Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F55 I0 R1
|
519 |
344.2 |
11360120 |
95.0% |
10792114 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,170,285 |
C→T |
8.7% |
A133A (GCG→GCA) |
gatY ← |
D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,170,285 | 0 | C | T | 8.7%
| 1039.8
/ 62.6
| 311 | A133A (GCG→GCA) | gatY | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base C (109/174); new base T (10/17); total (119/192) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 320 total aligned reads displayed.
TACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTCGTGTG > CP009273/2170136‑2170434
|
tACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTcc < 1:2852321/150‑1 (MQ=255)
tACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTcc > 2:5174026/1‑150 (MQ=255)
tACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTcc < 2:436477/150‑1 (MQ=255)
tACATCCCATGAGCCGTGCCGAGGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTcc < 2:4551044/150‑1 (MQ=255)
naTCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTGCAGTGACTTGCACATCCTCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGc > 2:223235/2‑150 (MQ=255)
cATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGACTGAGCGGGGTTGGTGTACAACGCATCGGCTTCAGTGACTTGCACATCATCTTCCTGGCCGCCACGTTGCCCCAGCTCCGc > 2:3077921/1‑150 (MQ=255)
aTCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGcc > 1:1615246/1‑150 (MQ=255)
cccATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTc < 2:2366910/150‑1 (MQ=255)
cATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGa < 2:2503753/150‑1 (MQ=255)
aTGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGAc < 1:2152140/150‑1 (MQ=255)
tGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCacgacg > 1:4483336/1‑150 (MQ=255)
tGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACg < 1:2215868/150‑1 (MQ=255)
aGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCt < 1:4364979/150‑1 (MQ=255)
aGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCt < 2:632323/150‑1 (MQ=255)
cGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGAc < 1:370491/150‑1 (MQ=255)
cGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGAc < 1:1339946/150‑1 (MQ=255)
cGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGGTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGAc < 1:3335924/150‑1 (MQ=255)
gTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACa > 1:2513025/1‑150 (MQ=255)
gTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACa > 2:2623620/1‑150 (MQ=255)
gATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCaaa > 2:3920261/1‑150 (MQ=255)
tGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGc < 2:4872250/150‑1 (MQ=255)
cGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGAt < 1:3439386/150‑1 (MQ=255)
cGACCGCCAGGGAATCAATTCCGGGTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGAt < 1:4203387/150‑1 (MQ=255)
gACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATg < 1:3104886/150‑1 (MQ=255)
aCCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATgg > 1:1475454/1‑150 (MQ=255)
aCCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATgg < 2:4700408/150‑1 (MQ=255)
gggAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAAt > 2:4968179/1‑150 (MQ=255)
ggAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATc < 2:1157338/150‑1 (MQ=255)
cAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATccacca < 1:4124852/150‑1 (MQ=255)
ttCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACct > 1:1041700/1‑150 (MQ=255)
ttCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACct < 1:3216651/150‑1 (MQ=255)
tCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACctc < 2:4430105/150‑1 (MQ=255)
cGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCtt < 1:3655156/150‑1 (MQ=255)
ggTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCttt < 1:587957/150‑1 (MQ=255)
gCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGAcc < 1:2388874/150‑1 (MQ=255)
aaaTTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAat < 2:2899363/150‑1 (MQ=255)
aaaTTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAat < 1:4330082/150‑1 (MQ=255)
aaTTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAata < 2:820603/150‑1 (MQ=255)
aaTTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAata < 2:3667047/150‑1 (MQ=255)
aaTTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAata < 1:2614013/150‑1 (MQ=255)
ttCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATAtt < 2:1275984/150‑1 (MQ=255)
tCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATAttt < 1:5032427/150‑1 (MQ=255)
aCGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTg < 1:2947001/150‑1 (MQ=255)
aCGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTg < 2:102058/150‑1 (MQ=255)
gcgcCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTgcg < 2:148517/150‑1 (MQ=255)
gcgcCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTgcg < 1:4320052/150‑1 (MQ=255)
tGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCaaaa < 1:4696197/150‑1 (MQ=255)
tGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCaaaa < 1:2031026/150‑1 (MQ=255)
aGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAgg < 2:4201534/150‑1 (MQ=255)
aGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAgg < 2:4858264/150‑1 (MQ=255)
gCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGc < 2:70494/150‑1 (MQ=255)
ggTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAAt > 1:131450/1‑150 (MQ=255)
ggTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAAt < 1:3043696/150‑1 (MQ=255)
tGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACTTCAATGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCg < 2:3351251/150‑1 (MQ=255)
tGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCg > 2:3135511/1‑150 (MQ=255)
gtgtACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAg > 2:4448390/1‑150 (MQ=255)
tgtACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAgg < 2:2727317/150‑1 (MQ=255)
tACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACACTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCg > 2:285936/1‑150 (MQ=255)
cAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATTCGAGGCGTc > 1:688495/1‑150 (MQ=255)
cAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGAGAGGCGTc < 1:1874923/150‑1 (MQ=255)
cATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCa > 1:5460794/1‑150 (MQ=255)
cATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCa > 2:4022693/1‑150 (MQ=255)
aTCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCAt > 2:5618651/1‑150 (MQ=255)
aTCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCAt > 1:4078478/1‑150 (MQ=255)
aTCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCAt > 2:2811651/1‑150 (MQ=255)
ggCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGAc < 2:3220790/150‑1 (MQ=255)
gCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACt > 1:4407528/1‑150 (MQ=255)
cTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTg > 1:954949/1‑150 (MQ=255)
tCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAg < 1:350992/150‑1 (MQ=255)
tGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCa > 1:1774007/1‑150 (MQ=255)
aCTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACg > 2:1146163/1‑150 (MQ=255)
acaTCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAgaa < 2:1982192/150‑1 (MQ=255)
catcatCTTCCTGGCCGCCAAGTTGCCCCAGCTCTGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAgaac < 1:2108174/150‑1 (MQ=255)
catcatCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAgaac < 2:1804534/150‑1 (MQ=255)
catcatCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTAGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAgaac > 2:5124789/1‑150 (MQ=255)
atcatcTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGGGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAgaacg > 1:2318723/1‑150 (MQ=255)
catcTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGTGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAgaacgaa < 2:4946579/150‑1 (MQ=255)
tCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTc < 1:4807457/150‑1 (MQ=255)
tCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTc < 1:3970116/150‑1 (MQ=255)
tCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTc < 1:1976129/150‑1 (MQ=255)
ccTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCt > 2:5061480/1‑150 (MQ=255)
ccTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCt > 2:5116921/1‑150 (MQ=255)
ccTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCt < 2:1612639/150‑1 (MQ=255)
tGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGa < 2:4305064/150‑1 (MQ=255)
tGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGa < 1:5334437/150‑1 (MQ=255)
ggCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAg > 1:4708583/1‑150 (MQ=255)
gccgccAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGc > 2:3314683/1‑150 (MQ=255)
gccgccAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGc < 2:5460873/150‑1 (MQ=255)
ccgccAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCg > 1:1198511/1‑150 (MQ=255)
ccAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGata > 1:2289113/1‑150 (MQ=255)
cAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGatat < 1:754382/150‑1 (MQ=255)
aaGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATc < 2:315010/150‑1 (MQ=255)
aaGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATc > 2:550630/1‑150 (MQ=255)
ccccAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCaaa < 1:1649673/150‑1 (MQ=255)
aGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTc < 2:2088163/150‑1 (MQ=255)
aGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTc < 1:5645773/150‑1 (MQ=255)
aGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTc < 1:5530876/150‑1 (MQ=255)
aGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTc < 1:3920261/150‑1 (MQ=255)
tCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTCgtg < 1:2623620/150‑1 (MQ=255)
ccGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTCgtgt < 2:3821840/150‑1 (MQ=255)
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TACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGATGGCAAAAATCCACCACCTCTTTGACCCGTGAAATATTTTGCGCAAAAGGCAAATGCGAGGCGTCAATCATGACTGAGCGCACGCCAGAACGAACCTTCTGAGCGATATCGTCAAATTTCGTGTG > CP009273/2170136‑2170434
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
