Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,611,391 T→A 33.6% intergenic (+95/+43) yfgD → / ← hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,611,3910TA33.6% 328.9 / 270.5 247intergenic (+95/+43)yfgD/hdaputative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
Reads supporting (aligned to +/- strand):  ref base T (74/90);  new base A (43/40);  total (117/130)
Fisher's exact test for biased strand distribution p-value = 3.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 247 total aligned reads displayed.

GGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTT  >  CP009273/2611243‑2611537
                                                                                                                                                    |                                                                                                                                                  
ggCATAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTc                                                                                                                                                   <  1:4061546/150‑1 (MQ=255)
ggCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTc                                                                                                                                                   <  1:3251190/150‑1 (MQ=255)
ggCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTc                                                                                                                                                   <  1:3251236/150‑1 (MQ=255)
     aGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATa                                                                                                                                              <  1:2469561/150‑1 (MQ=255)
     aGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATa                                                                                                                                              >  2:393203/1‑150 (MQ=255)
        gcgGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAgg                                                                                                                                           >  2:1344951/1‑150 (MQ=255)
        gcgGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAgg                                                                                                                                           >  2:2060199/1‑150 (MQ=255)
          ggATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCg                                                                                                                                         <  2:1929849/150‑1 (MQ=255)
          ggATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACAATGGATTAACTTCGCGTAGTTAGGATAAGGCg                                                                                                                                         >  1:1588134/1‑150 (MQ=255)
            aTTGGTCGTCCACCGGAGCAGGAACTGGAAAACTTGGGTTAAGATGTGCTCCAGCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGAGTAACTTCGCTTAGTTCGGATAAGGCGtt                                                                                                                                       >  2:2365852/1‑150 (MQ=39)
             ttGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACTTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTc                                                                                                                                      >  2:4004487/1‑150 (MQ=255)
               ggTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTcgc                                                                                                                                    >  2:3516015/1‑150 (MQ=255)
               ggTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTcgc                                                                                                                                    >  1:1504778/1‑150 (MQ=255)
                  cgtcCACCGGAGCAGGTACTGGAAATCGTGGTTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGACTACGAATACTATGGATTAACTTCGCGTAGTAAGGATAAGGCGTTCGcgcc                                                                                                                                 <  1:4032936/150‑1 (MQ=255)
                  cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGcgcc                                                                                                                                 <  2:594977/150‑1 (MQ=255)
                  cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGcgcc                                                                                                                                 <  2:687935/150‑1 (MQ=255)
                    tcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGcgccgc                                                                                                                               <  1:2967557/150‑1 (MQ=255)
                     ccACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCa                                                                                                                              <  2:1128397/150‑1 (MQ=255)
                         ctgAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCg                                                                                                                          <  2:2300099/148‑1 (MQ=255)
                         cGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCg                                                                                                                          >  1:3893123/1‑150 (MQ=255)
                             gCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCGAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGAGAAGGCGTTCGCGCCGCATCCGACaa                                                                                                                      <  2:3379627/150‑1 (MQ=255)
                              cAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAAt                                                                                                                     >  2:4099281/1‑150 (MQ=255)
                               aGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATa                                                                                                                    <  2:2893198/150‑1 (MQ=255)
                                  tACTGGAAATCGTGGGATAAGAGGTGCGCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACAATGGATTAACTTCGCGTAGTTAGGATAAGGCGTTCGCGCCGCATCCGACAATAAac                                                                                                                 <  2:2606778/150‑1 (MQ=39)
                                   aCTGGATATCGTGGGTTAAGTTGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTTCGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAaca                                                                                                                <  2:2390266/150‑1 (MQ=255)
                                   aCTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAaca                                                                                                                <  2:2846058/150‑1 (MQ=255)
                                       gAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCtt                                                                                                            <  2:805687/150‑1 (MQ=255)
                                         aaTCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTAt                                                                                                          >  2:1227894/1‑150 (MQ=255)
                                          aTCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATc                                                                                                         >  1:1741778/1‑150 (MQ=255)
                                            cGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGACTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTa                                                                                                       >  2:1981016/1‑150 (MQ=255)
                                             gTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTAc                                                                                                      <  1:2203146/150‑1 (MQ=255)
                                              tgcgtaaaGATGAGAACCAACCCTAGTTGAAGCACAATGCCGGATGCGACGCTTTCCACGACAAATCCTGCCTACGAATACTAAGGATTAACTTCGCGTAGTTCGGATAAAGCGTTCGCGCCGCATCAGACAAAAAACACCTTATCAACa                                                                                                     >  2:1402151/7‑150 (MQ=255)
                                                ggTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAAc                                                                                                   >  2:302374/1‑150 (MQ=255)
                                                 gTTTAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATTGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACt                                                                                                  <  2:1877505/150‑1 (MQ=255)
                                                  ttAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACtt                                                                                                 >  2:2773854/1‑150 (MQ=255)
                                                   tAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTc                                                                                                >  2:3865083/1‑150 (MQ=255)
                                                       aTGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGaa                                                                                            >  1:1149676/1‑150 (MQ=255)
                                                       aTGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGaa                                                                                            >  1:2492854/1‑150 (MQ=255)
                                                         gtgCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtt                                                                                          >  1:3977052/1‑150 (MQ=255)
                                                           gCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttc                                                                                        <  1:645939/150‑1 (MQ=255)
                                                           gCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttc                                                                                        <  1:2858331/150‑1 (MQ=255)
                                                             tCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctt                                                                                      >  1:3525123/1‑150 (MQ=255)
                                                             tCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctt                                                                                      <  1:551439/150‑1 (MQ=255)
                                                             tCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACAATGGATTAACTTCGCGTAGTTAGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctt                                                                                      <  2:3644508/150‑1 (MQ=255)
                                                               cATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAAtttctttc                                                                                    <  2:4168755/150‑1 (MQ=255)
                                                                aTCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTca                                                                                   <  1:2829416/150‑1 (MQ=255)
                                                                aTCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTca                                                                                   >  1:2767556/1‑150 (MQ=255)
                                                                aTCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTAGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTca                                                                                   <  2:1587053/150‑1 (MQ=255)
                                                                aTCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTca                                                                                   >  2:3568264/1‑150 (MQ=255)
                                                                      aGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACg                                                                             >  1:415705/1‑150 (MQ=255)
                                                                      aGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACg                                                                             >  1:4048035/1‑150 (MQ=255)
                                                                          gAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAAt                                                                         <  1:36496/150‑1 (MQ=255)
                                                                           aaGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATg                                                                        >  2:1510161/1‑150 (MQ=255)
                                                                           aaGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACACTAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATg                                                                        >  2:2575630/1‑150 (MQ=255)
                                                                             gcccagggCCGGCTGCGACGCTTGCCACGCCTTATCCGGCCTACGAATACTCTGGAATAACGTCGCGTAGTTCGGATAAGGCGTTCGCCCCGCATCCGCCCATAAACACCTGATCTACAACTTCAGAATCACTTTCACAAACGGAATGGt                                                                      <  2:3841705/143‑1 (MQ=255)
                                                                              cacaTTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCTTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTc                                                                     >  2:138481/1‑150 (MQ=255)
                                                                               acaTTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCa                                                                    <  2:178198/150‑1 (MQ=255)
                                                                               acaTTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCa                                                                    <  2:684189/150‑1 (MQ=255)
                                                                                      cGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACg                                                             >  2:523940/1‑150 (MQ=255)
                                                                                        gATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGtt                                                           <  1:3879907/150‑1 (MQ=255)
                                                                                          tGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTgc                                                         <  1:3768656/150‑1 (MQ=255)
                                                                                            cGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTgcgc                                                       >  2:1283394/1‑150 (MQ=255)
                                                                                             gACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGcgcg                                                      >  2:3281661/1‑150 (MQ=255)
                                                                                              aCGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCgg                                                     <  2:645307/150‑1 (MQ=255)
                                                                                                gCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTa                                                   <  2:2301946/150‑1 (MQ=255)
                                                                                                gCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTa                                                   >  1:2112124/1‑150 (MQ=255)
                                                                                                   tGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATc                                                <  2:3158434/150‑1 (MQ=255)
                                                                                                    gCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCg                                               <  1:103013/150‑1 (MQ=255)
                                                                                                       aCGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACg                                            <  1:3628581/150‑1 (MQ=255)
                                                                                                        cGTCTTATCTGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGc                                           >  1:1972168/1‑150 (MQ=255)
                                                                                                        cGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGc                                           <  1:979936/150‑1 (MQ=255)
                                                                                                         gTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACCATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCa                                          >  2:1838377/1‑150 (MQ=255)
                                                                                                          tCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCAc                                         <  2:1468102/150‑1 (MQ=255)
                                                                                                              aTCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATc                                     >  1:2339499/1‑150 (MQ=255)
                                                                                                              aTCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATc                                     <  1:3096200/150‑1 (MQ=255)
                                                                                                                ccGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCa                                   <  2:2380619/150‑1 (MQ=255)
                                                                                                                ccGGCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCAGCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCa                                   <  2:1648179/150‑1 (MQ=255)
                                                                                                                  ggCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAAc                                 >  1:578399/1‑150 (MQ=255)
                                                                                                                  ggCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAAc                                 <  1:2607543/150‑1 (MQ=255)
                                                                                                                  ggCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAAc                                 <  2:3291610/150‑1 (MQ=255)
                                                                                                                   gCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACt                                <  1:471496/150‑1 (MQ=255)
                                                                                                                   gCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACt                                <  1:1620699/150‑1 (MQ=255)
                                                                                                                   gCCTACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACt                                <  2:2367585/150‑1 (MQ=255)
                                                                                                                    ccTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTg                               >  1:1370616/1‑150 (MQ=255)
                                                                                                                     cTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGa                              >  2:2492800/1‑150 (MQ=255)
                                                                                                                      tACGAATACTATGGATTAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGAt                             <  2:1733178/150‑1 (MQ=255)
                                                                                                                           aTACAATGGATTAACTTCGCGTAGTTAGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAAc                        <  2:1513771/150‑1 (MQ=255)
                                                                                                                                aTGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCAt                   >  1:3650314/1‑150 (MQ=255)
                                                                                                                                   gATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATaaa                >  2:2983892/1‑150 (MQ=255)
                                                                                                                                    aTTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAAt               <  2:3335836/150‑1 (MQ=255)
                                                                                                                                     ttAACTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATa              <  1:831489/150‑1 (MQ=255)
                                                                                                                                      tAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAg             <  2:3543431/150‑1 (MQ=255)
                                                                                                                                       aaCTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGc            <  1:2060199/150‑1 (MQ=255)
                                                                                                                                        aCTTCGCGTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCg           >  2:1369330/1‑150 (MQ=255)
                                                                                                                                            cgcgTAGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTgcg       >  1:1521824/1‑150 (MQ=255)
                                                                                                                                               gTAGTTCGTATAAGGCGTTCGCGCCTCATCCGACATTAAACACCTTATCTACACCTTCAGAATTTCTTTCACAAACGGAATTGTCAGCTTATGTTGCTCGGTAATCTACGCTCGATCCATCTGTTCCAACGTCTTAAATAGCGTGCTCAt    <  2:486484/150‑1 (MQ=255)
                                                                                                                                                tAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCAtt   <  2:3730387/150‑1 (MQ=255)
                                                                                                                                                 aGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGAGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATATCGTGCGCAttt  >  2:909663/1‑150 (MQ=255)
                                                                                                                                                 aGTTCGGATAAGGCGTTCGCGCCGCATCCGAAAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATTGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCAttt  <  2:2164505/150‑1 (MQ=255)
                                                                                                                                                 aGTACGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCAttt  <  1:2695824/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAAACACCTTATCTACAACTTCAGAATTTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTT  >  CP009273/2611243‑2611537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A