Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F342 I0 R1 1331 225.9 7641038 95.8% 7320114 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,260,998 G→T 18.2% intergenic (+41/‑215) tdcR → / → yhaB L‑threonine dehydratase operon activator protein/uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,260,9980GT18.2% 1027.1 / 145.1 366intergenic (+41/‑215)tdcR/yhaBL‑threonine dehydratase operon activator protein/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (175/124);  new base T (34/33);  total (209/157)
Fisher's exact test for biased strand distribution p-value = 2.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

Only 100 of 367 total aligned reads displayed.

ATTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGATA  >  CP009273/3260851‑3261144
                                                                                                                                                    |                                                                                                                                                  
atTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTg                                                                                                                                                    <  2:1765226/148‑1 (MQ=255)
  tttAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAg                                                                                                                                                  >  1:608390/1‑148 (MQ=255)
    tAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAgaa                                                                                                                                                <  1:1443736/148‑3 (MQ=255)
         tttCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATcaca                                                                                                                                           >  2:3632436/1‑148 (MQ=255)
          ttCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACaa                                                                                                                                          >  2:1717215/1‑148 (MQ=255)
          ttCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACaa                                                                                                                                          >  2:1355597/1‑148 (MQ=255)
               aTACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGa                                                                                                                                     <  2:1839898/148‑1 (MQ=255)
               aTACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGa                                                                                                                                     <  2:1917053/148‑1 (MQ=255)
               aTACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGa                                                                                                                                     >  2:228863/1‑148 (MQ=255)
                tACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaa                                                                                                                                    >  1:2937460/1‑148 (MQ=255)
                tACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaa                                                                                                                                    >  2:71848/1‑148 (MQ=255)
                 aCATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaat                                                                                                                                   <  1:1757556/148‑1 (MQ=255)
                 aCATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaat                                                                                                                                   <  1:698208/148‑1 (MQ=255)
                  cATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaata                                                                                                                                  <  1:2507791/148‑1 (MQ=255)
                   aTGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataa                                                                                                                                 <  2:1789098/148‑1 (MQ=255)
                    tGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataat                                                                                                                                <  2:1993955/148‑1 (MQ=255)
                    tGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataat                                                                                                                                >  1:262426/1‑148 (MQ=255)
                    tGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCATCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGaataat                                                                                                                                <  2:2628445/148‑1 (MQ=255)
                    tGTAATGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGGCATTTTGTGAATGCAATCGTTTTCAATAAATTCTTCTCCCCTCATAGGCGACGAATAGAA‑TTTTTGGTTGATAATCACAAAACtaataaa                                                                                                                                >  2:2837668/1‑147 (MQ=255)
                      tATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCATTTTTGTGTTGAGAATCACAAAACGAATAAtt                                                                                                                               >  1:1042421/1‑148 (MQ=255)
                       aTTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGc                                                                                                                             >  1:2322361/1‑148 (MQ=255)
                       aTTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGc                                                                                                                             >  1:20661/1‑148 (MQ=255)
                        ttGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCt                                                                                                                            >  1:3205764/1‑148 (MQ=255)
                         tGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTg                                                                                                                           <  1:3769740/148‑1 (MQ=255)
                             catcTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATcg                                                                                                                       >  2:390755/1‑148 (MQ=255)
                               tctcGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCAGTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATcgcc                                                                                                                     >  1:459110/1‑148 (MQ=255)
                                ctcGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATcgccg                                                                                                                    >  2:3762950/1‑148 (MQ=255)
                                   gAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGa                                                                                                                 <  1:1204940/148‑1 (MQ=255)
                                    aaCAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGAt                                                                                                                >  1:10289/1‑148 (MQ=255)
                                       aaTTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAg                                                                                                             >  1:917005/1‑148 (MQ=255)
                                       aaTTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAg                                                                                                             >  1:2528283/1‑148 (MQ=255)
                                        aTTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAgg                                                                                                            >  2:2940335/1‑148 (MQ=255)
                                         ttGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGt                                                                                                           >  1:2868797/1‑148 (MQ=255)
                                          tGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTc                                                                                                          >  1:678980/1‑148 (MQ=255)
                                            aTTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCag                                                                                                        >  2:1167577/1‑148 (MQ=255)
                                             ttAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCaga                                                                                                       >  2:275582/1‑148 (MQ=255)
                                                 cGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCagacaaa                                                                                                   >  1:178228/1‑148 (MQ=255)
                                                  gTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCagacaaag                                                                                                  <  2:138360/148‑1 (MQ=255)
                                                      aCTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCagacaaagacaa                                                                                              >  1:2596143/1‑148 (MQ=255)
                                                        tttttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGacaaca                                                                                            <  1:746553/148‑1 (MQ=255)
                                                         ttttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGAcaacaa                                                                                           >  2:2515328/1‑148 (MQ=255)
                                                          tttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAg                                                                                          <  2:1926615/148‑1 (MQ=255)
                                                           ttCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAgg                                                                                         >  1:1102628/1‑148 (MQ=255)
                                                                ttctGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAAt                                                                                    <  1:2029098/148‑1 (MQ=255)
                                                                ttctGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAAt                                                                                    <  2:536289/148‑1 (MQ=255)
                                                                ttctGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAAt                                                                                    <  2:615839/148‑1 (MQ=255)
                                                                    gACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTc                                                                                <  2:2425874/148‑1 (MQ=255)
                                                                    gACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTc                                                                                >  2:3375932/1‑148 (MQ=255)
                                                                      cAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTcac                                                                              <  2:880290/148‑1 (MQ=255)
                                                                        ggACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACag                                                                            <  1:3437896/148‑1 (MQ=255)
                                                                        ggACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACag                                                                            >  1:1482703/1‑148 (MQ=255)
                                                                            gTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCt                                                                        <  1:2317930/148‑1 (MQ=255)
                                                                            gTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCt                                                                        <  1:590197/148‑1 (MQ=255)
                                                                                ttttGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTg                                                                    <  2:63268/148‑1 (MQ=255)
                                                                                 tttGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGa                                                                   >  1:1681223/1‑148 (MQ=255)
                                                                                            aaTCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAAGTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGc                                                        <  2:2313723/148‑1 (MQ=255)
                                                                                              tCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCca                                                      >  2:362379/1‑148 (MQ=255)
                                                                                               cGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCcac                                                     >  2:1577149/1‑148 (MQ=255)
                                                                                               cGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCcac                                                     >  1:2666389/1‑148 (MQ=255)
                                                                                                  tttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGa                                                  >  1:875591/1‑148 (MQ=255)
                                                                                                  tttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGa                                                  <  1:1152631/148‑1 (MQ=255)
                                                                                                  tttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGa                                                  >  2:3229952/1‑148 (MQ=255)
                                                                                                   ttCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGaa                                                 <  2:170390/148‑1 (MQ=255)
                                                                                                       aTAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGtt                                             >  2:367453/1‑148 (MQ=255)
                                                                                                         aaaTTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGc                                           <  2:1071210/148‑1 (MQ=255)
                                                                                                            ttcttcTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAACTTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTc                                        >  1:3316711/1‑148 (MQ=255)
                                                                                                                tctcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGttt                                    <  1:3632321/148‑1 (MQ=255)
                                                                                                                tctcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGttt                                    <  1:2116300/148‑1 (MQ=255)
                                                                                                                  tcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTAc                                  <  1:1801908/148‑1 (MQ=255)
                                                                                                                  tcCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTAc                                  <  1:1559632/148‑1 (MQ=255)
                                                                                                                   ccccTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACt                                 <  1:3136583/148‑1 (MQ=255)
                                                                                                                    cccTCATAGGCGACGAATAGCA‑TTTTGTGTTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTg                                >  1:2152247/1‑148 (MQ=255)
                                                                                                                     ccTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGt                               <  2:267047/148‑1 (MQ=255)
                                                                                                                      cTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTa                              <  2:256384/148‑1 (MQ=255)
                                                                                                                        cATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAAc                            >  1:3653904/1‑148 (MQ=255)
                                                                                                                        cATAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAAc                            >  1:2746134/1‑148 (MQ=255)
                                                                                                                         aTAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACg                           >  2:844877/1‑148 (MQ=255)
                                                                                                                          tAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGc                          >  1:2578996/1‑148 (MQ=255)
                                                                                                                          tAGGCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGc                          >  1:659183/1‑148 (MQ=255)
                                                                                                                            ggCGACGAATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCg                        >  2:1207983/1‑148 (MQ=255)
                                                                                                                               gacgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGt                     <  2:773123/148‑1 (MQ=255)
                                                                                                                                acgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTa                    >  1:84721/1‑148 (MQ=255)
                                                                                                                                 cgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTaa                   <  1:1355597/148‑1 (MQ=255)
                                                                                                                                 cgaATAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTaa                   <  2:3080031/148‑1 (MQ=255)
                                                                                                                                     tAGCA‑TTTTGTGTTGAGAATCACAAAACGAATAAGTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGa               <  2:2382944/148‑1 (MQ=255)
                                                                                                                                      aGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAg              >  1:2426541/1‑148 (MQ=255)
                                                                                                                                      aGCA‑TTTTGTGTTGAGAATCACAAAACGAATAATAGCTGATCGCCGCGATAAGGTCAGAAAAAGAAAACAATGTAAATTTTCACAGAGATTTTGATCTTCGTAGTCCACAGAATGTTGATTCGTTTAATGTAACTCCGGGTAAAagag              >  2:3590121/1‑148 (MQ=255)
                                                                                                                                        cA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCg            >  2:925847/1‑148 (MQ=255)
                                                                                                                                        cA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCg            <  1:280740/148‑1 (MQ=255)
                                                                                                                                        cA‑TTTTGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCg            >  2:1026183/1‑148 (MQ=255)
                                                                                                                                           ttttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtt          >  1:2958724/1‑148 (MQ=255)
                                                                                                                                           ttttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtt          >  1:3545363/1‑148 (MQ=255)
                                                                                                                                             ttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtttt        <  2:2165322/148‑1 (MQ=255)
                                                                                                                                             ttGTGTTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGtttt        <  2:2072476/148‑1 (MQ=255)
                                                                                                                                                tgtTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTg     <  2:3353801/148‑1 (MQ=255)
                                                                                                                                                tgtTGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTg     <  1:1716083/148‑1 (MQ=255)
                                                                                                                                                 gtTTAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGa    <  1:636108/148‑1 (MQ=255)
                                                                                                                                                  ttGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGAt   <  1:350981/148‑1 (MQ=255)
                                                                                                                                                   tGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTCAATGAGCGTTTTTTGATa  >  2:3040606/1‑148 (MQ=255)
                                                                                                                                                   tGAGAATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGATa  <  2:3535178/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
ATTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTAACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCA‑TTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAGGTCAGACAAAGACAACAAGGGAAATTTTCACAGAGCTTTTGATCGGCGTAGGCCACAGAATGTTGCTTCGTTTACTGTAACGCCGGGTAAATGAGCGTTTTTTGATA  >  CP009273/3260851‑3261144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A