Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,101,664 C→A 24.4% Q49H (CAG→CAT)  glf ← UDP‑galactopyranose mutase, FAD/NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,101,6640CA24.4% 262.0 / 68.9 109Q49H (CAG→CAT) glfUDP‑galactopyranose mutase, FAD/NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base C (44/38);  new base A (12/15);  total (56/53)
Fisher's exact test for biased strand distribution p-value = 5.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 110 total aligned reads displayed.

ATATTAAAAGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTACATAAA  >  CP009273/2101521‑2101813
                                                                                                                                               |                                                                                                                                                     
atatTAAAAGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATa                                                                                                                                                 <  2:3464753/150‑1 (MQ=255)
atatTAAAAGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATa                                                                                                                                                 <  2:3463353/150‑1 (MQ=255)
   ttAAAAGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATAccc                                                                                                                                              >  2:3211816/1‑150 (MQ=255)
     aaaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTc                                                                                                                                            >  2:3819561/1‑150 (MQ=255)
     aaaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTc                                                                                                                                            >  2:3819521/1‑150 (MQ=255)
     aaaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTc                                                                                                                                            >  2:2604237/1‑150 (MQ=255)
      aaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTTGTATGAAAAATATGTGAACCATATTTATTAATATGTATACACTca                                                                                                                                           >  2:2540037/1‑150 (MQ=255)
      aaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTca                                                                                                                                           <  2:894348/150‑1 (MQ=255)
      aaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTca                                                                                                                                           <  1:779340/150‑1 (MQ=255)
      aaaGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTca                                                                                                                                           >  1:2438254/1‑150 (MQ=255)
        aggaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTcaca                                                                                                                                         >  2:2163511/1‑150 (MQ=255)
         ggaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAg                                                                                                                                        >  2:4874092/1‑150 (MQ=255)
         ggaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAg                                                                                                                                        >  2:2427127/1‑150 (MQ=255)
         ggaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAg                                                                                                                                        >  2:2292028/1‑150 (MQ=255)
         ggaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAg                                                                                                                                        <  2:3992045/150‑1 (MQ=255)
         ggaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAg                                                                                                                                        <  2:3992048/150‑1 (MQ=255)
          gaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGt                                                                                                                                       <  2:691023/150‑1 (MQ=255)
          gaaggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAAGTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGt                                                                                                                                       <  2:690554/150‑1 (MQ=255)
            aggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTcc                                                                                                                                     >  1:248154/1‑150 (MQ=255)
             ggTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCct                                                                                                                                    >  1:3466314/1‑150 (MQ=255)
                         tGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCAt                                                                                                                        >  1:1138089/1‑150 (MQ=255)
                            cTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTc                                                                                                                     >  1:225180/1‑150 (MQ=255)
                             tttATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTcc                                                                                                                    <  2:833601/150‑1 (MQ=255)
                              ttATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCa                                                                                                                   <  2:3150344/150‑1 (MQ=255)
                              ttATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCa                                                                                                                   <  2:3151245/150‑1 (MQ=255)
                              ttATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCa                                                                                                                   <  2:3151271/150‑1 (MQ=255)
                                ataAATCGCCAGTTGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCAcc                                                                                                                 <  2:3945479/150‑1 (MQ=255)
                                 taAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCg                                                                                                                >  2:3827493/1‑150 (MQ=255)
                                  aaaTCGCCAGTGGTGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGa                                                                                                               <  1:3743399/150‑1 (MQ=255)
                                  aaaTCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGa                                                                                                               <  1:3743425/150‑1 (MQ=255)
                                         cAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtt                                                                                                        <  1:4743965/150‑1 (MQ=255)
                                            tGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtttct                                                                                                     <  1:48790/150‑1 (MQ=255)
                                             ggAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtttctt                                                                                                    <  1:389910/150‑1 (MQ=255)
                                             ggAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtttctt                                                                                                    <  1:2817008/150‑1 (MQ=255)
                                             ggAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtttctt                                                                                                    <  1:2816992/150‑1 (MQ=255)
                                             ggAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtttctt                                                                                                    <  1:3826897/150‑1 (MQ=255)
                                               agaATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGAtttctttt                                                                                                  <  2:3747629/150‑1 (MQ=255)
                                                  aTTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTtctc                                                                                               >  2:4709880/1‑150 (MQ=255)
                                                  aTTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTtctc                                                                                               >  1:2669654/1‑150 (MQ=255)
                                                  aTTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTtctc                                                                                               >  1:2669638/1‑150 (MQ=255)
                                                   ttAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCa                                                                                              <  1:4112200/150‑1 (MQ=255)
                                                       tAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCa                                                                                          >  2:4262936/1‑150 (MQ=255)
                                                         aaaCGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACt                                                                                        >  1:4480433/1‑150 (MQ=255)
                                                              aTTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAAc                                                                                   >  1:1442739/1‑150 (MQ=255)
                                                              aTTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAAc                                                                                   >  1:4737942/1‑150 (MQ=255)
                                                               ttAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACt                                                                                  <  2:1902795/150‑1 (MQ=255)
                                                               ttAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACt                                                                                  <  1:4434344/150‑1 (MQ=255)
                                                               ttAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACt                                                                                  >  1:3236522/1‑150 (MQ=255)
                                                                     tCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTg                                                                            >  1:559192/1‑150 (MQ=255)
                                                                        actaAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGttt                                                                         <  2:2438254/150‑1 (MQ=255)
                                                                            aaTCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCt                                                                     <  2:2758098/150‑1 (MQ=255)
                                                                            aaTCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCt                                                                     >  1:712582/1‑150 (MQ=255)
                                                                            aaTCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCt                                                                     <  1:1792660/150‑1 (MQ=255)
                                                                            aaTCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCt                                                                     <  2:2277409/150‑1 (MQ=255)
                                                                              tCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCttt                                                                   <  2:3466314/150‑1 (MQ=255)
                                                                              tCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCttt                                                                   <  2:1268592/150‑1 (MQ=255)
                                                                               cATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCtttt                                                                  <  2:1738434/150‑1 (MQ=255)
                                                                               cATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCtttt                                                                  <  2:1736569/150‑1 (MQ=255)
                                                                                 ttAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCtttttt                                                                <  1:864521/150‑1 (MQ=255)
                                                                                 ttAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCtttttt                                                                <  1:864292/150‑1 (MQ=255)
                                                                                 ttAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCtttttt                                                                <  1:4500733/150‑1 (MQ=255)
                                                                                  tAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATCTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTa                                                               >  1:4074743/1‑150 (MQ=255)
                                                                                   aaCGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTaa                                                              >  2:4803307/1‑150 (MQ=255)
                                                                                     cGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACt                                                            >  1:4690995/1‑150 (MQ=255)
                                                                                          tCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTc                                                       <  1:2109727/150‑1 (MQ=255)
                                                                                          tCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTc                                                       <  1:1383504/150‑1 (MQ=255)
                                                                                          tCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTc                                                       <  1:1382458/150‑1 (MQ=255)
                                                                                           cccATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCg                                                      >  1:3578673/1‑150 (MQ=255)
                                                                                             cATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGca                                                    >  2:4349537/1‑150 (MQ=255)
                                                                                                      ttATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCa                                           >  2:3274161/1‑150 (MQ=255)
                                                                                                      ttATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCa                                           >  1:2956545/1‑150 (MQ=255)
                                                                                                       tATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCAc                                          >  2:1108111/1‑150 (MQ=255)
                                                                                                        aTCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCAcc                                         <  2:248154/150‑1 (MQ=255)
                                                                                                          cATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaa                                       <  1:2427127/150‑1 (MQ=255)
                                                                                                          cATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaa                                       >  2:4006143/1‑150 (MQ=255)
                                                                                                          cATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaa                                       <  1:4874092/150‑1 (MQ=255)
                                                                                                          cATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaa                                       >  2:1311665/1‑150 (MQ=255)
                                                                                                          cATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTATTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaa                                       <  1:2292028/150‑1 (MQ=255)
                                                                                                            ttGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaaac                                     <  1:3062725/150‑1 (MQ=255)
                                                                                                            ttGGTATGAAAAATATGTGCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATTTGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACcaaac                                     <  1:2163511/150‑1 (MQ=255)
                                                                                                                tATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCaaacaaac                                 >  1:2299991/1‑150 (MQ=255)
                                                                                                                 aTGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTTTTTAGCTTTTTTAACTAATTCGCACAAACGGCACCAAACAAAcc                                >  1:4475391/1‑150 (MQ=255)
                                                                                                                    aaaaaTATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGa                             >  2:2422556/1‑150 (MQ=255)
                                                                                                                         tatGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACcaa                        >  1:1168834/1‑150 (MQ=255)
                                                                                                                           tgtgCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACcaaca                      >  2:2331188/1‑150 (MQ=255)
                                                                                                                           tgtgCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACcaaca                      >  2:2613934/1‑150 (MQ=255)
                                                                                                                           tgtgCACCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACcaaca                      >  2:214073/1‑150 (MQ=255)
                                                                                                                                aCCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGat                 >  2:4675737/1‑150 (MQ=255)
                                                                                                                                aCCATATTTATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGat                 >  2:4675741/1‑150 (MQ=255)
                                                                                                                                  cATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGatat               >  2:143827/1‑150 (MQ=255)
                                                                                                                                  cATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGatat               >  2:143830/1‑150 (MQ=255)
                                                                                                                                     atTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAAt            >  2:1278797/1‑150 (MQ=255)
                                                                                                                                        tATGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGt         >  1:2632695/1‑150 (MQ=255)
                                                                                                                                         aTGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTa        <  1:4747910/150‑1 (MQ=255)
                                                                                                                                          tGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTAc       >  1:2373089/1‑150 (MQ=255)
                                                                                                                                          tGAATATGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTAc       >  2:888569/1‑150 (MQ=255)
                                                                                                                                           gAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTACa      >  1:356010/1‑150 (MQ=255)
                                                                                                                                            aaTCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTACAt     >  1:4583211/1‑150 (MQ=255)
                                                                                                                                             aTCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTACATa    >  1:2327637/1‑150 (MQ=255)
                                                                                                                                               cTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTACATaaa  >  1:2044530/1‑150 (MQ=255)
                                                                                                                                               |                                                                                                                                                     
ATATTAAAAGGAAGGTTGAATAATTTGTCTTTATAAATCGCCAGTGGAGAATTAGTAAAACGATTAAATTCTACTAAATCATTAACGTAATCCCATATATATTTATCATTGGTATGAAAAATATGTGCACCATATTTATGAATCTGGATACCCTCACAGTCCTCTGTGTACGCATTTCCACCGATATGATTTCTTTTCTCAATCACTAAAACTTTTTTGTTTAGCTTTTTTAACTCATTCGCACAAACGGCACCAAACAAACCAGAACCAACAATGATATAATCGTACATAAA  >  CP009273/2101521‑2101813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A