Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F342 I0 R1 1331 225.9 7641038 95.8% 7320114 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,169,188 C→A 16.2% G60C (GGT→TGT)  yqiA ← acyl CoA esterase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,169,1880CA16.2% 626.9 / 67.8 209G60C (GGT→TGT) yqiAacyl CoA esterase
Reads supporting (aligned to +/- strand):  ref base C (84/91);  new base A (13/21);  total (97/112)
Fisher's exact test for biased strand distribution p-value = 3.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 213 total aligned reads displayed.

GGTTCTCGTTCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCAGAGCGCGGCGAGCTGT  >  CP009273/3169041‑3169334
                                                                                                                                                   |                                                                                                                                                  
ggTTCTCGTTCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCAcc                                                                                                                                                    >  2:2642810/1‑148 (MQ=255)
 gTTCTCGTTCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCg                                                                                                                                                   >  1:881139/1‑148 (MQ=255)
     tcGTTCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCAt                                                                                                                                               >  2:25351/1‑148 (MQ=255)
        ttCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGtt                                                                                                                                            <  1:1470680/148‑1 (MQ=255)
        ttCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGta                                                                                                                                            <  1:3423781/148‑2 (MQ=255)
         tCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGtac                                                                                                                                           >  2:2482422/1‑146 (MQ=255)
            gACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAg                                                                                                                                        >  2:468213/1‑148 (MQ=255)
                gagaTAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACa                                                                                                                                    <  1:1217062/148‑1 (MQ=255)
                 agaTAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACaa                                                                                                                                   <  2:2712258/148‑1 (MQ=255)
                  gaTAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAAt                                                                                                                                  >  1:3668301/1‑148 (MQ=255)
                   aTAGTCCGTCAGCATTTCAAACGGGCGCACCGCCGGGTTTACCACCACTTCGTGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATg                                                                                                                                 <  2:2622038/148‑1 (MQ=255)
                   aTAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATg                                                                                                                                 >  1:1102498/1‑148 (MQ=255)
                   aTAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATg                                                                                                                                 <  1:1647450/148‑1 (MQ=255)
                   aTAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATg                                                                                                                                 <  2:2622619/148‑1 (MQ=255)
                    tAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATgg                                                                                                                                <  1:2661827/148‑1 (MQ=255)
                      gTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGAt                                                                                                                              <  2:672007/148‑1 (MQ=255)
                       tCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGAtt                                                                                                                             >  2:3756272/1‑148 (MQ=255)
                       tCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGAtt                                                                                                                             >  2:3096720/1‑148 (MQ=255)
                        ccGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACTAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTc                                                                                                                            <  1:1057181/148‑1 (MQ=255)
                        ccGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTc                                                                                                                            <  2:2087048/148‑1 (MQ=255)
                         cGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTcc                                                                                                                           <  1:399413/148‑1 (MQ=255)
                          gTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCca                                                                                                                          >  2:2728353/1‑148 (MQ=255)
                           tCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCcag                                                                                                                         >  1:3589773/1‑148 (MQ=255)
                           tCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCcag                                                                                                                         >  1:3494382/1‑148 (MQ=255)
                           tCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCcag                                                                                                                         >  2:2808986/1‑148 (MQ=255)
                               cagTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCagcagc                                                                                                                     <  1:3256298/148‑1 (MQ=255)
                                agTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGct                                                                                                                    <  2:1706006/148‑1 (MQ=255)
                                 gTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGctc                                                                                                                   >  2:3639063/1‑148 (MQ=255)
                                  ttCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGctct                                                                                                                  >  2:2285952/1‑148 (MQ=255)
                                  ttCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGctct                                                                                                                  >  2:3536136/1‑148 (MQ=255)
                                  ttCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGctct                                                                                                                  >  2:3117995/1‑148 (MQ=255)
                                       aCGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCcgc                                                                                                             >  1:238416/1‑148 (MQ=255)
                                       aCGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCcgc                                                                                                             >  1:1797553/1‑148 (MQ=255)
                                             gcACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGa                                                                                                       <  1:1332617/148‑1 (MQ=255)
                                             gcACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGa                                                                                                       <  1:3725187/148‑1 (MQ=255)
                                             gcACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGa                                                                                                       <  1:3189976/148‑1 (MQ=255)
                                              cACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGaa                                                                                                      >  1:618704/1‑148 (MQ=255)
                                                ccgccgGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAgg                                                                                                    <  2:3400435/148‑1 (MQ=255)
                                                  gccgGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGAt                                                                                                  <  2:605344/148‑1 (MQ=255)
                                                  gccgGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGAt                                                                                                  <  2:1206341/148‑1 (MQ=255)
                                                      ggTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATAcgg                                                                                              <  1:2179214/148‑1 (MQ=255)
                                                        tttACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATAcggcg                                                                                            >  1:2841600/1‑148 (MQ=255)
                                                            ccaccaCTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCaa                                                                                        <  2:2276743/148‑1 (MQ=255)
                                                             caccacTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAAc                                                                                       >  1:708140/1‑148 (MQ=255)
                                                              accacTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACt                                                                                      >  2:1344958/1‑148 (MQ=255)
                                                               ccacTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTg                                                                                     >  2:2251632/1‑148 (MQ=255)
                                                                   tGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGa                                                                                 <  2:402247/148‑1 (MQ=255)
                                                                   tGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGa                                                                                 <  1:590746/148‑1 (MQ=255)
                                                                    gCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGaa                                                                                <  1:1070808/148‑1 (MQ=255)
                                                                         cagcaTAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatc                                                                           <  2:3668301/148‑1 (MQ=255)
                                                                         cagcaTAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatc                                                                           <  1:328912/148‑1 (MQ=255)
                                                                          agcaTAAAACATTGTGACAACCAGGTGGTGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatca                                                                          <  1:2530482/148‑1 (MQ=255)
                                                                           gcaTAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatcat                                                                         <  1:178679/148‑1 (MQ=255)
                                                                           gcaTAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatcat                                                                         <  1:2621143/148‑1 (MQ=255)
                                                                            caTAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatcatc                                                                        >  2:106419/1‑148 (MQ=255)
                                                                            caTAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGatcatc                                                                        >  1:2205963/1‑148 (MQ=255)
                                                                              tAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCAtctc                                                                      >  1:1966504/1‑148 (MQ=255)
                                                                               aaaaCATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCa                                                                     <  1:3216175/148‑1 (MQ=255)
                                                                                aaaCATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCaa                                                                    <  1:349888/148‑1 (MQ=255)
                                                                                aaaCATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCaa                                                                    <  2:1761543/148‑1 (MQ=255)
                                                                                 aaCATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAAc                                                                   >  1:2487350/1‑148 (MQ=255)
                                                                                 aaCATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAAc                                                                   >  1:2261136/1‑148 (MQ=255)
                                                                                 aaCATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAAc                                                                   <  1:636842/148‑1 (MQ=255)
                                                                                     ttGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCa                                                               <  1:2983472/148‑1 (MQ=255)
                                                                                       gtgACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAgg                                                             <  1:3117267/148‑1 (MQ=255)
                                                                                         gACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGt                                                           >  2:2049770/1‑148 (MQ=255)
                                                                                          aCAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTg                                                          <  1:2819515/148‑1 (MQ=255)
                                                                                          aCAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTg                                                          <  2:1623031/148‑1 (MQ=255)
                                                                                                       gTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCgccagc                                             <  1:2491597/148‑1 (MQ=255)
                                                                                                       gTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCgccagc                                             <  1:2922489/148‑1 (MQ=255)
                                                                                                             tCCCCCCCGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGttt                                       <  2:2153942/148‑1 (MQ=255)
                                                                                                              ccccccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGtttt                                      >  2:467039/1‑148 (MQ=255)
                                                                                                              ccccccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGtttt                                      >  1:1924139/1‑148 (MQ=255)
                                                                                                              ccccccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGtttt                                      >  2:1794490/1‑148 (MQ=255)
                                                                                                                ccccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGtttttt                                    >  1:285670/1‑148 (MQ=255)
                                                                                                                 cccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTa                                   >  2:313085/1‑148 (MQ=255)
                                                                                                                 cccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTa                                   <  2:1797553/148‑1 (MQ=255)
                                                                                                                  ccAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTaa                                  <  2:1102498/148‑1 (MQ=255)
                                                                                                                   cAGTGACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAAc                                 >  1:3098307/1‑148 (MQ=255)
                                                                                                                    aGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACa                                <  1:742089/148‑1 (MQ=255)
                                                                                                                    aGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACa                                >  2:3605556/1‑148 (MQ=255)
                                                                                                                    aGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACa                                <  1:1344958/148‑1 (MQ=255)
                                                                                                                     gTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACaa                               <  2:3589773/148‑1 (MQ=255)
                                                                                                                      tGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAg                              >  2:795710/1‑148 (MQ=255)
                                                                                                                       gACGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGc                             <  1:354969/148‑1 (MQ=255)
                                                                                                                        aCGAACCGACAATACCCAGCGAATCACCGCCTTGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCt                            >  2:2875683/1‑148 (MQ=255)
                                                                                                                        aCGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCt                            <  2:9108/148‑1 (MQ=255)
                                                                                                                        aCGAACCGACAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCt                            >  2:214048/1‑148 (MQ=255)
                                                                                                                             ccGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCtt                       >  1:2063295/1‑148 (MQ=255)
                                                                                                                             ccGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCtt                       >  1:1235962/1‑148 (MQ=255)
                                                                                                                              cGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCttt                      <  1:1870775/148‑1 (MQ=255)
                                                                                                                                 cAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGc                   >  2:2385577/1‑148 (MQ=255)
                                                                                                                                 cAATACCCAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGc                   >  2:3770205/1‑148 (MQ=255)
                                                                                                                                 cAAGACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATGTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGc                   <  1:3089527/148‑1 (MQ=255)
                                                                                                                                  aaTACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCa                  >  2:1493156/1‑148 (MQ=255)
                                                                                                                                    tACCCAGCGAATCACCGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCaga                >  1:1996422/1‑148 (MQ=255)
                                                                                                                                        cAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCAGAgcgc            >  1:2942978/1‑148 (MQ=255)
                                                                                                                                        cAGCGAATCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCAGAgcgc            >  1:1036739/1‑148 (MQ=255)
                                                                                                                                              aTCACAGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCAGAGCGCGGCGAg      >  1:3120486/1‑148 (MQ=255)
                                                                                                                                                  ccGCCATGTACCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCAGAGCGCGGCGAGCTGt  >  2:295747/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GGTTCTCGTTCTGACCGAGATAGTCCGTCAGCAGTTCAAACGGGCGCACCGCCGGGTTTACCACCACTGCGGGCAGCATAAAACATTGTGACAACCAGGTGGCGTAATATCCCCCCAGTGACGAACCGACAATACCCAGCGAATCACCGCCATGTTCCAGGACAATGGATTCCAGCAGCTCTGCCGCGTCGGAAGGATACGGCGGCAACTGCGGAATGATCATCTCAACGTCAGGGTGATGTTCCGCCAGCCAGTTTTTTAACAAGCTCGCTTTTGCAGAGCGCGGCGAGCTGT  >  CP009273/3169041‑3169334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A