Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F342 I0 R1
|
1331 |
225.9 |
7641038 |
95.8% |
7320114 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,222,656 |
A→G |
20.8% |
intergenic (+112/+261) |
yohP → / ← dusC |
uncharacterized protein/tRNA‑dihydrouridine synthase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,222,656 | 0 | A | G | 20.8%
| 93.3
/ 17.4
| 85 | intergenic (+112/+261) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Reads supporting (aligned to +/- strand): ref base A (4/46); new base G (10/3); total (19/66) |
| Fisher's exact test for biased strand distribution p-value = 1.80e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCA > CP009273/2222512‑2222803
|
gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑ggg < 2:1540132/148‑1 (MQ=255)
gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑ggg < 2:601562/148‑1 (MQ=255)
gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑ggg < 2:1540108/148‑1 (MQ=255)
gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑ggg < 2:2793404/148‑1 (MQ=255)
gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑ggg < 2:1540101/148‑1 (MQ=255)
tgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑gg‑g‑ggggggg > 2:2263836/1‑146 (MQ=255)
tgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑gg‑g‑ggggggc > 2:2263843/1‑146 (MQ=255)
cTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Gg‑g‑gggggggggg > 1:989099/1‑146 (MQ=255)
cTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Gg‑g‑gggggggggg > 1:989128/1‑146 (MQ=255)
ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCaa < 1:2563044/148‑1 (MQ=255)
tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGG‑G‑GGGGGCGGcccaaca > 2:3584338/1‑143 (MQ=255)
tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGC‑C‑GGGGGGGCCCaaccc > 2:3583785/1‑145 (MQ=255)
aTTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGC‑G‑GGGGGGGGcccaagcc > 2:2921606/1‑142 (MQ=255)
aGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATcgccgccgc < 2:3537590/148‑1 (MQ=255)
gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGC‑G‑GGGGGGGGCCCA‑Cgccgccccc > 2:2333839/1‑148 (MQ=255)
gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑C‑GGGGGGGGCCCCACgccgccccc > 2:2333818/1‑148 (MQ=255)
gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑G‑GGGGGGGGCCCAAAgccgccccc > 2:2462109/1‑148 (MQ=39)
gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGATCCTGTCATGTGCATTGCTTCATATAATCAATGGCGCAAGGAGCGC‑GC‑A‑GGTGTCTGCCAATCgcctccgcc < 2:45535/148‑1 (MQ=255)
tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑G‑CGGGGCGGCCCCGACCCGCCGcccc > 2:2476341/1‑148 (MQ=255)
tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGcccc < 2:345885/148‑1 (MQ=255)
gatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑C‑GGGGGGGGCGACTCcccccccccccc > 2:2350742/1‑148 (MQ=255)
gatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGccccc < 2:1618911/148‑1 (MQ=255)
ttttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGG‑GGGGGGGGCCAAAGCCCGccccccccccc > 2:60578/1‑145 (MQ=255)
attaattaATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGC‑G‑GGGGGGGGCCAA‑CCCCGCccccccccc‑ccccccccg > 2:3299159/1‑146 (MQ=255)
attaattaATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑G‑GGGGGGGGGCCCCCGccccccccccccc‑ccccccccc > 2:2286688/1‑146 (MQ=255)
attaattaATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑C‑GGGGGGGGGCACGAGCCGCccccccccc‑ccccccccg > 2:2110308/1‑146 (MQ=255)
ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑G‑GGGGGGGGGCCGCCGccccccccccccc‑cccccccccc > 1:2269583/1‑145 (MQ=255)
taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGc < 2:1260669/148‑1 (MQ=255)
aattaatGTCATCTGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACGGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGct < 2:185472/148‑1 (MQ=255)
caGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑G‑GGGGGGGGGCCCACGCCCCCCCCCCCCC‑CACCCCCCCCCCCGGGCGAACaaa > 2:30471/1‑148 (MQ=255)
caGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACaaa < 2:545227/148‑1 (MQ=255)
tggTCCGAAAATAACTAGAATATTTCAGTCTCTCATCCTGTTGGGCTCCTGTAATGTGCTTTGCTTCATATAATCAGTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCAAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACaaaa < 1:2525767/147‑1 (MQ=21)
aGGTCCTAAAATAACTATAATATTTCAGTCTCTCATCGTGTTGGGCTCCTGTCTTGTGCATTGCTTAATATAATCACTGGCGCAAGGAGCGC‑GC‑T‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACaaaa < 1:2817000/148‑1 (MQ=21)
aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACaaaa < 2:3735792/148‑1 (MQ=255)
ggTCCTAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAAt < 2:2309177/148‑1 (MQ=255)
tCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑AGGGGGGGGGCCAAAC‑CCCCCCCCCCCCG‑CACCCCCCCGCCCCGGCGCACaaaaaac > 2:948546/1‑145 (MQ=255)
ccGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GG‑C‑GGGGGGGGGCCCGCGCCCCCCCCCCCCG‑CCCCCCCCCGCCCGGGCGGACaaaaacac > 2:2584115/1‑144 (MQ=255)
ccGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATcgc < 2:731258/148‑1 (MQ=255)
gAAAATAACGAGAATATTTCAGTCTCTCTTCCTTTTGCGCGCCTGTCATGTGCATTGCTTCATATAATCACGGGCGCAAGGAGCGC‑GC‑T‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATagccg < 2:334766/148‑1 (MQ=25)
gAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCTTTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑C‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATagccg < 2:334782/148‑1 (MQ=255)
gAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATagccg < 2:79657/148‑1 (MQ=255)
aaTAACGATATTTTTTCAGTCTCTCATCCTGTTGCGCTCGTGTAATGTGCATTGATTAATATAATCCCTGGCGCACGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTg < 2:1018908/148‑1 (MQ=18)
aaTAACGATAATATTTCTGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCTTTGCTTAATATAAACACTGGCGCAAGGAGGGC‑GC‑T‑GGGGGGGCCCAATCGCCGCGGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTg < 2:1019068/148‑1 (MQ=18)
aacgtcaaTATTTCAGTCTCTCCTCCTTTTGCTCTCCTGTCATGTGCATTGCTTCATATAATCAGTGGCGATAGGAGCGC‑GC‑A‑GGGGGAGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgcgc < 2:3596492/142‑1 (MQ=21)
cGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCACGGGCTCTGGCGAACAAAATCGCCGCTGCGCgg > 2:2491174/1‑148 (MQ=255)
tCAGTCTCTCATCCTGTTGCGCTCGTGTCATGTGCTTGGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAACCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:1352244/148‑1 (MQ=255)
tCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGAATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:1352283/148‑1 (MQ=255)
tCAGTCTCTCATCCTGTGGCGCTCCTGTCTTGTGCTTTGCTTCATATAATCCCGGGCGCACGGAGCGC‑GC‑A‑GGGGGCGGCAAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:1333866/148‑1 (MQ=18)
tCAGTCGCTCAGCCTGTTGCGCGCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:2623804/148‑1 (MQ=255)
ctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 2:3068142/148‑1 (MQ=255)
ctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 2:3057597/148‑1 (MQ=255)
ctcATCCTGTGGCGCTCCTGTCTTGTGATTTGATTAATATAATCCGTGGCGCAAGGCGCGC‑GC‑T‑GGGGGCGGCCAAGCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 1:951892/148‑1 (MQ=17)
ctcATCCGGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 2:839682/148‑1 (MQ=255)
ctcAGCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 2:3068036/148‑1 (MQ=255)
tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCt < 2:1516494/148‑1 (MQ=255)
cATCGTGTTGCGCTCGTGTCTTGTGCTTTGCTTCATATAAGCAGGGGCGCCCGGCGCGC‑GC‑C‑GGGGGCGCCCAAGCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:210660/148‑1 (MQ=17)
cATCGTGTTGCGCTCCTGTCTTGTGCTTTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑C‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:3400078/148‑1 (MQ=17)
cATCGTGTGGCGCTCCTTTCTTGTGATTTGTTTAATATACTCAGGGGCGCACGGGGCGC‑GC‑G‑GGGGGCGCCCAACCCCCCCCGCCCCCGG‑CACCCCCGGGCTCGGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:1798437/148‑1 (MQ=9)
cATCCTGTGGCGCTCCTGTCATGTGCAGTGCTAAATATAACCAGGGGCCCACGGCGCGC‑GC‑C‑GGGGGCGCCAAACCGCCCCCCCCCCCCC‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:1408352/148‑1 (MQ=14)
ccTGTTGCGGTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGGCAATAGCCGCCCCCCCCCGCCCCCCCCGGGCGCTGGGGAACAAAAACCCCGCGGCGCGGTGCCCACGGCGTATCCGTTAc > 2:842888/1‑148 (MQ=18)
gtGTTGGGCTCTTGTCTTGTGATTTTATTAATATAACCAGTGGCGCATGGTGCGC‑GC‑T‑GGGGGGGGCCAATCGCCGCCGCCCCGTG‑CACCCCCGGGATCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACgg < 1:2406934/147‑1 (MQ=11)
gcTCGTGTCATGTGATTTGCTACATATAATCACTGGCGCCTGGAGCGC‑GC‑T‑GGGGGCGCCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCgg < 1:1506745/148‑1 (MQ=14)
cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCggg < 2:3691934/148‑1 (MQ=255)
cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCggg < 2:3691910/148‑1 (MQ=255)
tCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 2:2684245/148‑1 (MQ=255)
aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 2:2843602/148‑1 (MQ=255)
tgtgAATTGCTAAATATAACCACGGGCCCATGGTGCGC‑GC‑T‑GGGGGCGGCCAAGCGCCGCCCCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGcgcg < 1:2095134/148‑1 (MQ=11)
tgatttGCTTCATAAAACCCCGGGCCCCGGGCGCGC‑GC‑G‑GGGGGCGCCCAAGCGCCGCCCCCCCCGC‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 1:2921606/144‑1 (MQ=11)
gctttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 2:494889/145‑1 (MQ=255)
gCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 2:3748065/148‑1 (MQ=255)
aaTTGATTCATATAATCACTGGCGCATGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 2:2022684/147‑1 (MQ=255)
aTTGCTTCATATAATCACTGGCGCACGGCGCGC‑GC‑T‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 1:292528/148‑1 (MQ=255)
tggCTTAATATAACCCCGGGCGCACGGCGGGC‑GC‑G‑GGGGGCGCCCAAGCCCCGCCCCCCCCGC‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 1:1095219/146‑1 (MQ=11)
tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc < 2:212686/148‑1 (MQ=255)
cATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATccc < 2:1202193/148‑1 (MQ=38)
aggggCCCATGGCGCGC‑GC‑T‑GGGGGCGCCAACCCGCCGCCGCCCCCGC‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 1:3551142/145‑1 (MQ=11)
cgcAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 1:934701/148‑1 (MQ=32)
gcACGGAGCGC‑GC‑T‑GGGGGCGGCCACGCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:1511267/148‑1 (MQ=11)
gcAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:758181/148‑1 (MQ=32)
gAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:2012486/148‑1 (MQ=32)
gAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:3141558/148‑1 (MQ=32)
aGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 2:645478/148‑1 (MQ=32)
aGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 2:2052140/148‑1 (MQ=32)
gc‑gc‑T‑GGGGGGGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 1:544663/148‑1 (MQ=17)
gc‑gc‑T‑GGGGGCGGCCAAGCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 1:2462109/148‑1 (MQ=17)
gc‑gc‑C‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCGGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 1:2462596/148‑1 (MQ=17)
gc‑gc‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:1341636/148‑1 (MQ=32)
c‑gc‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAt > 2:607759/1‑148 (MQ=32)
gc‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc < 2:510105/148‑1 (MQ=32)
a‑GGGGGCGGCCAAGCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa < 1:2476349/148‑1 (MQ=17)
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GTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GC‑A‑GGGGGCGGCCAATCGCCGCCGCCCCCTG‑CACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCA > CP009273/2222512‑2222803
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
