Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,447,977 G→T 24.7% pseudogene (504/2646 nt) yfcU ← pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,447,9770GT24.7% 664.4 / 191.4 277pseudogene (504/2646 nt)yfcUpseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base G (108/100);  new base T (38/31);  total (146/131)
Fisher's exact test for biased strand distribution p-value = 6.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 280 total aligned reads displayed.

TAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTACCATCGTG  >  CP009273/2447828‑2448126
                                                                                                                                                     |                                                                                                                                                     
  gTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTcc                                                                                                                                                     <  1:3148479/150‑1 (MQ=255)
   ttGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCca                                                                                                                                                    >  1:998447/1‑150 (MQ=255)
    tGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCcat                                                                                                                                                   >  2:4185910/1‑150 (MQ=255)
      gTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCcatca                                                                                                                                                 >  1:1021146/1‑150 (MQ=255)
        cTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCatcatc                                                                                                                                               >  1:2369168/1‑150 (MQ=255)
           ccAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCa                                                                                                                                            <  2:3682137/150‑1 (MQ=255)
               tCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACga                                                                                                                                        >  2:3258054/1‑150 (MQ=255)
               tCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACga                                                                                                                                        >  2:1893211/1‑150 (MQ=255)
                cAGCGCGCATCCGCCATGGCCCCAGGTTAACCCCGCCCGTCCCGGTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACgag                                                                                                                                       <  2:1931513/150‑1 (MQ=255)
                cAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACgag                                                                                                                                       >  2:2236411/1‑150 (MQ=255)
                      gcATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTg                                                                                                                                 >  1:3355418/1‑150 (MQ=255)
                       cATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTgg                                                                                                                                <  2:2782583/150‑1 (MQ=255)
                        aTACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCAGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGa                                                                                                                               >  1:69056/1‑150 (MQ=255)
                         tACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGAt                                                                                                                              >  1:1172318/1‑150 (MQ=255)
                         tACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGAt                                                                                                                              <  2:2689923/150‑1 (MQ=255)
                             ccATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCa                                                                                                                          <  2:2443964/150‑1 (MQ=255)
                              cATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAg                                                                                                                         <  2:2338312/150‑1 (MQ=255)
                                tGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTc                                                                                                                       >  2:664016/1‑150 (MQ=255)
                                     ccAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGcc                                                                                                                  >  2:114663/1‑150 (MQ=255)
                                        ggTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAgg                                                                                                               <  1:4304507/150‑1 (MQ=255)
                                         gTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGt                                                                                                              <  2:382310/150‑1 (MQ=255)
                                         gTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGt                                                                                                              <  2:1051137/150‑1 (MQ=255)
                                           tAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGtat                                                                                                            >  2:1969830/1‑150 (MQ=255)
                                                 cGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATTCTGTATTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAATGTGGATCACAGTCGGGCCAGGTATATTCGa                                                                                                      >  1:3253464/1‑150 (MQ=255)
                                                 cGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGa                                                                                                      >  1:2107373/1‑150 (MQ=255)
                                                  gACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAg                                                                                                     <  1:3088289/150‑1 (MQ=255)
                                                  gACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAg                                                                                                     <  1:3091032/150‑1 (MQ=255)
                                                     cGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTa                                                                                                  >  1:4557654/1‑150 (MQ=255)
                                                     cGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTa                                                                                                  >  2:1653852/1‑150 (MQ=255)
                                                       tCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAg                                                                                                <  1:284263/150‑1 (MQ=255)
                                                        cccGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGc                                                                                               <  1:2857240/150‑1 (MQ=255)
                                                         ccGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGcc                                                                                              <  1:3448220/150‑1 (MQ=255)
                                                         ccGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCGGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGcc                                                                                              >  2:2572478/1‑150 (MQ=255)
                                                            ttGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGc                                                                                           <  1:2912856/150‑1 (MQ=255)
                                                            ttGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGc                                                                                           <  1:2911724/150‑1 (MQ=255)
                                                              gCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCgg                                                                                         <  2:4590074/150‑1 (MQ=255)
                                                               ccGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTATTACCCGTGATGCTGGAGTCCGAAATGATCCCGGAGATGCCGTCGTCCCAGCGGGAGGGTGGATCCCGGTCGGGCCTGGGGTAGGCGAGGGGGGCCTGCGGt                                                                                        >  2:1508756/1‑150 (MQ=255)
                                                                  cTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGt                                                                                     <  2:3043308/150‑1 (MQ=255)
                                                                     aTCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGaa                                                                                  <  1:4127117/150‑1 (MQ=255)
                                                                       ctcGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAAt                                                                                <  2:2734042/150‑1 (MQ=255)
                                                                         cGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGACATGa                                                                              >  2:470296/1‑150 (MQ=255)
                                                                            tACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTa                                                                           >  2:4009253/1‑150 (MQ=255)
                                                                            tACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTa                                                                           >  2:4023376/1‑150 (MQ=255)
                                                                             aCTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTaa                                                                          <  2:274135/150‑1 (MQ=255)
                                                                              cTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAAt                                                                         <  2:2435897/150‑1 (MQ=255)
                                                                                gTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGc                                                                       >  1:3834872/1‑150 (MQ=255)
                                                                                  cATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCgg                                                                     >  2:2276010/1‑150 (MQ=255)
                                                                                    tCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGAc                                                                   <  1:2617135/150‑1 (MQ=255)
                                                                                     cgccgcCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACt                                                                  <  1:1873635/150‑1 (MQ=255)
                                                                                      gccgccATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTg                                                                 <  2:1173162/150‑1 (MQ=255)
                                                                                       ccgccATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTgg                                                                <  1:2503898/150‑1 (MQ=255)
                                                                                         gccATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCt                                                              >  2:294139/1‑150 (MQ=255)
                                                                                           cATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTa                                                            <  2:3626959/150‑1 (MQ=255)
                                                                                           cATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTa                                                            >  1:4431043/1‑150 (MQ=255)
                                                                                             ttttCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTaaa                                                          >  1:2261086/1‑150 (MQ=255)
                                                                                              tttCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAAt                                                         <  1:2706795/150‑1 (MQ=255)
                                                                                              tttCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAAt                                                         <  1:981236/150‑1 (MQ=255)
                                                                                               ttcttcGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATc                                                        >  1:1377739/1‑150 (MQ=255)
                                                                                                 cttcGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAg                                                      <  1:2258323/150‑1 (MQ=255)
                                                                                                 cttcGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAg                                                      <  1:4707674/150‑1 (MQ=255)
                                                                                                  ttcGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGc                                                     >  1:562197/1‑150 (MQ=255)
                                                                                                      tgtcgtgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTa                                                 >  1:3252353/1‑150 (MQ=255)
                                                                                                         cgtgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAAtt                                              >  1:847713/1‑150 (MQ=255)
                                                                                                         cgtgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAAtt                                              >  1:3916723/1‑150 (MQ=255)
                                                                                                          gtgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAAttt                                             <  1:2428564/150‑1 (MQ=255)
                                                                                                          gtgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAAttt                                             >  2:577918/1‑150 (MQ=255)
                                                                                                          gtgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAAttt                                             >  1:3679068/1‑150 (MQ=255)
                                                                                                           tgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTc                                            >  2:4196461/1‑150 (MQ=255)
                                                                                                           tgtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTc                                            <  1:1969830/150‑1 (MQ=255)
                                                                                                            gtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTcc                                           <  1:3477181/150‑1 (MQ=255)
                                                                                                            gtTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTcc                                           <  2:45449/150‑1 (MQ=255)
                                                                                                              ttGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCAc                                         >  1:583363/1‑150 (MQ=255)
                                                                                                                  gcAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCt                                     <  2:4720275/150‑1 (MQ=255)
                                                                                                                    aGTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTc                                   >  1:668965/1‑150 (MQ=255)
                                                                                                                    aGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTc                                   >  2:1711885/1‑150 (MQ=255)
                                                                                                                    aGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTc                                   >  2:851028/1‑150 (MQ=255)
                                                                                                                     gTGATGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTcc                                  <  2:3544777/150‑1 (MQ=255)
                                                                                                                     gTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTcc                                  <  1:4371879/150‑1 (MQ=255)
                                                                                                                     gTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTcc                                  <  1:206203/150‑1 (MQ=255)
                                                                                                                     gTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTcc                                  <  2:3852601/150‑1 (MQ=255)
                                                                                                                         tGCTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGtt                              >  2:340032/1‑150 (MQ=255)
                                                                                                                         tGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTCATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGtt                              >  2:3798141/1‑150 (MQ=255)
                                                                                                                           cTGTAGTCCGCAATGATCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGa                            <  1:176917/150‑1 (MQ=255)
                                                                                                                            tGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGAc                           >  2:3339480/1‑150 (MQ=255)
                                                                                                                             gTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGAcc                          <  2:1302321/150‑1 (MQ=255)
                                                                                                                               aGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCgg                        <  1:2208839/150‑1 (MQ=255)
                                                                                                                               aGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCgg                        <  2:3474724/150‑1 (MQ=255)
                                                                                                                               aGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCgg                        >  2:607767/1‑150 (MQ=255)
                                                                                                                                   cGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCtt                    <  2:2086689/150‑1 (MQ=255)
                                                                                                                                         gATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCa              >  2:483917/1‑150 (MQ=255)
                                                                                                                                          aTCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCAt             >  2:59384/1‑150 (MQ=255)
                                                                                                                                           tCCCGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCAtt            <  2:4350124/150‑1 (MQ=255)
                                                                                                                                           tCCCGGAGATGCCATCAGCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCAtt            <  1:421068/150‑1 (MQ=255)
                                                                                                                                             ccGGAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTa          >  1:4616537/1‑150 (MQ=255)
                                                                                                                                               ggAGATTCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTAcc        >  1:1654117/1‑150 (MQ=255)
                                                                                                                                               ggAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTAcc        >  1:2741621/1‑150 (MQ=255)
                                                                                                                                                 agaTGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTACCAt      >  1:1367051/1‑150 (MQ=255)
                                                                                                                                                  gaTGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTACCATc     >  1:2523320/1‑150 (MQ=255)
                                                                                                                                                    tGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTACCATCGt   >  1:775853/1‑150 (MQ=255)
                                                                                                                                                     gCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTACCATCGTg  <  2:3333073/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGATGCTGTAGTCCGCAATGATCCCGGAGATGCCATCATCCCAACGAGAAGGTGGATCCCAGTCGGGCCAGGTATATTCGAGGTAAGCCTGCGGTAGTGAAATGACTAATGCGGACTGGCTTAAATCAGCCTTAATTTCCACGCCTTCCAGTTGACCGGGCTTCAGGCATTTACCATCGTG  >  CP009273/2447828‑2448126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A