Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I1 R1
|
7 |
307.5 |
8270622 |
98.3% |
8130021 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AP012306 |
3,400,266 |
Δ554 bp |
|
[rffE]–[rffD] |
[rffE], [rffD] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AP012306 |
3400266 |
3400819 |
554 |
331 [0] |
[0] 331 |
[rffE]–[rffD] |
[rffE],[rffD] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AP012306 |
= 3400265 | 0 (0.000) | 305 (1.070) |
170/280 |
0.3 |
100% |
coding (920/1131 nt) |
rffE |
UDP‑N‑acetyl glucosamine‑2‑epimerase |
| ? | AP012306 |
3400820 = |
0 (0.000) | coding (348/1263 nt) |
rffD |
UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
GATK/CNVnator alignment
N/A
