Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,756,616 C→T 25.5% D52N (GAT→AAT)  sufC ← SufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,756,6160CT25.5% 598.4 / 219.8 302D52N (GAT→AAT) sufCSufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein
Reads supporting (aligned to +/- strand):  ref base C (119/106);  new base T (25/52);  total (144/158)
Fisher's exact test for biased strand distribution p-value = 2.30e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 309 total aligned reads displayed.

GTTTGCAGGAAAAACTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTAATACTTA  >  CP009273/1756468‑1756765
                                                                                                                                                    |                                                                                                                                                     
 tttGCAGGAAAAACTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAAtctt                                                                                                                                                     <  1:4583959/150‑1 (MQ=255)
     cAGGAAAAACTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCg                                                                                                                                                 <  1:1490672/150‑1 (MQ=255)
     cAGGAAAAACTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCg                                                                                                                                                 <  2:110130/150‑1 (MQ=255)
        gAAAAACTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGccc                                                                                                                                              <  2:410239/150‑1 (MQ=255)
         aaaaaCTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCg                                                                                                                                             >  1:523811/1‑150 (MQ=255)
         aaaaaCTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCg                                                                                                                                             >  1:2608097/1‑150 (MQ=255)
         aaaaaCTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCg                                                                                                                                             >  2:1486549/1‑150 (MQ=255)
            aaCTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCa                                                                                                                                          <  1:4123602/150‑1 (MQ=255)
            aaCTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCa                                                                                                                                          >  1:618175/1‑150 (MQ=255)
             aCTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCaa                                                                                                                                         >  2:4083591/1‑150 (MQ=255)
               tGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGc                                                                                                                                       >  1:1598106/1‑150 (MQ=255)
                ggTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCg                                                                                                                                      >  2:1705080/1‑150 (MQ=255)
                    aCTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGc                                                                                                                                  >  2:532609/1‑150 (MQ=255)
                      tGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCg                                                                                                                                <  1:1388407/150‑1 (MQ=255)
                      tGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCg                                                                                                                                >  1:4833679/1‑150 (MQ=255)
                        acacCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGAt                                                                                                                              <  2:2729509/150‑1 (MQ=255)
                         cacCTTGAATCTCCACCGGATTCTGGAAGGCCATAAAGCTGCCTGCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATa                                                                                                                             <  1:4624095/150‑1 (MQ=255)
                          acCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATaa                                                                                                                            <  2:3682795/150‑1 (MQ=255)
                            cTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAgg                                                                                                                          >  1:2092727/1‑150 (MQ=255)
                             tGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGt                                                                                                                         >  1:3439758/1‑150 (MQ=255)
                             tGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGACTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGt                                                                                                                         <  2:1715916/150‑1 (MQ=255)
                              ggAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTa                                                                                                                        <  2:3487746/150‑1 (MQ=255)
                                aaTCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACt                                                                                                                      >  2:3144211/1‑150 (MQ=255)
                                 aTCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACtt                                                                                                                     <  2:3659685/150‑1 (MQ=255)
                                 aTCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACtt                                                                                                                     <  2:1195457/150‑1 (MQ=255)
                                   ctcCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACtttt                                                                                                                   <  1:1252853/150‑1 (MQ=255)
                                   ctcCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACtttt                                                                                                                   <  2:144274/150‑1 (MQ=255)
                                   ctcCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACtttt                                                                                                                   >  1:3630975/1‑150 (MQ=255)
                                       aCCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGccc                                                                                                               <  1:3721540/150‑1 (MQ=255)
                                        ccGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCg                                                                                                              >  2:4719605/1‑150 (MQ=255)
                                         cGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGa                                                                                                             >  1:1966128/1‑150 (MQ=255)
                                          ggATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGaa                                                                                                            >  2:3534705/1‑150 (MQ=255)
                                            aTACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAAcc                                                                                                          <  2:329617/150‑1 (MQ=255)
                                            aTACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAAcc                                                                                                          >  1:3777569/1‑150 (MQ=255)
                                            aTACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAAcc                                                                                                          >  1:1763736/1‑150 (MQ=255)
                                            aTACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAAcc                                                                                                          >  1:4216851/1‑150 (MQ=255)
                                            aTACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAAcc                                                                                                          <  1:2792725/150‑1 (MQ=255)
                                              aCTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCTCAAGCAAATCTTTGTCTTTGAACTCAACCGTGACGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGt                                                                                                        >  1:168878/1‑150 (MQ=255)
                                                tGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGttt                                                                                                      <  2:542734/150‑1 (MQ=255)
                                                 ggAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTg                                                                                                     <  1:532667/150‑1 (MQ=255)
                                                  gAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTgg                                                                                                    <  1:4469077/150‑1 (MQ=255)
                                                  gAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTgg                                                                                                    <  1:4522620/150‑1 (MQ=255)
                                                      gCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGcccc                                                                                                <  2:4746509/150‑1 (MQ=255)
                                                       ccATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCa                                                                                               >  2:3935142/1‑150 (MQ=255)
                                                       ccATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCa                                                                                               <  2:1552076/150‑1 (MQ=255)
                                                       ccATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCa                                                                                               <  2:4013192/150‑1 (MQ=255)
                                                       ccATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCa                                                                                               >  2:2841592/1‑150 (MQ=255)
                                                       ccATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCa                                                                                               <  2:631573/150‑1 (MQ=255)
                                                         aTAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATa                                                                                             <  1:2363695/150‑1 (MQ=255)
                                                         aTAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATa                                                                                             <  1:989529/150‑1 (MQ=255)
                                                          tAAAGATGCCTTCGCCCTCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATaa                                                                                            <  2:2549225/150‑1 (MQ=255)
                                                          tAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATaa                                                                                            >  2:2040888/1‑150 (MQ=255)
                                                               aTGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCg                                                                                       <  1:2433591/150‑1 (MQ=255)
                                                               aTGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCg                                                                                       <  1:934844/150‑1 (MQ=255)
                                                                tGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGt                                                                                      >  1:3196118/1‑150 (MQ=255)
                                                                tGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGt                                                                                      >  1:1201120/1‑150 (MQ=255)
                                                                     tCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACt                                                                                 <  2:4702685/150‑1 (MQ=255)
                                                                       gCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTc                                                                               >  2:1950466/1‑150 (MQ=255)
                                                                                aTCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATg                                                                      <  1:1870857/150‑1 (MQ=255)
                                                                                aTCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATg                                                                      <  1:3051130/150‑1 (MQ=255)
                                                                                  cTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGaa                                                                    >  1:1981252/1‑150 (MQ=255)
                                                                                    tCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACg                                                                  <  1:1954459/150‑1 (MQ=255)
                                                                                      cGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTc                                                                <  2:2833634/150‑1 (MQ=255)
                                                                                          gACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAgg                                                            >  1:1674165/1‑150 (MQ=255)
                                                                                                  aagcaaATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATcc                                                    >  1:1738876/1‑150 (MQ=255)
                                                                                                   agcaaATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCcg                                                   <  1:4381296/150‑1 (MQ=255)
                                                                                                    gcaaATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCcgc                                                  >  1:1140372/1‑150 (MQ=255)
                                                                                                    gcaaATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCcgc                                                  >  1:2145470/1‑150 (MQ=255)
                                                                                                     caaATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCcgcg                                                 <  2:1807595/150‑1 (MQ=255)
                                                                                                     caaATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCcgcg                                                 >  2:877925/1‑150 (MQ=255)
                                                                                                     caaATCTGTGCCTTTGAACTCCACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCcgcg                                                 <  2:3383564/150‑1 (MQ=255)
                                                                                                      aaaTCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCgcgc                                                >  1:3315478/1‑150 (MQ=255)
                                                                                                        aTCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAg                                              <  2:2291376/150‑1 (MQ=255)
                                                                                                        aTCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAg                                              >  1:4443151/1‑150 (MQ=255)
                                                                                                         tCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGATTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGTCTTAATCCGCGCAgg                                             >  2:4549882/1‑150 (MQ=255)
                                                                                                          cTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGa                                            <  1:748893/150‑1 (MQ=255)
                                                                                                           tttGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGAt                                           >  1:3944667/1‑150 (MQ=255)
                                                                                                            ttGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATa                                          <  1:4289805/150‑1 (MQ=255)
                                                                                                             tGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAg                                         >  1:4653068/1‑150 (MQ=255)
                                                                                                                 tttGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCttt                                     <  1:4814955/150‑1 (MQ=255)
                                                                                                                  ttGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTa                                    <  2:1966128/150‑1 (MQ=255)
                                                                                                                  ttGAACTCAACCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTa                                    >  2:121110/1‑150 (MQ=255)
                                                                                                                     aaCTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCt                                 >  1:2422277/1‑150 (MQ=255)
                                                                                                                     aaCTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCt                                 <  2:2608097/150‑1 (MQ=255)
                                                                                                                        tCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTcc                              >  2:500993/1‑150 (MQ=255)
                                                                                                                        tCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTcc                              >  1:2328921/1‑150 (MQ=255)
                                                                                                                        tCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTcc                              >  2:667963/1‑150 (MQ=255)
                                                                                                                          aaCCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCAc                            <  2:4315852/150‑1 (MQ=255)
                                                                                                                          aaCCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCAc                            >  2:2138173/1‑150 (MQ=255)
                                                                                                                          aaCCGTGCCGCCCGTCACTTCATAATTTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTATTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCAc                            <  2:558523/150‑1 (MQ=255)
                                                                                                                             cGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCt                         <  1:2841217/150‑1 (MQ=255)
                                                                                                                              gTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTg                        >  1:406190/1‑150 (MQ=255)
                                                                                                                                    cccGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACgtgt                  >  1:2210566/1‑150 (MQ=255)
                                                                                                                                    cccGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACgtgt                  >  2:4244198/1‑150 (MQ=255)
                                                                                                                                          aCTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCt            <  1:3144211/150‑1 (MQ=255)
                                                                                                                                           cTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCtt           <  1:1022771/150‑1 (MQ=255)
                                                                                                                                             tCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTa         <  1:2959133/150‑1 (MQ=255)
                                                                                                                                             tCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTa         >  1:849312/1‑150 (MQ=255)
                                                                                                                                                 aaTCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTAATAc     >  1:677356/1‑150 (MQ=255)
                                                                                                                                                   tcttctCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTAATACtt   >  2:4790712/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GTTTGCAGGAAAAACTGGTTACTGACACCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCCGCGCGATCTTCCGGCGACAGCGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCTCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCCGAACCGTTTGGCCCCATAATGGCGTGAACTTCGCCGGGATGAACGTCGAGGCTTAATCCGCGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTAATACTTA  >  CP009273/1756468‑1756765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A