Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F204 I0 R1
|
1155 |
255.8 |
8356456 |
95.7% |
7997128 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
4,097,282 |
C→A |
38.0% |
R296R (CGG→AGG) |
fieF → |
ferrous iron and zinc transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 4,097,282 | 0 | C | A | 38.0%
| 342.2
/ 250.9
| 241 | R296R (CGG→AGG) | fieF | ferrous iron and zinc transporter |
| Reads supporting (aligned to +/- strand): ref base C (88/61); new base A (45/47); total (133/108) |
| Fisher's exact test for biased strand distribution p-value = 1.43e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 244 total aligned reads displayed.
AGATTCATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGCAAGAA > CP009273/4097133‑4097430
|
aGATTCATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAc < 1:3423949/150‑1 (MQ=255)
aTTCATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACgg > 1:1096878/1‑150 (MQ=255)
aTTCATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAgg < 1:2632644/150‑1 (MQ=255)
cATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCt > 2:2867552/1‑150 (MQ=255)
cATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCt < 1:2209970/150‑1 (MQ=255)
aTTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTa > 2:2096493/1‑150 (MQ=255)
tttGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTAt < 1:982687/150‑1 (MQ=255)
tttGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTAt < 1:2486431/150‑1 (MQ=255)
ggAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCt > 1:1161124/1‑150 (MQ=255)
gAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCtt > 1:3693198/1‑150 (MQ=255)
aaTGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTc < 2:1656875/150‑1 (MQ=255)
aaTGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTc < 1:3400656/150‑1 (MQ=255)
tGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCAt > 2:438513/1‑150 (MQ=255)
ggAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATa < 1:590776/150‑1 (MQ=255)
gAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATaa > 2:1057015/1‑150 (MQ=255)
gAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATaa > 2:3667054/1‑150 (MQ=255)
aaGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAAt > 2:566984/1‑150 (MQ=255)
aGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATc > 1:296815/1‑150 (MQ=255)
aCTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAg < 1:2293926/150‑1 (MQ=255)
ctctctGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGt < 2:3076180/150‑1 (MQ=255)
tctGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGtata < 1:4124681/150‑1 (MQ=255)
ccTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAag < 1:3072143/150‑1 (MQ=255)
cTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAaga > 2:1234965/1‑150 (MQ=255)
ttGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAagaga < 1:1785577/150‑1 (MQ=255)
gTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGcc < 2:3928690/150‑1 (MQ=255)
gTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGcc < 2:2354166/150‑1 (MQ=255)
tCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAATAGATCCAg > 2:3272683/1‑150 (MQ=255)
cAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGa > 2:3465295/1‑150 (MQ=255)
cAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTGTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGa < 1:743934/150‑1 (MQ=255)
gCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGAccc > 1:3711265/1‑150 (MQ=255)
atatGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCAt > 1:2866309/1‑150 (MQ=255)
atatGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCAt < 2:3589280/150‑1 (MQ=255)
tatGGTGGAGGATCAGGTAGAGCATGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCATGGAGTGTAAAAGGTCTATGCTTTCATAATCAGTATATAAGAGAGCCAGACCCGCAtt < 2:2125854/150‑1 (MQ=255)
tggCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTtgtg > 2:1452676/1‑150 (MQ=255)
ggATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGtata > 1:146373/1‑150 (MQ=255)
ggATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGtata > 1:461215/1‑150 (MQ=255)
aTCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATaaa < 2:3049854/150‑1 (MQ=255)
tCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATaaaa > 2:3988016/1‑150 (MQ=255)
cAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAAt < 2:4142677/150‑1 (MQ=255)
cAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAAt > 1:3163227/1‑150 (MQ=255)
cAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAAt > 2:1100876/1‑150 (MQ=255)
ggTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATAc > 2:1439547/1‑150 (MQ=255)
ggTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTGTGTGTATAAAATAc > 2:486530/1‑150 (MQ=255)
tAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCg < 2:2720472/150‑1 (MQ=255)
tAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCg < 2:840572/150‑1 (MQ=255)
tAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCg < 2:1162756/150‑1 (MQ=255)
agagCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCAGTTTGTGTATAAAATAcccc > 2:3279419/1‑148 (MQ=255)
agCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCa < 2:1356910/150‑1 (MQ=255)
agCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCa < 2:1328135/150‑1 (MQ=255)
cAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCAtt < 2:2519792/150‑1 (MQ=255)
ggCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTg < 2:3816113/150‑1 (MQ=255)
ggCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTg < 1:3849656/150‑1 (MQ=255)
gCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTgg < 2:4007202/150‑1 (MQ=255)
gCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTgg < 1:282937/150‑1 (MQ=255)
gCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTgg < 1:1007166/150‑1 (MQ=255)
gCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTgg < 2:3146091/150‑1 (MQ=255)
aCGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGcctgacct < 1:2591088/150‑1 (MQ=255)
gTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATc < 2:3645861/150‑1 (MQ=255)
ttCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAAt > 1:1278761/1‑150 (MQ=255)
tCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATGTTGTGTATAAAATACCGCCATTTGGCCTGACCTGACTCaagt > 2:3783422/1‑148 (MQ=255)
ccGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTc < 1:650429/150‑1 (MQ=255)
cGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTca > 2:3505404/1‑150 (MQ=255)
gggATCGGATGTAATTATCCATCAGGACCCCAGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTcag > 2:768375/1‑150 (MQ=255)
ggATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTcagc > 2:820107/1‑150 (MQ=255)
aTCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTcagcag > 1:525021/1‑150 (MQ=255)
tCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAgg > 1:1379748/1‑150 (MQ=255)
tCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAgg > 1:262153/1‑150 (MQ=255)
ggATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGaa < 2:1893708/150‑1 (MQ=255)
ggATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGaa > 2:2558001/1‑150 (MQ=255)
ggATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGaa > 2:646761/1‑150 (MQ=255)
aTGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGt > 2:1005249/1‑150 (MQ=255)
agTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTg > 2:3174929/2‑150 (MQ=255)
aaTTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGAtt < 1:2799868/150‑1 (MQ=255)
aTTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTg > 1:2541701/1‑150 (MQ=255)
ttATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGt < 2:1286121/150‑1 (MQ=255)
aTCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACt > 1:3212482/1‑150 (MQ=255)
cAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTAt > 1:2149623/1‑150 (MQ=255)
cAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTAt > 2:3871115/1‑150 (MQ=255)
aGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGCATCAATTCAGCAGGAAGTGATTGTTATACTAtt < 2:1388355/150‑1 (MQ=255)
ggACCCCTGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTAttt < 1:1973715/150‑1 (MQ=255)
cccTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGcac > 1:3533381/1‑150 (MQ=255)
tGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACAtt < 1:3221968/150‑1 (MQ=255)
tGTTCCGTCGTACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACAtt < 1:3972346/150‑1 (MQ=255)
gTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTc < 2:1188392/150‑1 (MQ=255)
gTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTc > 1:1878579/1‑150 (MQ=255)
tCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGt > 2:1632582/1‑150 (MQ=255)
ccGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGtt < 2:716937/150‑1 (MQ=255)
cgtACCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGAt < 1:207731/150‑1 (MQ=255)
gtACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATc > 2:2020941/1‑150 (MQ=255)
ggaCCCAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATc < 2:1761253/148‑1 (MQ=255)
tACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCa < 1:831153/150‑1 (MQ=255)
cccAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATGTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACt > 2:2946162/1‑150 (MQ=255)
ccAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACtt < 1:1507430/150‑1 (MQ=255)
ccAGGGAGGGTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACtt < 2:2700665/150‑1 (MQ=255)
ggagggTAAAAGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGAt > 2:3804932/1‑150 (MQ=255)
ggTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGc > 2:3309268/1‑150 (MQ=255)
gTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGCa < 2:2649867/150‑1 (MQ=255)
gTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGCa > 1:3780802/1‑150 (MQ=255)
tAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGCaa > 2:4177375/1‑150 (MQ=255)
tAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGCaa > 1:2763481/1‑150 (MQ=255)
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AGATTCATTTGGAAATGGAAGACTCTCTGCCTTTGGTTCAGGCACATATGGTGGCGGATCAGGTAGAGCAGGCTATTTTACGGCGTTTTCCGGGATCGGATGTAATTATCCATCAGGACCCCTGTTCCGTCGTACCCAGGGAGGGTAAACGGTCTATGCTTTCATAATCAGTATAAAAGAGAGCCAGACCCGCATTTTGTGTATAAAATACCGCCATTTGGCCTGACCTGAATCAATTCAGCAGGAAGTGATTGTTATACTATTTGCACATTCGTTGGATCACTTCGATGTGCAAGAA > CP009273/4097133‑4097430
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
