Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F204 I0 R1
|
1155 |
255.8 |
8356456 |
95.7% |
7997128 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,934,464 |
C→A |
36.7% |
intergenic (‑14/+106) |
lpxM ← / ← mepM |
myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase/murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,934,464 | 0 | C | A | 36.7%
| 351.4
/ 255.9
| 245 | intergenic (‑14/+106) | lpxM/mepM | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase/murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| Reads supporting (aligned to +/- strand): ref base C (91/64); new base A (47/42); total (138/107) |
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.09e-01 |
Only 100 of 248 total aligned reads displayed.
GATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTGCGCC > CP009273/1934315‑1934612
|
gATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTc > 2:3452463/1‑150 (MQ=255)
gATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTc < 1:1936123/150‑1 (MQ=255)
aTCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCg < 2:1528014/150‑1 (MQ=255)
tCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGAAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAgg > 1:1403292/1‑150 (MQ=255)
cACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGa < 2:2387621/150‑1 (MQ=255)
aCGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGAt < 1:2733243/150‑1 (MQ=255)
cGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATa < 2:4092818/150‑1 (MQ=255)
cGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATa < 1:2889976/150‑1 (MQ=255)
ggAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATaa < 1:3043644/150‑1 (MQ=255)
ggAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATaa < 1:3612930/150‑1 (MQ=255)
ggAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATACTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATaa < 1:4077085/150‑1 (MQ=255)
aaCTTTGGCGGCGTTAACGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAgg < 2:61892/150‑1 (MQ=255)
aaCTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAgg > 1:3787355/1‑150 (MQ=255)
ttGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCaaa < 2:1683226/150‑1 (MQ=255)
ggcggcGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCCATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCcaaaa > 1:1790963/1‑150 (MQ=255)
ggcgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAaatca < 2:700605/150‑1 (MQ=255)
ggcgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAaatca > 1:1751911/1‑150 (MQ=255)
ggcgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAaatca < 1:3228571/150‑1 (MQ=255)
cgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTATTTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAaatcaa > 1:3376433/1‑150 (MQ=255)
aaaGCGATACCCGCCATCGCTTCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTgg < 1:2196606/150‑1 (MQ=255)
aaaGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTgg < 1:1427055/150‑1 (MQ=255)
aaaGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTgg > 1:813796/1‑150 (MQ=255)
aGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTg > 1:1878991/1‑150 (MQ=255)
aGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTg < 2:554027/150‑1 (MQ=255)
cGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGAt > 1:686565/1‑150 (MQ=255)
aTACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAg < 1:796935/150‑1 (MQ=255)
ccATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCTTTTCCATGCTTTTCCAGTTTCGGATAAGTCAAAAATCAATCTGGTGATAGTGTAgct > 2:2237419/1‑149 (MQ=255)
aTCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAgcggc > 1:1340267/1‑150 (MQ=255)
tCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAgcggcg < 1:2948443/150‑1 (MQ=255)
cGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAATTCAATCTGGTGATAGTGTAGCGgcgc > 2:2351455/1‑150 (MQ=255)
tgctACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAAc > 1:2913991/1‑150 (MQ=255)
gctACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACt < 1:1562612/150‑1 (MQ=255)
tACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTg > 2:4034544/1‑150 (MQ=255)
ccAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCg < 2:621218/150‑1 (MQ=255)
ccATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCAcc > 1:475405/1‑150 (MQ=255)
ggtGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCATACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCTGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCa > 1:3446876/3‑150 (MQ=255)
cTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATa < 1:41728/150‑1 (MQ=255)
tCCCCAGTAGCGCGGGTGGCTAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaa > 1:520964/1‑150 (MQ=255)
tCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaa > 1:2732159/1‑150 (MQ=255)
cccAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaa > 2:3130635/1‑150 (MQ=255)
ccAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaa < 1:1575626/150‑1 (MQ=255)
aGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaaaa > 1:1018341/1‑150 (MQ=255)
aGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaaaa > 2:455193/1‑150 (MQ=255)
aGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaaaa > 2:3767425/1‑150 (MQ=255)
aGTAGCGCGGGAGGCGAAAGGATTTATCAAACTCAGGAATGTATACGCTATTA‑TTTTTTTTCGTTTCCATTCTTATAAAGTTTCGGATAAGGCAAAAATCAATATGATGATAGTGTAGCGGCGCAACTTGCCCCGCACAAAAAaaaataa > 2:3271016/1‑150 (MQ=255)
gTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAg < 2:218233/150‑1 (MQ=255)
aGCGAGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGcc < 1:1970511/150‑1 (MQ=255)
gcgcGGGTGGCGACAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCg < 2:3478928/150‑1 (MQ=255)
cgcgGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCgg < 2:371465/150‑1 (MQ=255)
cgcgGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCgg < 2:3842950/150‑1 (MQ=255)
gggTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTac < 1:390266/150‑1 (MQ=255)
tGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTactga < 2:2674640/150‑1 (MQ=255)
gCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTactgact < 1:633750/150‑1 (MQ=255)
cGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTactgactg > 2:1132503/1‑150 (MQ=255)
gAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGc > 2:284381/1‑150 (MQ=255)
aaGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGt > 2:1782885/1‑150 (MQ=255)
aTTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCg > 1:2948942/1‑150 (MQ=255)
aTTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCg > 1:3828010/1‑150 (MQ=255)
aTCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTg < 1:2371922/150‑1 (MQ=255)
tCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGc > 1:1286760/1‑150 (MQ=255)
tCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGc > 1:867591/1‑150 (MQ=255)
tCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGc > 1:1108231/1‑150 (MQ=255)
cAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCg > 2:1016223/1‑150 (MQ=255)
aaaCTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGa > 2:1480825/1‑150 (MQ=255)
aCTCAGGAATGTCTTCGCTATTA‑TTTTTATTCGTTTCCATGCTTTTCCAGTTGAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAAt < 2:3090860/150‑1 (MQ=255)
aCTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAAt < 1:2420901/150‑1 (MQ=255)
cTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGATGCGAATg > 1:1661999/1‑150 (MQ=255)
cAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGa < 2:1416128/150‑1 (MQ=255)
cAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGa > 2:2657776/1‑150 (MQ=255)
aGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGAt > 2:3104613/1‑150 (MQ=255)
aGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATAAATCTGGTGATAGTGTAGCGGCGCAACTAGCCCCGCACCCAAAAAAAAAAGCCGTTACTGACAGCGTACCGGCTGCGAATGGAt > 2:1832802/1‑150 (MQ=255)
ggAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATg > 1:2486522/1‑150 (MQ=255)
aaagTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGtt > 1:641294/4‑150 (MQ=255)
gTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaat > 2:2047669/1‑150 (MQ=255)
tATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaatt < 1:3904842/150‑1 (MQ=255)
aTTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaatta > 1:508520/1‑150 (MQ=255)
aTTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaatta < 1:472332/150‑1 (MQ=255)
gCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCa < 1:1681949/150‑1 (MQ=255)
tatta‑tTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCaaa > 1:1508550/1‑150 (MQ=255)
tttttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCt > 2:1267002/1‑150 (MQ=255)
tttttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCt > 2:119426/1‑150 (MQ=255)
tttttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCt > 1:3985970/1‑150 (MQ=255)
ttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCg < 1:3319744/150‑1 (MQ=255)
ttCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCg < 2:1961012/150‑1 (MQ=255)
tCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCgg < 2:16068/150‑1 (MQ=255)
cGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTCGCTGCGGc > 2:3639620/1‑150 (MQ=255)
cGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGc > 1:3250038/1‑150 (MQ=255)
ccATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAt < 1:1068074/150‑1 (MQ=255)
ccATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAt < 1:1641632/150‑1 (MQ=255)
cATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtc > 1:4025968/1‑150 (MQ=255)
cATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtc > 2:3375986/1‑150 (MQ=255)
tGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtctc > 2:1217432/1‑150 (MQ=255)
tGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtctc < 1:2791843/150‑1 (MQ=255)
gCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATctct > 2:253303/1‑150 (MQ=255)
ttCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTgg > 2:3138174/1‑150 (MQ=255)
aGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTg > 1:2518067/1‑150 (MQ=255)
aGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTg > 2:855626/1‑150 (MQ=255)
tttCGGATAACCCAAAAATCAATCTGGAGATAGTGAAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTCACTGCGTACCGGCTGCGAAAGGATGTTAATTAATCAAACAGTAGCAGCGGCACAATCTCTTTGGCCTgcc > 2:1424320/1‑149 (MQ=255)
tttAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTgcg > 2:2968353/1‑150 (MQ=255)
tttAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTgcg > 1:230632/1‑150 (MQ=255)
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GATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTGCGCC > CP009273/1934315‑1934612
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
