Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,505,337 T→A 29.0% L283F (TTA→TTT)  mntH ← manganese/divalent cation transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,505,3370TA29.0% 437.1 / 238.3 255L283F (TTA→TTT) mntHmanganese/divalent cation transporter
Reads supporting (aligned to +/- strand):  ref base T (98/83);  new base A (35/39);  total (133/122)
Fisher's exact test for biased strand distribution p-value = 3.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

Only 100 of 261 total aligned reads displayed.

AACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGC  >  CP009273/2505188‑2505486
                                                                                                                                                     |                                                                                                                                                     
 aCATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTa                                                                                                                                                      <  2:702349/150‑1 (MQ=255)
   aTGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCATAATCCAAAGACCGTTGCCGCAGCGTGGCTAAAc                                                                                                                                                    >  1:2686407/1‑150 (MQ=255)
     ggTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAg                                                                                                                                                  <  1:2347189/150‑1 (MQ=255)
      gTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGc                                                                                                                                                 <  1:3699370/150‑1 (MQ=255)
      gTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGc                                                                                                                                                 >  2:3254901/1‑150 (MQ=255)
        gACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCgg                                                                                                                                               >  1:359272/1‑150 (MQ=255)
          cTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGtt                                                                                                                                             <  1:1139244/150‑1 (MQ=255)
          cTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGtt                                                                                                                                             <  1:1912344/150‑1 (MQ=255)
          cTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGATTAACAGCGGtt                                                                                                                                             >  2:3555347/1‑150 (MQ=255)
           tGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTg                                                                                                                                            >  2:1152396/1‑150 (MQ=255)
           tGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTg                                                                                                                                            >  2:3620446/1‑150 (MQ=255)
             tACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCa                                                                                                                                          >  2:1274493/1‑150 (MQ=255)
             tACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCa                                                                                                                                          >  1:529973/1‑150 (MQ=255)
             tACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCa                                                                                                                                          >  1:3644705/1‑150 (MQ=255)
               cgacgCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGc                                                                                                                                        >  1:100141/1‑150 (MQ=255)
                gacgCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCg                                                                                                                                       >  2:77211/1‑150 (MQ=255)
                gacgCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCg                                                                                                                                       <  1:147907/150‑1 (MQ=255)
                   gCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCa                                                                                                                                    <  2:3827656/150‑1 (MQ=255)
                         acaGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAg                                                                                                                              >  1:2375559/1‑150 (MQ=255)
                           aGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGcc                                                                                                                            >  1:1971114/1‑150 (MQ=255)
                           aGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGcc                                                                                                                            >  2:3607920/1‑150 (MQ=255)
                           aGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGcc                                                                                                                            >  2:514596/1‑150 (MQ=255)
                             cGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCtc                                                                                                                          <  2:3129353/150‑1 (MQ=255)
                              gggATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCtca                                                                                                                         >  2:3375160/1‑150 (MQ=255)
                                      aaaGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATc                                                                                                                 <  2:4058984/150‑1 (MQ=255)
                                        aGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCgg                                                                                                               <  2:1680067/150‑1 (MQ=255)
                                        aGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCgg                                                                                                               >  1:2824497/1‑150 (MQ=255)
                                           gAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCaa                                                                                                            >  1:776264/1‑150 (MQ=255)
                                            aaTGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAac                                                                                                           >  1:12894/1‑150 (MQ=255)
                                             aTGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAaca                                                                                                          >  2:3254187/1‑150 (MQ=255)
                                               gAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACAcc                                                                                                        <  1:3186317/150‑1 (MQ=255)
                                                  gCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGt                                                                                                     <  2:2515920/150‑1 (MQ=255)
                                                    ccTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTAt                                                                                                   >  2:2771862/1‑150 (MQ=255)
                                                     cTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATg                                                                                                  <  2:2269734/150‑1 (MQ=255)
                                                     cTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATg                                                                                                  >  1:1394081/1‑150 (MQ=255)
                                                     cTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATg                                                                                                  >  1:3388050/1‑150 (MQ=255)
                                                        cATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGAcc                                                                                               >  1:2581743/1‑150 (MQ=255)
                                                         aTCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCg                                                                                              <  1:3919983/150‑1 (MQ=255)
                                                         aTCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCg                                                                                              >  2:702926/1‑150 (MQ=255)
                                                             ccaccTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGaaa                                                                                          >  1:402854/1‑150 (MQ=255)
                                                              caccTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGaaaa                                                                                         >  2:1717402/1‑150 (MQ=255)
                                                              caccTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGaaaa                                                                                         <  1:805599/150‑1 (MQ=255)
                                                                ccTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGt                                                                                       <  2:3758242/150‑1 (MQ=255)
                                                                ccTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGt                                                                                       >  2:263056/1‑150 (MQ=255)
                                                                 cTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTg                                                                                      <  1:1665514/150‑1 (MQ=255)
                                                                 cTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTg                                                                                      >  1:4141255/1‑150 (MQ=255)
                                                                  tGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTgg                                                                                     <  2:3913880/150‑1 (MQ=255)
                                                                    ccccGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGaa                                                                                   >  2:1297300/1‑150 (MQ=255)
                                                                    ccccGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGaa                                                                                   <  1:2036815/150‑1 (MQ=255)
                                                                     cccGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAc                                                                                  >  1:3085835/1‑150 (MQ=255)
                                                                      ccGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcg                                                                                 <  2:2760429/150‑1 (MQ=255)
                                                                       cGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgc                                                                                >  1:3966553/1‑150 (MQ=255)
                                                                       cGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgc                                                                                >  1:2902765/1‑150 (MQ=255)
                                                                        gCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgcc                                                                               <  2:3447341/150‑1 (MQ=255)
                                                                        gCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgcc                                                                               <  2:3447423/150‑1 (MQ=255)
                                                                           aGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgccgcc                                                                            >  2:1855072/1‑150 (MQ=255)
                                                                           aGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgccgcc                                                                            >  1:1246735/1‑150 (MQ=255)
                                                                           aGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgccgcc                                                                            >  2:2883995/1‑150 (MQ=255)
                                                                           aGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAAcgccgcc                                                                            >  2:1623857/1‑150 (MQ=255)
                                                                               tCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAACGCCCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAg                                                                        <  1:2428140/150‑1 (MQ=255)
                                                                               tCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAg                                                                        >  2:1323114/1‑150 (MQ=255)
                                                                                   caccacCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGt                                                                    <  2:1608076/150‑1 (MQ=255)
                                                                                     ccaccGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAg                                                                  <  1:729174/150‑1 (MQ=255)
                                                                                     ccaccGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAg                                                                  <  2:3484100/150‑1 (MQ=255)
                                                                                             gAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCatcatc                                                          >  1:2627143/1‑150 (MQ=255)
                                                                                                gACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGcc                                                       <  2:2985904/150‑1 (MQ=255)
                                                                                                 aCAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCa                                                      <  1:1580824/150‑1 (MQ=255)
                                                                                                    gCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGAt                                                   >  1:1629716/1‑150 (MQ=255)
                                                                                                    gCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGAt                                                   >  1:378475/1‑150 (MQ=255)
                                                                                                    gCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGAt                                                   <  2:319745/150‑1 (MQ=255)
                                                                                                     ccccGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGAtt                                                  <  1:209573/150‑1 (MQ=255)
                                                                                                     ccccGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGAtt                                                  <  1:3336226/150‑1 (MQ=255)
                                                                                                        cGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGAc                                               <  1:3264167/150‑1 (MQ=255)
                                                                                                          cagcaACCATGCTTAATCCATAGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATATGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACaa                                             <  2:716414/150‑1 (MQ=255)
                                                                                                           agcaACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACaaa                                            >  2:282480/1‑150 (MQ=255)
                                                                                                           agcaACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACaaa                                            >  2:2277789/1‑150 (MQ=255)
                                                                                                              aaCCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAAcc                                         <  1:3728403/150‑1 (MQ=255)
                                                                                                               aCCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCg                                        <  2:887060/150‑1 (MQ=255)
                                                                                                               aCCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCg                                        <  2:1345251/150‑1 (MQ=255)
                                                                                                                  aGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCa                                     <  2:1005266/150‑1 (MQ=255)
                                                                                                                       tAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGt                                >  2:553330/1‑150 (MQ=255)
                                                                                                                       tAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGt                                >  2:2033355/1‑150 (MQ=255)
                                                                                                                       tAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGt                                <  1:3570549/150‑1 (MQ=255)
                                                                                                                          tCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGACCGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCAt                             >  2:1407362/1‑150 (MQ=255)
                                                                                                                          tCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCAt                             <  2:3296191/150‑1 (MQ=255)
                                                                                                                               aGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGa                        >  2:366904/1‑150 (MQ=255)
                                                                                                                               aGACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGa                        >  2:819806/1‑150 (MQ=255)
                                                                                                                                gACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGAt                       <  2:3738742/150‑1 (MQ=255)
                                                                                                                                gACCGTTGCCGCAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGAt                       >  1:486580/1‑150 (MQ=255)
                                                                                                                                 aCCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATa                      >  1:2997232/1‑150 (MQ=255)
                                                                                                                                     ttGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCca                  >  1:775063/1‑150 (MQ=255)
                                                                                                                                     ttGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCca                  >  1:831063/1‑150 (MQ=255)
                                                                                                                                          gCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATcc             <  2:3100644/150‑1 (MQ=255)
                                                                                                                                           cAGCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATccc            >  1:1313570/1‑150 (MQ=255)
                                                                                                                                             gCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCAt          <  2:2121562/150‑1 (MQ=255)
                                                                                                                                             gCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCTTCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATATACACATCCCAt          <  2:246223/150‑1 (MQ=255)
                                                                                                                                             gCGTGGCTAAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCAt          <  2:3354125/150‑1 (MQ=255)
                                                                                                                                              cGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCAtt         >  2:272044/1‑150 (MQ=255)
                                                                                                                                               gTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCAttt        >  2:3695353/1‑150 (MQ=255)
                                                                                                                                                     tAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGc  >  2:1110617/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGTGTCCCCACCACCGTTGAAGACAGCCCCGCAGCAACCAGGCTTAATCCAAAGACCGTTGCCGCAGCGTGGCTTAACAGCGGTTGCAGCGTCAGATAAGCCTCATCAAGATCGGCAACACCAGTATGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGC  >  CP009273/2505188‑2505486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A