Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,793,412 G→T 31.4% intergenic (‑59/‑93) ygaC ← / → ygaM uncharacterized protein/DUF883 family protein, putative membrane‑anchored ribosome‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,793,4120GT31.4% 375.2 / 167.1 206intergenic (‑59/‑93)ygaC/ygaMuncharacterized protein/DUF883 family protein, putative membrane‑anchored ribosome‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (75/65);  new base T (33/33);  total (108/98)
Fisher's exact test for biased strand distribution p-value = 6.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 210 total aligned reads displayed.

GGCGGTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGATATCCAGAAT  >  CP009273/2793263‑2793561
                                                                                                                                                     |                                                                                                                                                     
ggcggTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACg                                                                                                                                                       <  2:4074943/150‑1 (MQ=255)
   ggTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCtt                                                                                                                                                    >  2:2536562/1‑150 (MQ=255)
   ggTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCtt                                                                                                                                                    >  2:827060/1‑150 (MQ=255)
    gTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCttt                                                                                                                                                   <  2:3035608/150‑1 (MQ=255)
    gTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCttt                                                                                                                                                   <  1:2577858/150‑1 (MQ=255)
        ccATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGa                                                                                                                                               <  1:4167191/150‑1 (MQ=255)
         cATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGaa                                                                                                                                              >  1:3601208/1‑150 (MQ=255)
              gCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTc                                                                                                                                         >  2:3490222/1‑150 (MQ=255)
                tttCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTcaa                                                                                                                                       >  2:2617880/1‑148 (MQ=255)
                tttCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCa                                                                                                                                       >  2:4353771/1‑150 (MQ=255)
                 ttCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCAt                                                                                                                                      <  1:1936173/150‑1 (MQ=255)
                  tCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATa                                                                                                                                     >  1:226947/1‑150 (MQ=255)
                  tCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATa                                                                                                                                     <  1:2306034/150‑1 (MQ=255)
                  tCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATa                                                                                                                                     <  1:3081836/150‑1 (MQ=255)
                      ggTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGc                                                                                                                                 <  2:56099/150‑1 (MQ=255)
                       gTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGcc                                                                                                                                <  2:510896/150‑1 (MQ=255)
                          aCCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCcgcg                                                                                                                             >  1:1768499/1‑150 (MQ=255)
                           ccACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGa                                                                                                                            >  2:1945982/1‑150 (MQ=255)
                           ccACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGa                                                                                                                            >  2:3522334/1‑150 (MQ=255)
                           ccACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGa                                                                                                                            >  2:1413796/1‑150 (MQ=255)
                             acaTCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATg                                                                                                                          <  2:2390885/150‑1 (MQ=255)
                                 cGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAAcc                                                                                                                      <  1:953734/150‑1 (MQ=255)
                                     aGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCTTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACCACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAg                                                                                                                  <  1:4078964/150‑1 (MQ=255)
                                     aGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAACGCCGCGATGAACCTCAg                                                                                                                  >  2:3251601/1‑150 (MQ=255)
                                       tAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGtt                                                                                                                <  2:2131390/150‑1 (MQ=255)
                                       tAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGtt                                                                                                                <  2:2295357/150‑1 (MQ=255)
                                         aaaCCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTaa                                                                                                              >  2:3736780/1‑150 (MQ=255)
                                           aCCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGa                                                                                                            <  2:756649/150‑1 (MQ=255)
                                            ccGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGaa                                                                                                           >  1:3927482/1‑150 (MQ=255)
                                             cGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACATCAGTTAAGaaa                                                                                                          >  1:3366734/1‑150 (MQ=255)
                                              gACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGaaaa                                                                                                         <  1:3403042/150‑1 (MQ=255)
                                                    ttCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATgg                                                                                                   >  2:4176052/1‑150 (MQ=255)
                                                    ttCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATgg                                                                                                   >  2:674214/1‑150 (MQ=255)
                                                       aaGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCt                                                                                                <  2:4254035/150‑1 (MQ=255)
                                                       aaGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCt                                                                                                >  2:729170/1‑150 (MQ=255)
                                                               gcgcCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGaa                                                                                        <  2:4011891/150‑1 (MQ=255)
                                                                cgcCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGaaa                                                                                       >  1:1718912/1‑150 (MQ=255)
                                                                cgcCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGaaa                                                                                       <  2:4092869/150‑1 (MQ=255)
                                                                   cACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAAtt                                                                                    >  2:1564469/1‑150 (MQ=255)
                                                                   cACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAAtt                                                                                    <  1:3196090/150‑1 (MQ=255)
                                                                    aCCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTa                                                                                   >  1:304014/1‑150 (MQ=255)
                                                                     ccTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTAc                                                                                  <  1:4014532/150‑1 (MQ=255)
                                                                      cTCGTCTGGTCTTAAATACATATTTGATCCTCTTTATTATAAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACa                                                                                 <  1:456245/150‑1 (MQ=255)
                                                                      cTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGAGTGCGCATTCACCACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACa                                                                                 <  1:3719640/150‑1 (MQ=255)
                                                                       tCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACAt                                                                                >  2:813037/1‑150 (MQ=255)
                                                                            tGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTCCCTGTTTGCGCATTCACAACTCTTTCAGAAACGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAAt                                                                           <  1:1239040/150‑1 (MQ=255)
                                                                            tGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCAGTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAAt                                                                           <  2:2451868/150‑1 (MQ=255)
                                                                             ggTCGTAATTACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTAAAGAAAAATATGGACTACACTGAAAATTACATCGAAta                                                                          >  2:2495363/1‑149 (MQ=255)
                                                                                cGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTa                                                                       >  2:1699260/1‑150 (MQ=255)
                                                                                cGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTa                                                                       <  1:547684/150‑1 (MQ=255)
                                                                                  tAAATACATATTTGATCCTCGTTATTAACAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAAt                                                                     <  1:1039982/150‑1 (MQ=255)
                                                                                   aaaTACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATg                                                                    >  1:1839742/1‑150 (MQ=255)
                                                                                      tACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATgggg                                                                 >  1:279443/1‑150 (MQ=255)
                                                                                         atatTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGAt                                                              >  1:1330335/1‑150 (MQ=255)
                                                                                          tatTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATc                                                             >  1:565008/1‑150 (MQ=255)
                                                                                             ttGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCata                                                          <  1:4367437/150‑1 (MQ=255)
                                                                                                aTCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGt                                                       <  1:201738/150‑1 (MQ=255)
                                                                                                 tCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGtt                                                      >  1:4320770/1‑150 (MQ=255)
                                                                                                 tCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGtt                                                      >  1:2398269/1‑150 (MQ=255)
                                                                                                 tCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGtt                                                      >  1:3165651/1‑150 (MQ=255)
                                                                                                   cTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTa                                                    >  2:3845665/1‑150 (MQ=255)
                                                                                                   cTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTa                                                    <  1:2735664/150‑1 (MQ=255)
                                                                                                      gTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAacc                                                 >  1:2237665/1‑150 (MQ=255)
                                                                                                      gTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAacc                                                 >  1:2031094/1‑150 (MQ=255)
                                                                                                      gTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAacc                                                 <  2:1816881/150‑1 (MQ=255)
                                                                                                        tattatCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAaccga                                               <  2:3393843/150‑1 (MQ=255)
                                                                                                        tattatCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAaccga                                               >  2:1743480/1‑150 (MQ=255)
                                                                                                         attatCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAaccgac                                              >  2:101372/1‑150 (MQ=255)
                                                                                                         attatCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAaccgac                                              <  2:4580690/150‑1 (MQ=255)
                                                                                                         attatCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAaccgac                                              >  1:3239092/1‑150 (MQ=255)
                                                                                                           tatCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAaccgaccg                                            <  2:1349841/150‑1 (MQ=255)
                                                                                                             tCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGaa                                          >  2:3618888/1‑150 (MQ=255)
                                                                                                             tCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGaa                                          >  2:2395478/1‑150 (MQ=255)
                                                                                                              cAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAAc                                         <  1:2536562/150‑1 (MQ=255)
                                                                                                              cAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAAc                                         >  2:4414976/1‑150 (MQ=255)
                                                                                                               aaCCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAAcc                                        <  2:1133229/150‑1 (MQ=255)
                                                                                                               aaCCGCGGGCCTACCTTACCTGATTGCGCAGTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAAcc                                        <  2:1132108/150‑1 (MQ=255)
                                                                                                                aCCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCg                                       <  1:757745/150‑1 (MQ=255)
                                                                                                                  cgcgGGCCTACCTTCCCTGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCa                                     <  2:4210651/150‑1 (MQ=255)
                                                                                                                  cgcgGGCCTACCTTACCTGTTTGCGCATTCACAACGCTTTCAGAAACGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCa                                     <  1:2909738/150‑1 (MQ=255)
                                                                                                                  cgcgGGCCTACCTTACCTGATTCCGCACTCACAACTCTTACAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTATACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCa                                     <  2:4210664/150‑1 (MQ=255)
                                                                                                                     gggCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAacg                                  >  2:875696/1‑150 (MQ=255)
                                                                                                                     gggCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAacg                                  >  1:2263913/1‑150 (MQ=255)
                                                                                                                     gggCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAacg                                  >  1:4715544/1‑150 (MQ=255)
                                                                                                                         cTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGt                              >  2:1055633/1‑150 (MQ=255)
                                                                                                                             cttacctGATTGCGCATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTtgat                          >  2:1085341/1‑150 (MQ=255)
                                                                                                                                acctGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTgatgat                       >  2:600322/1‑150 (MQ=255)
                                                                                                                                acctGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTgatgat                       >  2:20170/1‑150 (MQ=255)
                                                                                                                                 cctGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGatgatg                      <  2:779572/150‑1 (MQ=255)
                                                                                                                                   tGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGc                    >  2:4491533/1‑150 (MQ=255)
                                                                                                                                   tGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGc                    >  2:1715796/1‑150 (MQ=255)
                                                                                                                                       tGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGc                <  1:1000436/150‑1 (MQ=255)
                                                                                                                                          gcATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAgg             <  2:226888/150‑1 (MQ=255)
                                                                                                                                          gcATTCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAgg             <  2:226961/150‑1 (MQ=255)
                                                                                                                                             ttCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTACTGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGata          <  2:3535023/150‑1 (MQ=255)
                                                                                                                                              tCACAACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGatat         >  2:1029633/1‑150 (MQ=255)
                                                                                                                                              tCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGatat         >  2:3173509/1‑150 (MQ=255)
                                                                                                                                               cacaACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGATATc        >  1:4460460/1‑150 (MQ=255)
                                                                                                                                                 caACTCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGATATCCa      <  2:1229027/150‑1 (MQ=255)
                                                                                                                                                     gCTTTCATAAAAGTCCATAACGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTTAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGATATCCAGAat  <  1:853587/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GGCGGTAACCATACGCTTTCTGGGTTACCACATCGACAGTAAAACCGACTTTTTCAAGTACGCGCGCCACCTCGTCTGGTCGTAAATACATATTTGATCCTCGTTATTATCAACCGCGGGCCTACCTTACCTGATTGCGCATTCACAACGCTTTCAGAAAAGTCCATAAAGCCGCGATGAACCTCAGTTAAGAAAATTATGGTCTACACTGAAAATTACATCGAATTCTAATGGGGGATCATATGTTTAACCGACCGAACCGCAACGACGTTGATGATGGCGTGCAGGATATCCAGAAT  >  CP009273/2793263‑2793561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A