCGTAGTGGACACtca > 2:4638123/1‑150 (MQ=11)
ctttTGGGTATAGTGTCGTGGACAGTCAGTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCttt < 1:2519208/150‑1 (MQ=37)
tataGTGTCGTGGACAGTCATTCATCTTTCAGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTAAATCATCATTCTGcccca > 1:1406275/1‑149 (MQ=11)
ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTATTTTGGGTATAGCCTCGTGGACAGGCATTCAAATTTAAGccccaa > 2:906266/1‑148 (MQ=11)
taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCCTTCATATGTCTGCCCCGcc > 2:114996/1‑150 (MQ=11)
taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTcc < 2:955409/150‑1 (MQ=255)
tgtCGTGGACAGTCAGTCATCTGTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAGCAGTTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaa < 2:2433568/150‑1 (MQ=255)
gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCTTGGAAAGTCCATCATAATAGAGCCCCACCaaaa > 2:1778091/1‑150 (MQ=11)
tCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAg < 1:2032272/150‑1 (MQ=37)
cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCGGCCCCACCAAAAGc > 1:4417316/1‑150 (MQ=255)
ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCAACTTTCAGCCCCACCAAAAGCaaa > 1:4148587/1‑150 (MQ=255)
ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaaa > 1:2394076/1‑150 (MQ=37)
gACAGTCATTCATCTGTCTGCCCCTCCAAAACGATAACACGGCCTTAGAGTGTTTTTACGTATACCCCTTTACACTTACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaaaa < 1:3048441/150‑1 (MQ=11)
aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGGTTTCTGTTGGGTATAGCGTCGTGGACAGGCAATCATCATTCAGCCCCTCCAAAAGCAAAAAcc > 1:2366389/1‑150 (MQ=11)
aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTATGCCCCTCCAAAAGCAAAAAcc > 1:1501944/1‑150 (MQ=255)
attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGGCATTCATCTTTCTGCCCCGCCAAAAGCAAAAACccgcc > 2:4436664/1‑150 (MQ=255)
attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCCAAAGCAAAAAAccccc > 1:2257043/1‑150 (MQ=255)
tcggCCCCTCCAAACGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 2:4050113/147‑1 (MQ=255)
tCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 2:4050090/150‑1 (MQ=37)
ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTAATTCCTCTTGCTGCCCCTCCCAAAGCAAAAACCCGCCGAAGCGGgttgtt > 1:4197185/1‑150 (MQ=11)
cccTCAAAAATCATAAACCCGCCGAACCGGGTTATTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 2:2374023/150‑1 (MQ=11)
ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTGTTTAc > 2:388618/1‑150 (MQ=37)
cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTATGCCCCGCCAAAAGCAAAAACCCGCCGAAGCGGGttttttagtta > 1:2893682/1‑144 (MQ=11)
aaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAt > 1:781117/1‑150 (MQ=38)
aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAAACCGCCGACTCGGGTTTTTACGTAAAta > 1:127328/1‑149 (MQ=255)
gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCCAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg > 2:1370835/1‑150 (MQ=255)
aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCCTTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCCAAGCGGGTGTTTAAGTAAATAAGGt > 2:375280/1‑150 (MQ=11)
aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt > 2:2310256/1‑150 (MQ=37)
aaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:3553504/1‑150 (MQ=37)
aaCCCGCCGAAGCGTGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:4083002/150‑1 (MQ=255)
aCCCGCCGTATCGGTTTTTTACGTCAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaaa < 2:4461958/150‑1 (MQ=11)
ccgccgAAGCGGGTTTTTACGTAAACCAGGTGAATCTGACCGATAAGCCGCTTTCTTTTGGTTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACt < 1:1292957/150‑1 (MQ=255)
cgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTAAATCAGGTGAAACTg > 2:2481829/1‑150 (MQ=37)
gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCAGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 2:672178/1‑150 (MQ=37)
cgAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTCTAGCGTCGTGGACAGTCAATCATCTTTCTGCCCCTCCAAAACCAAAAACCCCCCCAAGCCCGGTTTTAACTAAAACCGGGGAAACTGaac > 1:4141133/1‑148 (MQ=11)
cgAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTAAATCATCTTTCTGCCCCTCCAAAAGCAAAAACACGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:4111138/1‑150 (MQ=11)
cgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc < 1:1873288/150‑1 (MQ=37)
gAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTGTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGTTTTTAAGTAAATCCGGTTAAACTTACCg > 1:2124016/1‑150 (MQ=11)
aaGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTAAATCAGGTGAAACTGACCGa > 2:2715749/1‑150 (MQ=37)
aGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGAt > 2:2054010/1‑150 (MQ=37)
cGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa > 2:2039285/1‑150 (MQ=255)
gggTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 2:2967544/1‑150 (MQ=37)
gggTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 2:514551/1‑150 (MQ=255)
gggTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 2:2148369/1‑150 (MQ=37)
ggTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑c > 2:3694111/1‑150 (MQ=37)
ggTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCAGTCATCTTTCTGCCCCTCCCAAATCAAAAAACCCCCGAAGCGGGTTTTTTCGTAAATAAGGTGAAACAGACCGATAAG‑c > 1:4001472/1‑150 (MQ=11)
ttttACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCgg < 1:1259582/150‑1 (MQ=38)
tttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTGTCTTTTGGGTATAGCGTCGTGGACAGTCATTCCTAATTGTGCCCCTCCCAAATCAAAAAACCGCCGAAGCGGGTTTTTTCGGAAATCCGGTGTAACTGAACGATAAT‑CCggg > 1:2214584/1‑150 (MQ=11)
ttACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAACTCAGGTGAAACTGACCGATAAT‑CCgggg > 2:3721698/1‑149 (MQ=255)
ttACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCCCCGAAGCGGGTTTTTACGTAAATCACGTGAAAAGGACCGATAAG‑ACGGGt > 2:3996927/1‑150 (MQ=14)
ttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGGCCGGCATTAATCGTTGTGGCCCGCCCAAATCAAAAAACCGCCGCAGCGGGTGTTTTCGGAAAACAGGTGTAACTGACCGCTAAGACCggg > 1:3599012/1‑150 (MQ=2)
tACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGGCCGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAAACCGCCGACGCGGGTTTTTACGGAAATCAGGTGCAACAGACCGATAAG‑CCGGGtt > 1:3698638/1‑150 (MQ=14)
tACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCAATCATCTTTCTGCCCCGCCAAAAGCAAAAAACCCCCCCAGCGGGTTTTTTAGTAAATAAGGTGAAAAAGACCGATAAG‑CCcgggt > 1:3698531/1‑148 (MQ=11)
gTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATGTGTCTGCCCCGCCAAAATCAAAAACCCGCCGCCGCGGGTTTTTACGGAAATCCGGGGGACCTGCCCGGGTAG‑CCgggggctg > 2:490846/1‑145 (MQ=11)
tAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGt > 2:4749505/1‑150 (MQ=255)
aaaaCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTc > 2:4606795/1‑150 (MQ=21)
aCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTATGCCCCGCCAAAAGCAAAAACCCGCCGAATCGGGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTCGt > 1:4514995/1‑150 (MQ=255)
cAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATGTTTCTGCACCGCCAAAATAAAAAAACCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTCGTgg > 2:1652665/1‑150 (MQ=14)
aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAg < 1:4531934/95‑1 (MQ=33)
aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATa < 1:3944179/131‑1 (MQ=34)
aGGTGAAACTGACCGATAAGCCGCTTTCTGTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGACGCGGGGTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGGTCTGTCGTggc > 2:3564725/1‑149 (MQ=255)
aGGTGAAACTGACCGATAAGCCGCTTTCTGTTGGGTATAGCGTCGTGGACAGTCAATCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTCGTGGa > 1:720217/1‑150 (MQ=255)
ggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGTCAGTCATTCATATTTCTGCCCCTCCCAAAGCAAAAAACCCCCGAAGCGGGGTTTTAAGTAAATAAGGTTAAACTGACCGATAAG‑CCGGGTTCTGTCGTGGAc > 2:420794/1‑150 (MQ=14)
ggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCCAAAGCAAAAAACCCCCGAAGCGGGTTTTTAAGTAAATAAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTAGGGGAc > 2:420886/1‑150 (MQ=14)
gTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTACATCAGGTGAAACAGACCGCTCAC‑CCGGGGTCTGTCGGGGACa > 2:3786042/1‑150 (MQ=11)
tGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATATTTCTGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGGTTTTACGTAAATCAGGTGTAACAGACCGATAAT‑CCGGGGTCTGTCGTGGGCAg > 1:2571776/1‑150 (MQ=14)
gAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAATCAGGTGAAACTGACCGAAAAG‑CCCGGTTCTGTCGTGGACCGt > 1:2237708/1‑150 (MQ=14)
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AAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAG‑CCGGGTTCTGTCGTGGACAGT > CP009273/3263318‑3263615
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
