Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,082,619 C→T 42.2% intergenic (‑10/+73) yeeZ ← / ← yoeB putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,082,6190CT42.2% 150.5 / 285.7 214intergenic (‑10/+73)yeeZ/yoeBputative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base C (60/63);  new base T (42/48);  total (103/111)
Fisher's exact test for biased strand distribution p-value = 7.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 220 total aligned reads displayed.

CTATCAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAA  >  CP009273/2082470‑2082768
                                                                                                                                                     |                                                                                                                                                     
cTATCAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTAtctc                                                                                                                                                       <  2:2251909/150‑1 (MQ=255)
  aTCAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTAtcttct                                                                                                                                                     >  2:575372/1‑150 (MQ=255)
  aTCAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCt                                                                                                                                                     <  1:758130/150‑1 (MQ=255)
   tCAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTg                                                                                                                                                    <  2:357495/150‑1 (MQ=255)
    cAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGa                                                                                                                                                   >  2:3521253/1‑150 (MQ=255)
     aaTGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGAt                                                                                                                                                  >  2:2053898/1‑150 (MQ=255)
      aTGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATa                                                                                                                                                 >  1:1182796/1‑150 (MQ=255)
      aTGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATa                                                                                                                                                 <  1:3122644/150‑1 (MQ=255)
       tGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATac                                                                                                                                                >  1:3366805/1‑150 (MQ=255)
           aCTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCt                                                                                                                                            >  1:2781966/1‑150 (MQ=255)
               atacGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGAAACACCTTAGa                                                                                                                                        >  1:1734596/4‑150 (MQ=255)
                 tCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATc                                                                                                                                      >  1:3724728/1‑150 (MQ=255)
                  cGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCt                                                                                                                                     >  1:2354279/1‑150 (MQ=255)
                  cGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCt                                                                                                                                     >  2:1132134/1‑150 (MQ=255)
                   gggCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCta                                                                                                                                    >  2:3558782/1‑150 (MQ=255)
                   gggCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCta                                                                                                                                    >  1:453630/1‑150 (MQ=255)
                   gggCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCta                                                                                                                                    >  1:1485745/1‑150 (MQ=255)
                   gggCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTGTTTCCTCCGTTATCTCCTGATACACCTTAGATCta                                                                                                                                    >  2:2295666/1‑150 (MQ=255)
                    ggCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCtat                                                                                                                                   <  2:3898130/150‑1 (MQ=255)
                      ccGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATaa                                                                                                                                 <  2:3568285/150‑1 (MQ=255)
                          ttCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCt                                                                                                                             <  2:440373/150‑1 (MQ=255)
                          ttCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCt                                                                                                                             >  2:1943804/1‑150 (MQ=255)
                            cGACACCATCTTGTTTGGTTTTAATCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTAc                                                                                                                           <  2:480655/150‑1 (MQ=255)
                                acCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTa                                                                                                                       <  1:3800946/150‑1 (MQ=255)
                                acCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTa                                                                                                                       <  2:3798856/150‑1 (MQ=255)
                                  cATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGc                                                                                                                     >  2:818563/1‑150 (MQ=255)
                                  cATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGc                                                                                                                     <  1:1073088/150‑1 (MQ=255)
                                       tgtgtgGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATc                                                                                                                <  1:1943601/150‑1 (MQ=255)
                                       tgtgtgGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATc                                                                                                                <  1:1367031/150‑1 (MQ=255)
                                          gtgGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCaaa                                                                                                             <  2:3896751/150‑1 (MQ=255)
                                          gtgGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCaaa                                                                                                             <  2:3061984/150‑1 (MQ=255)
                                            ggTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAAc                                                                                                           >  2:2768863/1‑150 (MQ=255)
                                             gTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACt                                                                                                          <  1:2641309/150‑1 (MQ=255)
                                                 tACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACa                                                                                                      <  1:2506354/150‑1 (MQ=255)
                                                 tACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACa                                                                                                      >  2:2167897/1‑150 (MQ=255)
                                                 tACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACAGTAGATCTATAAGGCTACGCTAGCGAATCAAAACTGACa                                                                                                      >  2:2782245/1‑150 (MQ=255)
                                                 tACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACa                                                                                                      >  2:135327/1‑150 (MQ=255)
                                                      ccGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAattca                                                                                                 <  2:851570/150‑1 (MQ=255)
                                                      ccGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAattca                                                                                                 >  1:3065655/1‑150 (MQ=255)
                                                       cGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAattcat                                                                                                <  1:232255/150‑1 (MQ=255)
                                                       cGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAattcat                                                                                                <  2:3219360/150‑1 (MQ=255)
                                                        ggTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAattcatt                                                                                               >  1:4087432/1‑150 (MQ=255)
                                                          tGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCt                                                                                             >  2:237907/1‑150 (MQ=255)
                                                            aCTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCAGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCTTATCAAAACTGACAATTCATTCTat                                                                                           <  1:564111/150‑1 (MQ=255)
                                                              ttGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTatga                                                                                         >  1:3128491/1‑150 (MQ=255)
                                                                     ccTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGAGTATCAAAACTGACAATTCATTCTATGAATGAATc                                                                                  >  2:1899249/1‑150 (MQ=255)
                                                                      cTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCt                                                                                 <  2:494731/150‑1 (MQ=255)
                                                                       tCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTg                                                                                <  2:2172131/150‑1 (MQ=255)
                                                                        cgcgCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGt                                                                               <  2:2900022/150‑1 (MQ=255)
                                                                        cgcgCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGt                                                                               >  1:1048706/1‑150 (MQ=255)
                                                                              gAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCaata                                                                         <  2:928402/150‑1 (MQ=255)
                                                                              gAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCaata                                                                         <  2:1851021/150‑1 (MQ=255)
                                                                                 aGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATg                                                                      <  1:2742441/150‑1 (MQ=255)
                                                                                 aGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAAGTCATTCTATGAATGAATCTGTTCAATAATg                                                                      <  2:734547/150‑1 (MQ=255)
                                                                                      cATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAAc                                                                 >  2:2115401/1‑150 (MQ=255)
                                                                                      cATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAAc                                                                 <  2:704167/150‑1 (MQ=255)
                                                                                         agCCAGCGGCATGCCTAACCACACTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGGATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGAc                                                              <  1:631265/149‑1 (MQ=255)
                                                                                          gCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACa                                                             <  2:488723/150‑1 (MQ=255)
                                                                                          gCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACa                                                             <  1:3741277/150‑1 (MQ=255)
                                                                                            cAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACAtg                                                           <  1:78186/150‑1 (MQ=255)
                                                                                                ggCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACAtgctgc                                                       >  2:222274/1‑150 (MQ=255)
                                                                                                   aTGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAAt                                                    <  1:2369885/150‑1 (MQ=255)
                                                                                                     gCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGa                                                  <  1:3450315/150‑1 (MQ=255)
                                                                                                     gCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGa                                                  <  1:2235571/150‑1 (MQ=255)
                                                                                                     gCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGa                                                  <  1:860327/150‑1 (MQ=255)
                                                                                                      ccTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAg                                                 <  1:3201543/150‑1 (MQ=255)
                                                                                                        tAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAGGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCa                                               >  2:104884/1‑150 (MQ=255)
                                                                                                         aaCCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAg                                              <  1:804372/150‑1 (MQ=255)
                                                                                                          accaccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGt                                             <  2:2883633/150‑1 (MQ=255)
                                                                                                          accaccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGt                                             >  2:806965/1‑150 (MQ=255)
                                                                                                          accaccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTAGAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGt                                             <  2:2883658/150‑1 (MQ=255)
                                                                                                           ccaccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTg                                            <  1:648099/150‑1 (MQ=255)
                                                                                                            caccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGa                                           >  2:354527/1‑150 (MQ=255)
                                                                                                            caccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGa                                           >  2:2671431/1‑150 (MQ=255)
                                                                                                             accCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGaa                                          >  2:80389/1‑150 (MQ=255)
                                                                                                              cccTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAt                                         <  1:4040983/150‑1 (MQ=255)
                                                                                                               ccTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtc                                        <  2:2256260/150‑1 (MQ=255)
                                                                                                               ccTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtc                                        >  2:382923/1‑150 (MQ=255)
                                                                                                               ccTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtc                                        >  1:2714920/1‑150 (MQ=255)
                                                                                                                cTAACCCGACTATTGCGACCTTTTTCATCCTTTATCTTCTGATAGACCTTATATCTATAAGGCTACGCTAGAGTATCAAAACTGACATTTCATTCTATTAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtcg                                       <  2:2081920/150‑1 (MQ=255)
                                                                                                                  aaCCCGACAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtcgtc                                     <  1:2083345/150‑1 (MQ=255)
                                                                                                                  aaCCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtcgtc                                     <  1:1891049/150‑1 (MQ=255)
                                                                                                                        aCAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAAc                               >  2:3853396/1‑150 (MQ=255)
                                                                                                                         cAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAAcc                              >  1:423626/1‑150 (MQ=255)
                                                                                                                         cAATTGCGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAAcc                              <  2:2617606/150‑1 (MQ=255)
                                                                                                                         cAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAAcc                              <  2:1336909/150‑1 (MQ=255)
                                                                                                                              gCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGta                         <  2:1810220/150‑1 (MQ=255)
                                                                                                                               cGACCTTTTTCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGtat                        >  2:587551/1‑150 (MQ=255)
                                                                                                                                gACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGtata                       >  1:1623861/1‑150 (MQ=255)
                                                                                                                                   cTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCa                    >  2:2535592/1‑150 (MQ=255)
                                                                                                                                    tttttCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAg                   >  1:1313399/1‑150 (MQ=255)
                                                                                                                                    tttttCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAg                   >  1:3607327/1‑150 (MQ=255)
                                                                                                                                      tttCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCNGTGAATCGTCGGTAACCGCGTATACCAGAc                 <  1:3859889/150‑1 (MQ=255)
                                                                                                                                        tCATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACgg               <  2:1665646/150‑1 (MQ=255)
                                                                                                                                         cATCCGTTATCTTCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGt              >  2:1175375/1‑150 (MQ=255)
                                                                                                                                             cGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGctc          >  2:3997772/1‑150 (MQ=255)
                                                                                                                                                tATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGctcctc       >  1:462830/1‑150 (MQ=255)
                                                                                                                                                 aTCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCctct      <  1:4128225/150‑1 (MQ=255)
                                                                                                                                                   ctcCTGATACACCTTAGATCTCTAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGt    >  2:877074/1‑150 (MQ=255)
                                                                                                                                                     ccTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTaa  >  1:295776/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CTATCAATGCCACTCATTCGGGCCGCTTCGACACCATCTTGTGTGGTTTTACTCCCGGTGACTTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTATGAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAA  >  CP009273/2082470‑2082768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A