Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,462,531 G→A 23.4% G280E (GGA→GAA)  gtrB → CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,462,5310GA23.4% 234.4 / 75.9 122G280E (GGA→GAA) gtrBCPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase
Reads supporting (aligned to +/- strand):  ref base G (30/60);  new base A (10/18);  total (40/82)
Fisher's exact test for biased strand distribution p-value = 8.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-01

Only 100 of 123 total aligned reads displayed.

ATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTA  >  CP009273/2462382‑2462669
                                                                                                                                                     |                                                                                                                                          
atacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAgg                                                                                                                                            <  1:3431922/150‑1 (MQ=255)
 tacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGa                                                                                                                                           <  2:4806481/150‑1 (MQ=255)
 tacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGa                                                                                                                                           <  1:252502/150‑1 (MQ=255)
   cataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGt                                                                                                                                         <  2:2362627/150‑1 (MQ=255)
   cataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGt                                                                                                                                         <  2:4447153/150‑1 (MQ=255)
   cataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGt                                                                                                                                         <  2:4447303/150‑1 (MQ=255)
    ataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTa                                                                                                                                        >  2:3047027/1‑150 (MQ=255)
    ataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTa                                                                                                                                        >  1:3195836/1‑150 (MQ=255)
    ataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTa                                                                                                                                        <  2:4716528/150‑1 (MQ=255)
    ataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTa                                                                                                                                        <  2:2003237/150‑1 (MQ=255)
       gggTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTa                                                                                                                                     <  1:307763/150‑1 (MQ=255)
          ttAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGt                                                                                                                                  <  1:2813359/150‑1 (MQ=255)
           tAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTg                                                                                                                                 <  2:4599829/150‑1 (MQ=255)
            aGTTGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATACTTCACTACTTGTTTCAATACTGTTTTTAGGTTGAATTCAGATGATTGGAATAGGAGTATTAGGTGa                                                                                                                                <  2:418369/150‑1 (MQ=255)
            aGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGa                                                                                                                                <  2:1393216/150‑1 (MQ=255)
             gTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGaa                                                                                                                               <  2:2209662/150‑1 (MQ=255)
              tGGTAGCCAGTGTAGAATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAat                                                                                                                              <  2:4512208/150‑1 (MQ=255)
               ggTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAata                                                                                                                             <  1:1717313/150‑1 (MQ=255)
                gTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAatat                                                                                                                            <  2:4197808/150‑1 (MQ=255)
                 tAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAatata                                                                                                                           <  2:4003584/150‑1 (MQ=255)
                 tAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAatata                                                                                                                           <  2:4002214/150‑1 (MQ=255)
                 tAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAatata                                                                                                                           <  2:4875466/150‑1 (MQ=255)
                   gCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATAtt                                                                                                                         <  2:1056427/150‑1 (MQ=255)
                   gCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATAtt                                                                                                                         <  1:3056920/150‑1 (MQ=255)
                     cAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTgg                                                                                                                       <  1:3840249/150‑1 (MQ=255)
                         gtAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGc                                                                                                                   >  2:1482144/1‑150 (MQ=255)
                         gtAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGc                                                                                                                   >  1:4751947/1‑150 (MQ=255)
                          tAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGca                                                                                                                  <  2:1793307/150‑1 (MQ=255)
                            gCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGcaca                                                                                                                <  1:4034810/150‑1 (MQ=255)
                               tttatttaTGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCacatac                                                                                                             <  1:3897459/150‑1 (MQ=255)
                                     tatGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGaa                                                                                                       >  1:3790509/1‑150 (MQ=255)
                                     tatGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGaa                                                                                                       <  2:2899819/150‑1 (MQ=255)
                                     tatGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGaa                                                                                                       <  2:1333256/150‑1 (MQ=255)
                                       tGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAAc                                                                                                     >  2:4418873/1‑150 (MQ=255)
                                        ggggCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAAcc                                                                                                    <  1:3102090/150‑1 (MQ=255)
                                        ggggCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAAcc                                                                                                    <  1:3102787/150‑1 (MQ=255)
                                            cGTGGATTATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCaaaa                                                                                                <  2:4219116/150‑1 (MQ=255)
                                            cGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCaaaa                                                                                                <  2:4219321/150‑1 (MQ=255)
                                             gTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCaaaaa                                                                                               >  2:1022249/1‑150 (MQ=255)
                                               ggATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAAc                                                                                             >  2:1727313/1‑150 (MQ=255)
                                                gatgatTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACg                                                                                            <  1:2135679/150‑1 (MQ=255)
                                                     ttttATATAATATCATTTTTTTAATTGTTTTTTGGGTATATCATTCACTAATTGTTTAAATACTTTTTTTTGGTGTATTTCATTTGATTGTAATAGGTGTTTTTGGTTAATATATTGGACCCACATACATTGAAACCAAAAAACGCCCGa                                                                                       <  2:1257795/150‑1 (MQ=255)
                                                           aTACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATAca                                                                                 <  2:1069251/150‑1 (MQ=255)
                                                              cTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGTAATTCAGATGTTTGGAATAGGTGTATTAGGTGAATATATTGGACGCAAATACATTGAAACCAAAAAACGCCCGAAATAcatca                                                                              <  1:4051514/150‑1 (MQ=255)
                                                               tatattttttGTAATTGCTTTTTGGGGATATCCTTAAATACTTTTTTAAATACTTTTTTTTGGTGTAATTAAGTTTTTTGTAATTGTTTTTTTTGTTTAATATTTTGGACGCAAATAAATTGAAACAAAAAAACGCCCGAAATAcatcat                                                                             <  1:2490087/143‑1 (MQ=255)
                                                               tATCTTTTTTGTAATTGGTTTTCGGGGATATCCTTAAATATTTGTTTAAATACTTTTTTTAGGTGTAATTATGTTTTTTGTATTTGGATTATTAGGTTATTTTATGGGACGCAAATAAATTGAAACCAAAAAACGCCCGAAATAcatcat                                                                             <  1:2490420/150‑1 (MQ=255)
                                                               tATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATAcatcat                                                                             >  1:4387957/1‑150 (MQ=255)
                                                                  cATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCaa                                                                          >  2:2715961/1‑150 (MQ=255)
                                                                  cATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCaa                                                                          >  2:2439775/1‑150 (MQ=255)
                                                                   atatTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAag                                                                         >  1:1848655/1‑150 (MQ=255)
                                                                   atatTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAag                                                                         >  1:1155024/1‑150 (MQ=255)
                                                                       ttGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAagagag                                                                     <  2:3885132/150‑1 (MQ=255)
                                                                        tGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGt                                                                    >  2:1465304/1‑150 (MQ=255)
                                                                        tGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGt                                                                    >  2:1465308/1‑150 (MQ=255)
                                                                            attggtGTTAGGTGATATCCTTCAATATTTTTTTCATTAGTGTTTTTCGGTGTATTTCTTATGATTGTAATAGGTTTTTTTGGTTAATATATTGGACGCAAATAAATTTAAACAAAAAAACGCCCGAAATACATCATCAAGAGAGTCaaa                                                                <  1:3772984/145‑1 (MQ=255)
                                                                            attGCTTTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTTGGTGGAATTCTGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCaaa                                                                <  1:4844588/148‑1 (MQ=255)
                                                                             aTGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCaaaa                                                               >  1:4216572/1‑150 (MQ=255)
                                                                             aTGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCaaaa                                                               >  2:2986482/1‑150 (MQ=255)
                                                                                  gTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGa                                                          >  2:1753334/1‑150 (MQ=255)
                                                                                  gTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGa                                                          >  2:635192/1‑150 (MQ=255)
                                                                                    tAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAAt                                                        <  2:2825862/150‑1 (MQ=255)
                                                                                     aGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACAAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATa                                                       <  1:320013/150‑1 (MQ=255)
                                                                                         gATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGc                                                   <  2:4787994/150‑1 (MQ=255)
                                                                                          atatCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCa                                                  >  1:769272/1‑150 (MQ=255)
                                                                                            atCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAAt                                                <  2:1841444/150‑1 (MQ=255)
                                                                                                 tCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAg                                           >  1:4253308/1‑150 (MQ=255)
                                                                                                 tCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAg                                           <  2:1795388/150‑1 (MQ=255)
                                                                                                 tCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAg                                           <  2:1171513/150‑1 (MQ=255)
                                                                                                   actactTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTa                                         <  2:697223/150‑1 (MQ=255)
                                                                                                     tactTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATc                                       >  2:2772058/1‑150 (MQ=255)
                                                                                                       ctTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCAt                                     >  1:171883/1‑150 (MQ=255)
                                                                                                       ctTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCAt                                     >  1:2856529/1‑150 (MQ=255)
                                                                                                         tGTTTCAATACTGTTTTTAGGTGTAATTCAGATGATTGTAATAGGAGTATTTGTTGAATATATTGGACGCAAATAAATTGAAACAAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTg                                   <  1:2640105/150‑1 (MQ=255)
                                                                                                          gTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGt                                  >  1:1953154/1‑150 (MQ=255)
                                                                                                           tttCAATACTGTTTTTAGGTGGATTTCAGATGTTTGTAATATAAGTATTAGGTGAATATATTGGACGAACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGta                                 <  1:1482144/150‑1 (MQ=255)
                                                                                                             tCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtata                               >  2:2894236/1‑150 (MQ=255)
                                                                                                             tCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtata                               >  2:3547700/1‑150 (MQ=255)
                                                                                                               aaTACTGTTTTTTGGTGGAATTAAGATGTTTGTAATATAAGTATTAGGTGAATATATTGGACGAAAATAAATTCAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtatata                             <  1:1738431/150‑1 (MQ=255)
                                                                                                                aTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTatatat                            >  2:3863972/1‑150 (MQ=255)
                                                                                                                aTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTatatat                            <  2:1785796/150‑1 (MQ=255)
                                                                                                                 tACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGATTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATc                           <  2:2744102/150‑1 (MQ=255)
                                                                                                                  aCTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCt                          >  1:3491238/1‑150 (MQ=255)
                                                                                                                  aCTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCt                          >  2:1467830/1‑150 (MQ=255)
                                                                                                                     gTTTTTAGGTGGAATTCAGATGATTGGAATAGGATTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCtttt                       <  1:3098231/150‑1 (MQ=255)
                                                                                                                      tttttAGGTGGAATTCAGATGATTGGAATAGAAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttg                      <  2:2375247/150‑1 (MQ=255)
                                                                                                                       ttttAGGTGTAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgt                     <  1:235500/150‑1 (MQ=255)
                                                                                                                       ttttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGGATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgt                     >  1:2498984/1‑150 (MQ=255)
                                                                                                                       ttttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgt                     <  1:2668174/150‑1 (MQ=255)
                                                                                                                       ttttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgt                     >  1:2499125/1‑150 (MQ=255)
                                                                                                                         tttggTGTATTTCAGTGGTTTGTAATATGTTTATTTGGTGAATATATTGGACGCACATACATTGAAACAAAAACACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATTttttgttt                   <  1:4592204/147‑1 (MQ=255)
                                                                                                                         ttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgttt                   >  2:2581231/1‑150 (MQ=255)
                                                                                                                         ttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgttt                   >  2:2580880/1‑150 (MQ=255)
                                                                                                                          tAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgtttt                  <  2:578341/150‑1 (MQ=255)
                                                                                                                          gaGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGTACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCttttgtttt                  <  2:578937/149‑1 (MQ=255)
                                                                                                                              tgtaaTTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGatt              <  2:3313200/147‑1 (MQ=255)
                                                                                                                              tGGAATTCTGATGTTTGTAATAGTATTATTAGGTGAATATATTGGACGCACATACATTGAAACAAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGatt              <  2:3312445/150‑1 (MQ=255)
                                                                                                                              tGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTCTCATTGTATATATCTTTTGTTTTGatt              >  2:3276186/1‑150 (MQ=255)
                                                                                                                              tGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGatt              >  2:3276187/1‑150 (MQ=255)
                                                                                                                                  aTTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTAttt          <  2:1387179/150‑1 (MQ=255)
                                                                                                                                          gatTGGAATTGGAGTATTAGGTGAATATATTGCACGCACATACATTGAAACCAAAACACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTa  <  1:4560445/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                          
ATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTA  >  CP009273/2462382‑2462669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A