Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
254 |
498.2 |
21552474 |
99.3% |
21401606 |
151.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_008463 |
2,545,633 |
2 bp→CT |
coding (1551‑1552/2070 nt) |
tssI → |
type VI secretion system tip protein TssI/VgrG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_008463 | 2,545,633 | 0 | T | C | 99.2%
| 447.3
/ ‑6.4
| 120 | H517H (CAT→CAC) | tssI | type VI secretion system tip protein TssI/VgrG |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (36/83); total (36/84) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_008463 | 2,545,634 | 0 | C | T | 99.2%
| 478.4
/ ‑4.5
| 120 | R518W (CGG→TGG) | tssI | type VI secretion system tip protein TssI/VgrG |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (36/83); total (36/84) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 |
Only 100 of 120 total aligned reads displayed.
CCGAGAGGAACCAGGACATTGAGGTTGAGAACGACGAGAGCCATCGGG‑TCGGCCACGACCGGACCAAGACCATTGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCA > NC_008463/2545590‑2545778
||
ccGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGc < 1:6889292/151‑1 (MQ=255)
ccGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGc > 2:692078/1‑151 (MQ=255)
ccGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGc < 2:1762099/151‑1 (MQ=255)
ccGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGc < 2:5977112/151‑1 (MQ=255)
cGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGcc < 2:1539676/151‑1 (MQ=255)
cGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGcc < 2:5397233/151‑1 (MQ=255)
cGAGAGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGca > 1:3253081/1‑150 (MQ=11)
gagaGGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCa > 2:3686773/1‑151 (MQ=255)
agagGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCaa > 2:6917274/1‑151 (MQ=255)
agagGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCaa < 1:5156624/151‑1 (MQ=255)
agagGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGAACGTGGACAACTACGAGACCATCACCGTGCATGCCaa < 2:9770788/151‑1 (MQ=11)
gagGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAAc < 1:4807806/151‑1 (MQ=255)
agGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAAcc < 1:2427230/151‑1 (MQ=255)
agGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAAcc < 1:1942608/151‑1 (MQ=255)
agGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAAcc < 2:5151483/151‑1 (MQ=255)
ggAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCg < 1:2448541/151‑1 (MQ=255)
ggAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCg < 1:7331022/151‑1 (MQ=255)
aaCCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgca < 2:5556596/151‑1 (MQ=255)
aaCCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgca < 1:1173533/151‑1 (MQ=255)
aaCCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgca < 2:4976197/151‑1 (MQ=255)
aaCCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgca < 2:7870635/151‑1 (MQ=255)
aCCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcag < 2:10059541/151‑1 (MQ=255)
aCCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcag < 2:4634964/151‑1 (MQ=255)
ccAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACCACAACGAGACCATCACCGAGCATGCCAACCgcagc > 2:5523216/1‑151 (MQ=11)
ccAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcagc > 1:6657829/1‑151 (MQ=255)
ccAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcagc > 1:4991711/1‑151 (MQ=255)
ccAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcagc > 2:6244849/1‑151 (MQ=255)
ccAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcagc < 2:155001/151‑1 (MQ=255)
cAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCgcagca < 1:7146615/151‑1 (MQ=255)
aGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCaa < 2:9515237/151‑1 (MQ=255)
aGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCaa > 1:8182734/1‑151 (MQ=255)
aGGACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCaa > 2:8320294/1‑151 (MQ=255)
ggACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAg > 1:8371231/1‑151 (MQ=255)
ggACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAg > 1:6165970/1‑151 (MQ=255)
gACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGa > 2:4245580/1‑151 (MQ=255)
gACATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGa > 1:9058840/1‑151 (MQ=255)
aCATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGAc < 2:9490749/151‑1 (MQ=255)
aCATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGAc < 1:3898035/151‑1 (MQ=255)
aCATCGAGGTCGAGAACGACGAGAGCCACTGGG‑ACGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGAc < 2:9490574/151‑1 (MQ=14)
cATCGAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACg < 1:9729208/151‑1 (MQ=255)
tcgcggTCGAGCACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGCTCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGt < 2:3484237/147‑1 (MQ=14)
tcgAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGt < 2:6116890/149‑1 (MQ=255)
cgAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTc > 1:7559060/2‑151 (MQ=255)
cgAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTc < 1:1406363/150‑1 (MQ=255)
gAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCCTCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCg < 2:7704776/151‑1 (MQ=255)
gAGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCg < 2:923230/151‑1 (MQ=255)
aGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGa < 1:5608089/151‑1 (MQ=255)
aGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGa < 2:9120093/151‑1 (MQ=255)
aGGTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGa < 2:9120128/151‑1 (MQ=255)
ggTCGAGAACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAc < 1:7593308/151‑1 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc < 2:4611565/148‑1 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc < 2:5011910/148‑1 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc < 1:7732194/148‑1 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc > 1:8948161/4‑151 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc < 2:8686819/148‑1 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc < 2:8693031/148‑1 (MQ=255)
gtcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGAcc < 1:9853959/148‑1 (MQ=255)
tcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCg < 2:485059/149‑1 (MQ=255)
tcgagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCg < 2:484998/149‑1 (MQ=255)
gcgagcACGACGAGAGCCACTGGG‑CCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGCAGCACGATCGCACCGAGACCGTGGACCACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCg < 2:9047705/149‑1 (MQ=17)
gagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCa > 2:9213751/1‑151 (MQ=255)
gagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCa < 2:7293437/151‑1 (MQ=255)
gagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCa < 1:5182807/151‑1 (MQ=255)
gagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCa > 2:1630611/1‑151 (MQ=255)
gagaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCa < 2:5665728/151‑1 (MQ=255)
agaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCaa > 2:3385661/1‑151 (MQ=255)
gaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAAc < 1:6105402/151‑1 (MQ=255)
gaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAAc < 1:9170106/151‑1 (MQ=255)
gaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAAc < 1:9170297/151‑1 (MQ=255)
gaACGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAAc < 2:6086141/151‑1 (MQ=255)
gaACGACGAGAGCCACTGGA‑TCGGCCACGACCGGACCAAGACCTTCGTCCACGACGAGTCGGTGCATGTGAAGCACGATCGCACCGAGTCCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCTAc < 1:6138511/151‑1 (MQ=17)
aaCGACGAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACg < 2:10657387/151‑1 (MQ=255)
acgacgAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACga > 1:2823160/1‑151 (MQ=255)
acgacgAGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACga > 2:10460382/1‑151 (MQ=255)
cgacgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgag > 2:9576556/1‑151 (MQ=255)
cgacgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgag < 1:203817/151‑1 (MQ=255)
cgacgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgag < 2:8068100/151‑1 (MQ=255)
gacgaGAGCCACTGGG‑TCGGCCCCGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgaga > 2:2111239/1‑151 (MQ=255)
gacgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgaga > 1:7913006/1‑151 (MQ=255)
gacgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgaga > 2:10406546/1‑151 (MQ=255)
gacgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACgaga < 1:1277981/151‑1 (MQ=255)
acgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGAc > 2:8671943/1‑151 (MQ=255)
acgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGAc < 1:10598271/151‑1 (MQ=255)
acgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGAc < 2:3751192/151‑1 (MQ=255)
acgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGAc > 1:410709/1‑151 (MQ=255)
acgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGAc < 1:1524700/151‑1 (MQ=255)
cgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACg > 1:9222904/1‑151 (MQ=255)
cgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACg < 1:7964173/151‑1 (MQ=255)
cgaGAGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACg < 2:6555096/151‑1 (MQ=255)
cgaGAGCC‑TCGGGCTCGGCCACGACCGGACAAAGACCATCGACCACGACGAGACGGTTCATGTTTAGCTCGATAGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACg < 2:5807202/151‑1 (MQ=18)
gagaGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACgg < 1:4018786/151‑1 (MQ=255)
gagaGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACgg < 2:4870345/151‑1 (MQ=255)
gagaGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACgg > 2:9142448/1‑151 (MQ=255)
gagaGCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACgg > 1:7446135/1‑151 (MQ=255)
gagCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTc < 2:4238089/151‑1 (MQ=255)
agCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCa < 2:7999400/151‑1 (MQ=255)
agCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCa < 2:8989438/151‑1 (MQ=255)
agCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCa < 1:4188882/151‑1 (MQ=255)
agCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCa < 2:7037748/151‑1 (MQ=255)
agCCACTGGG‑TCGGCCACGACCGGACCAAGACCATCGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCa < 2:3590500/151‑1 (MQ=255)
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CCGAGAGGAACCAGGACATTGAGGTTGAGAACGACGAGAGCCATCGGG‑TCGGCCACGACCGGACCAAGACCATTGACCACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCA > NC_008463/2545590‑2545778
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
