Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F527 I0 R1 1651 322.4 10661268 95.2% 10149527 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,015,913 G→T 7.5% T188T (ACG→ACT)  fliP → flagellar biosynthesis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,015,9130GT 7.5% 1339.4 / 44.6 371T188T (ACG→ACT) fliPflagellar biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base G (161/181);  new base T (10/19);  total (171/200)
Fisher's exact test for biased strand distribution p-value = 2.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 377 total aligned reads displayed.

GCGTCAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTC  >  CP009273/2015766‑2016062
                                                                                                                                                   |                                                                                                                                                     
 cGTCAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGAtt                                                                                                                                                    >  2:1148896/1‑150 (MQ=255)
  gTCAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGAttt                                                                                                                                                   >  1:706405/1‑150 (MQ=255)
  gTCAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAAGACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGAttt                                                                                                                                                   <  2:1809239/150‑1 (MQ=255)
   tCAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGAtttt                                                                                                                                                  <  2:3067810/150‑1 (MQ=255)
    cAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTc                                                                                                                                                 >  2:2834264/1‑150 (MQ=255)
     aGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCa                                                                                                                                                >  1:1221696/1‑150 (MQ=255)
       aCCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACTATTTTCATc                                                                                                                                              >  1:766307/1‑150 (MQ=255)
        cccGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATcc                                                                                                                                             <  1:1788297/150‑1 (MQ=255)
        cccGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATcc                                                                                                                                             >  1:208629/1‑150 (MQ=255)
              aGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCttttt                                                                                                                                       <  1:3942264/150‑1 (MQ=255)
              aGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCttttt                                                                                                                                       <  1:2668466/150‑1 (MQ=255)
                gCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTg                                                                                                                                     <  2:3013457/150‑1 (MQ=255)
                 cAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGa                                                                                                                                    >  1:3163384/1‑150 (MQ=255)
                  aGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGAt                                                                                                                                   >  2:2968180/1‑150 (MQ=255)
                  aGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGAt                                                                                                                                   >  2:4915383/1‑150 (MQ=255)
                   gATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGAtt                                                                                                                                  <  2:3650095/150‑1 (MQ=255)
                   gATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGAtt                                                                                                                                  <  1:4446644/150‑1 (MQ=255)
                   gATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGAtt                                                                                                                                  <  1:3970826/150‑1 (MQ=255)
                    aTTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTa                                                                                                                                 <  1:1014854/150‑1 (MQ=255)
                     tttAGGGGTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTAt                                                                                                                                <  2:3797002/150‑1 (MQ=255)
                        aGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGa                                                                                                                             >  2:1707051/1‑150 (MQ=255)
                         gggTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGAc                                                                                                                            <  1:621799/150‑1 (MQ=255)
                         gggTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGAc                                                                                                                            <  1:5185392/150‑1 (MQ=255)
                         gggTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGAc                                                                                                                            <  2:1359668/150‑1 (MQ=255)
                         gggTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGAGGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGAc                                                                                                                            <  2:195723/150‑1 (MQ=255)
                          ggTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGAcc                                                                                                                           >  2:1513589/1‑150 (MQ=255)
                          ggTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGAcc                                                                                                                           >  1:2941910/1‑150 (MQ=255)
                           gttgttTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCt                                                                                                                          >  1:3407526/1‑150 (MQ=255)
                           gttgttTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCt                                                                                                                          <  2:2499682/150‑1 (MQ=255)
                               tttGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTg                                                                                                                      <  1:3094627/150‑1 (MQ=255)
                                       aCTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAg                                                                                                              >  1:1999602/1‑150 (MQ=255)
                                         tGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCg                                                                                                            >  2:4087133/1‑150 (MQ=255)
                                              aaTACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTg                                                                                                       <  1:979034/150‑1 (MQ=255)
                                              aaTACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTg                                                                                                       <  2:2641224/150‑1 (MQ=255)
                                              aaTACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTg                                                                                                       <  1:4799942/150‑1 (MQ=255)
                                                tACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGAt                                                                                                     <  1:3357739/150‑1 (MQ=255)
                                                tACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGAt                                                                                                     <  2:1628079/150‑1 (MQ=255)
                                                 aCCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATg                                                                                                    <  2:920459/150‑1 (MQ=255)
                                                 aCCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATg                                                                                                    <  1:4553427/150‑1 (MQ=255)
                                                 aCCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATg                                                                                                    <  1:2029995/150‑1 (MQ=255)
                                                   cGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGc                                                                                                  <  2:3718391/150‑1 (MQ=255)
                                                   cGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGc                                                                                                  <  2:3960693/150‑1 (MQ=255)
                                                    ggCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGACCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCa                                                                                                 >  1:2880633/1‑150 (MQ=255)
                                                     gCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCTGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCAt                                                                                                <  2:142211/150‑1 (MQ=255)
                                                       ccGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTg                                                                                              >  1:3656489/1‑150 (MQ=255)
                                                           tGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGga                                                                                          <  1:1291328/150‑1 (MQ=255)
                                                                 gACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGgatgatga                                                                                    <  1:3830174/150‑1 (MQ=255)
                                                                  aCCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGgatgatgat                                                                                   <  1:4212881/150‑1 (MQ=255)
                                                                  aCCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGgatgatgat                                                                                   <  2:473499/150‑1 (MQ=255)
                                                                    cTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATgg                                                                                 >  1:2319547/1‑150 (MQ=255)
                                                                    cTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATgg                                                                                 <  1:2395483/150‑1 (MQ=255)
                                                                      gAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGtt                                                                               <  2:1900829/150‑1 (MQ=255)
                                                                      gAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGtt                                                                               >  2:3274731/1‑150 (MQ=255)
                                                                        aGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTcc                                                                             <  2:4555245/150‑1 (MQ=255)
                                                                        aGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTcc                                                                             >  2:3534121/1‑150 (MQ=255)
                                                                               ccGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGcc                                                                      <  1:160504/150‑1 (MQ=255)
                                                                                cGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGcca                                                                     <  1:5206495/150‑1 (MQ=255)
                                                                                cGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGcca                                                                     <  1:1482340/150‑1 (MQ=255)
                                                                                 gATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGccac                                                                    >  2:4481846/1‑150 (MQ=255)
                                                                                      gcATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTg                                                               <  1:4893584/150‑1 (MQ=255)
                                                                                        aTTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGct                                                             >  1:5049876/1‑150 (MQ=255)
                                                                                        aTTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGct                                                             >  2:831827/1‑150 (MQ=255)
                                                                                             gCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGcc                                                        <  2:5003983/150‑1 (MQ=255)
                                                                                                cccGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCtt                                                     <  2:2869021/150‑1 (MQ=255)
                                                                                                  cGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTa                                                   <  2:534241/150‑1 (MQ=255)
                                                                                                      cTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACt                                               >  2:4039739/1‑150 (MQ=255)
                                                                                                        aCGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGa                                             <  2:2736238/150‑1 (MQ=255)
                                                                                                         cGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGAt                                            <  1:249911/150‑1 (MQ=255)
                                                                                                               cAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGtt                                      >  2:2306843/1‑150 (MQ=255)
                                                                                                               cAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGtt                                      <  1:536198/150‑1 (MQ=255)
                                                                                                               cAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGtt                                      >  1:4701144/1‑150 (MQ=255)
                                                                                                                aGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAATCTGATGCTGttt                                     >  2:3130281/1‑150 (MQ=255)
                                                                                                                aGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGttt                                     <  1:4915499/150‑1 (MQ=255)
                                                                                                                aGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGttt                                     <  1:1707051/150‑1 (MQ=255)
                                                                                                                  cGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGt                                   <  2:1221803/150‑1 (MQ=255)
                                                                                                                  cGAGTTGAAAACCGCATGTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGGGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGt                                   >  2:430128/1‑150 (MQ=255)
                                                                                                                   gAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTa                                  <  1:1041138/150‑1 (MQ=255)
                                                                                                                    aGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTAc                                 <  1:2794679/150‑1 (MQ=255)
                                                                                                                     gTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACt                                >  2:5117066/1‑150 (MQ=255)
                                                                                                                     gTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACt                                >  2:3253073/1‑150 (MQ=255)
                                                                                                                       tGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACtgg                              >  1:1338620/1‑150 (MQ=255)
                                                                                                                         aaaaCCGCATTTCAGATAGGCTTCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACtggtg                            >  2:2068191/1‑150 (MQ=255)
                                                                                                                         aaaaCCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCCTTGCTCTGCCCTTTAAACTGATGCTGTTTGTACtggtg                            >  2:5279840/1‑150 (MQ=255)
                                                                                                                         aaaaCCGCATTTCAGATAGGCTTCACGATTTTAATCCCTTTTTTGATTATCGACATGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACAATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACtggtg                            >  2:4154548/1‑150 (MQ=255)
                                                                                                                          aaaCCGCATTTCAGATAGGCTTCACGATTTTAATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACtggtgg                           <  1:3798561/150‑1 (MQ=255)
                                                                                                                           aaCCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGa                          >  2:3365843/1‑150 (MQ=255)
                                                                                                                            aCCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGAt                         <  1:1524214/150‑1 (MQ=255)
                                                                                                                            aCCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGAt                         <  1:369201/150‑1 (MQ=255)
                                                                                                                                 aTTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGAtggctg                    >  2:2238451/1‑150 (MQ=255)
                                                                                                                                   ttCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGAtggctggc                  >  2:4421036/1‑150 (MQ=255)
                                                                                                                                     cAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTGTGTACTGGTGGATGGCTGGCaa                >  2:2135878/1‑150 (MQ=255)
                                                                                                                                       gATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAAtt              <  2:38150/150‑1 (MQ=255)
                                                                                                                                       gATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAAtt              <  2:5229485/150‑1 (MQ=255)
                                                                                                                                          aGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCt           >  2:1182283/1‑150 (MQ=255)
                                                                                                                                          aGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCt           >  2:3851717/1‑150 (MQ=255)
                                                                                                                                           ggCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTg          >  2:3617664/1‑150 (MQ=255)
                                                                                                                                              ttCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTc       >  2:589592/1‑150 (MQ=255)
                                                                                                                                               tCACTATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCCATTGCTGGTCg      <  1:3200581/150‑1 (MQ=255)
                                                                                                                                                   gATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTc  <  1:3127810/150‑1 (MQ=255)
                                                                                                                                                   gATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTc  <  2:706405/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
GCGTCAGACCCGTGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATAGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCAGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTC  >  CP009273/2015766‑2016062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A