Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F527 I0 R1
|
1651 |
322.4 |
10661268 |
95.2% |
10149527 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,107,261 |
C→A |
11.9% |
D151Y (GAT→TAT) |
pppA ← |
bifunctional prepilin leader peptidase/ methylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,107,261 | 0 | C | A | 11.9%
| 885.6
/ 57.0
| 268 | D151Y (GAT→TAT) | pppA | bifunctional prepilin leader peptidase/ methylase |
| Reads supporting (aligned to +/- strand): ref base C (123/112); new base A (10/22); total (133/135) |
| Fisher's exact test for biased strand distribution p-value = 3.69e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 278 total aligned reads displayed.
ACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAC > CP009273/3107112‑3107410
|
aCGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATc < 1:2094933/150‑1 (MQ=255)
cAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAggg < 2:229583/150‑1 (MQ=255)
gAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCa < 2:4729326/150‑1 (MQ=255)
aaCTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAg > 1:2186784/1‑150 (MQ=255)
cTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGcc > 1:3259467/1‑150 (MQ=255)
cTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGcc > 1:3357101/1‑150 (MQ=255)
ttCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCAtt < 2:1787199/150‑1 (MQ=255)
cGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGt < 2:3877361/150‑1 (MQ=255)
ggCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTg < 1:1986842/150‑1 (MQ=255)
tATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATc < 1:3127919/150‑1 (MQ=255)
tATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATc > 2:4319271/1‑150 (MQ=255)
tCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGa < 1:2806807/150‑1 (MQ=255)
ccAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAg > 2:3750618/1‑150 (MQ=255)
cAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAgg < 1:4100205/150‑1 (MQ=255)
cAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAgg < 1:5073185/150‑1 (MQ=255)
aaCGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCAGTGGTGATCGAGGt > 1:4501467/1‑150 (MQ=255)
aCGCAGAGAGTAAACAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTc < 1:1299939/150‑1 (MQ=255)
aCGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTCCACACATCGGGCAGCCAGTGGTGAGCGAGGTc > 1:676569/1‑150 (MQ=255)
cGCAGAGAGTAAACAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCg < 2:4868270/150‑1 (MQ=255)
gCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGa < 1:5097628/150‑1 (MQ=255)
cAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGAt > 1:1704009/1‑150 (MQ=255)
gagagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCTCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAATCATCGGGCAGCCATTGGTGATCGAGGTCGATgt < 2:1608467/150‑2 (MQ=255)
agagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGac > 2:2361615/1‑150 (MQ=255)
gagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGaca < 1:1021270/150‑1 (MQ=255)
gagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGaca < 2:4577723/150‑1 (MQ=255)
gTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACt > 1:4222980/1‑150 (MQ=255)
gTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACt < 1:2591126/150‑1 (MQ=255)
tAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTc > 2:5112696/1‑150 (MQ=255)
aaaaGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTcgc > 1:3536776/1‑150 (MQ=255)
aGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGc > 2:1208168/1‑150 (MQ=255)
gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAAt > 1:4743448/1‑150 (MQ=255)
gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCACTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAAt > 2:3208827/1‑150 (MQ=255)
tAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCa < 2:756074/150‑1 (MQ=255)
tAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCa < 1:1791423/150‑1 (MQ=255)
aaTCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGc > 2:4625845/1‑150 (MQ=255)
tCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCa < 1:3483328/150‑1 (MQ=255)
ccaccaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAgg > 2:2813998/1‑150 (MQ=255)
ccaccaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAgg < 1:2448735/150‑1 (MQ=255)
accaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCg < 1:2393016/150‑1 (MQ=255)
ccaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCgg > 2:2662419/1‑150 (MQ=255)
caGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGa < 2:5010895/150‑1 (MQ=255)
caGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGa > 1:947496/1‑150 (MQ=255)
caGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGa > 1:2999727/1‑150 (MQ=255)
aCGCCGGTGACTGCATCTTGGAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGataat < 2:2911998/150‑1 (MQ=255)
cGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGataata > 1:4328065/1‑150 (MQ=255)
ccGGTGACTGCAGCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATatc < 2:3397494/150‑1 (MQ=255)
gTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATatcatc < 1:2609088/150‑1 (MQ=255)
gACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCACTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCAc > 1:2922924/1‑150 (MQ=255)
aCTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCTATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATAATCAcc < 2:4240298/150‑1 (MQ=255)
aCTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCAcc < 1:544719/150‑1 (MQ=255)
tGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGc < 1:1505077/150‑1 (MQ=255)
gCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGcc > 2:4374998/1‑150 (MQ=255)
aTCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAg > 1:1858282/1‑150 (MQ=255)
cTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCAATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGcc < 1:3038316/150‑1 (MQ=255)
cGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATcc < 2:359132/150‑1 (MQ=255)
tGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCACTCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCAc > 2:3439607/1‑150 (MQ=255)
gCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACttt < 2:4417582/150‑1 (MQ=255)
gACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGACCACATCCACTTTCTg < 2:3746981/150‑1 (MQ=255)
aCTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTgg > 1:3935051/1‑150 (MQ=255)
tctGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGcc > 1:625717/1‑150 (MQ=255)
ctgctgCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGcca < 2:5257118/150‑1 (MQ=255)
gctgcGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGccaga > 1:1045226/1‑150 (MQ=255)
cccATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCcagaccagac > 2:2112247/1‑150 (MQ=255)
cATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTc > 2:4740687/1‑150 (MQ=255)
cAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCa > 1:3865277/1‑150 (MQ=255)
aTCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaa > 2:5196600/1‑150 (MQ=255)
aGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaaaaa < 2:1482257/150‑1 (MQ=255)
aGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaaaaa > 1:643821/1‑150 (MQ=255)
aGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaaaaa < 2:2403418/150‑1 (MQ=255)
gTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAg < 1:3603798/150‑1 (MQ=255)
ccTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCa > 2:4686990/1‑150 (MQ=255)
cTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCaa > 1:3694766/1‑150 (MQ=255)
tGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCTCCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAg < 1:2682915/150‑1 (MQ=255)
gTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGt < 1:74670/150‑1 (MQ=255)
gTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGt < 1:2947805/150‑1 (MQ=255)
acaATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTg < 2:1960945/150‑1 (MQ=255)
acaATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTg < 2:3281390/150‑1 (MQ=255)
caATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGt > 1:2290234/1‑150 (MQ=255)
aaTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTc < 2:1745091/150‑1 (MQ=255)
aaTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTc > 1:5162601/1‑150 (MQ=255)
aaTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTc > 2:1565666/1‑150 (MQ=255)
aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 1:3427165/1‑150 (MQ=255)
aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 1:1632197/1‑150 (MQ=255)
aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 2:2533362/1‑150 (MQ=255)
aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 2:3523051/1‑150 (MQ=255)
tACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCaa > 2:1396482/1‑150 (MQ=255)
cGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCACGTGCTGTCAATa > 1:455325/1‑150 (MQ=255)
cccTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAAc < 2:3365030/150‑1 (MQ=255)
ccTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAAcc < 1:827144/150‑2 (MQ=255)
ccTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACt < 1:5075331/150‑1 (MQ=255)
aGTAAAAACATTGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccac < 1:317573/150‑1 (MQ=255)
aGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccac > 1:1400206/1‑150 (MQ=255)
aGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccac > 1:4629360/1‑150 (MQ=255)
gTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccacc > 1:1225041/1‑150 (MQ=255)
aaaCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCg > 2:1098505/1‑150 (MQ=255)
aaCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCgg > 2:40403/1‑150 (MQ=255)
aaCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCgg > 1:3458119/1‑150 (MQ=255)
cATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGAt < 1:1970585/150‑1 (MQ=255)
cGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAc < 1:2361615/150‑1 (MQ=255)
cGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAc < 2:1851526/150‑1 (MQ=255)
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ACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAC > CP009273/3107112‑3107410
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
