Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
550,033 |
A→G |
14.3% |
E136G (GAG→GGG) |
ylbF → |
putative anaerobic allantoin catabolic oxamate carbamoyltransferase, DUF2877 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 550,033 | 0 | A | G | 14.3%
| 178.5
/ 2.9
| 79 | E136G (GAG→GGG) | ylbF | putative anaerobic allantoin catabolic oxamate carbamoyltransferase, DUF2877 family protein |
| Reads supporting (aligned to +/- strand): ref base A (31/33); new base G (5/7); total (39/40) |
| Fisher's exact test for biased strand distribution p-value = 7.59e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 |
TGCGCAATTCGATGCGTTATGCGGTGGATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTCAGTTAT > NC_000913/549800‑550262
|
tGCGCAATTCGATGCGTTATGCGGTGGATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGAACCGCTGCCTGCT‑GGGTTa > 1:406373/1‑238 (MQ=255)
ggcAATTCGGTTGGTGATGCGGTGGATTATGCGGAAATGAACGACCACAGGTGGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACg < 1:864997/237‑1 (MQ=255)
tGCGTTATGCGGTGGATTATGCGGCAATGAACGCCCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGCGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCCCACGCTGCT‑GAGTTACGCCAGGTTCgga > 2:54259/1‑237 (MQ=255)
tGCGTTATGCGGTGGATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GGGTTACGCCCGtttggg > 1:719880/1‑235 (MQ=255)
gTTATGCGGTGGATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACt > 1:467708/1‑239 (MQ=255)
tATGCGGTGGATTATGCGGCAATGAACGACCACAGGTTGTGGCCCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGACACCGGGCTTTTCGGGCCACTGGCGTTGCCGGCAAGCGACCCGCTGACTGCT‑GCGTTACGCCAGTTTCGTCCCtct > 1:274191/1‑237 (MQ=255)
tGGATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACAACTGGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGCCATTTCTGTCCCCTGGCATGTGCGGCAAGCGACTCGCTCCCTGCT‑GCTGTACGCCAGTTTCCTAACTGTTTTCAg > 2:863843/1‑238 (MQ=255)
gATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGAGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATGCGCTGCCTGCT‑GGGTTACGCCAGTTTCGTCACTGTTTTCAGGcc > 2:731883/1‑239 (MQ=255)
tGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCGGCCTGCT‑GGGGTACGCCCGTTTCGTCCCTGGTTTCAGGCCccgc > 1:285960/1‑238 (MQ=255)
caagtgaccgcccagggTTGGGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTGCGCCGCCTGCGCATCCTCAACCACTGGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGTCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAAt < 1:307734/223‑1 (MQ=255)
cAATGACCCACCACAGGTTTGGGCTCAAGGGATTCCCCTCGGGCG‑TTTCGCGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAAt < 1:366350/238‑1 (MQ=255)
cAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCCTGGATGCAACGCGCGGAGGCAACCGGGCTTTTCGGGCCACTGGCGTTGGCGCCAGGCGATCCGCGGCCGCCT‑GAGTTGCGCCCGTTTCTTCCGTGTTTCAAGGCAGCGCTCAATg > 2:307734/1‑239 (MQ=255)
agagcacgtacaGTTTGTGTCGAAAGGGGTTCGCC‑CGGGCGTTTTCACGGTTAATCCGCCGCGGGGTTATTGTGTGGTGAGTTTTCCGCCGCCTGGGCATCCGCAACCCCTGGCAGGTGCATGGATGCAACGCGCGGATGAAACCGGGGTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCg < 2:763199/230‑1 (MQ=255)
acaGGTTGTGGCTCAAGGGATTCGCCTGGGGGG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCg < 1:806665/239‑1 (MQ=255)
tgtgGCCCGAGGGTTTCGCCTAGGGCG‑TTTCCCGGTTAAACAGCCAAGGCGTTATGTGTTGCTGCGTATTACCCCGCCGGCGCATCCTCAACCACGTGCAGCTGCAGGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCGGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTgg < 2:341949/238‑1 (MQ=255)
tgGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCGGCT‑GAGTGACGCCAGTTTCGTCACTGTTTTCAGGCCCAGCCCACTGGGGTTAAGACCGACggggg > 2:685415/1‑236 (MQ=255)
tgGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAACCTATCCGCTGCCTGCT‑GCGTTACGCCAGTTTCGTCACTGGTTTCAGGCCGCGGTCAATGGGTGTAAGAACGACTggcgg > 2:222960/1‑239 (MQ=255)
gCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTGTTCAGGCCGCGCTCAATGGCGTTCAGACCGa > 1:763199/1‑230 (MQ=255)
aaGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGCGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTggcggaccgg > 1:339212/1‑233 (MQ=255)
aaGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGAATGGATACAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTCGCGGCAAGCGATCCGCTGCCTGCT‑GGGTTACGCCAGTTTCGTCACTGTTTTCTGGCCCCCCTCCACGGCTGTAAGACCgcacgccggcagagg > 2:172347/1‑225 (MQ=255)
cGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCCCTGGCT‑GGGTaa > 1:612495/1‑239 (MQ=255)
gggCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCATCTGCATGGCTGCAACGCGCGGCGGAAACCGGGCTTTTCGGACCACTGGCGTTGGCGGCAAGCAATCCACTGCCTGCT‑GAGTTACGCCGTTTTCGTCCCTCTTTTCCGGCCGGCCTCAAAGGCGTTAAGCCCTACTGGCGCCCATTGCT‑GGGAGAAggga > 2:653322/1‑236 (MQ=255)
gggCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACGTTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCG‑GGGTAAAGGcc > 1:556848/1‑238 (MQ=255)
tttCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGAt > 1:816171/1‑239 (MQ=255)
ttCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCCCAATGGCGTTAAAACCGACTGGCGGCACTGGCG‑GGGTAAAGGCCCCGGGtt > 2:653754/1‑239 (MQ=255)
ggTTAAACAGCCAAAGCGTTATTGTTTGGTGCGTATTACGCCGCCTGCGCAATCTCAACCACTTGCAGCTGGATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGc < 1:569619/239‑1 (MQ=255)
gTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCCCTGGCT‑GGGGAAAGGCCCCGGGTTAAcccc > 1:916114/1‑239 (MQ=255)
ttAAACCGCCCAAGTTTTTTTGTTTGTCGGGTATTAGGGCGCCGGGGCACCCTAAACCTCTTGAAGGTGCATGGATGGAACGCGGGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGcc < 2:406373/238‑1 (MQ=255)
atAAACGGCCTCGGGGTTGTTGTTTGCTGGGTATGACGCCGCCTGAGCATGCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAGCAGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGc < 1:489595/236‑1 (MQ=255)
aGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCCCTGGCG‑GGGGAAAGGCCCCGCATTaagccccaggctggagaac > 2:210500/1‑222 (MQ=255)
ttttttttttGCTTCGTTTTCCGCCGCCGGGGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACg < 2:816171/232‑1 (MQ=255)
tgctgcGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCGTGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCCGTTTCGTCACTGTTTTCAGGCCGCGCGCAATGGCGTTACGACCGACTGGCGGCACTGCAT‑GGGGTAAGGACCCCGATTAACGTCGAGACattataagaaccagagggga > 2:589229/1‑224 (MQ=255)
tgctgcGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACCTGCT‑GGGTAAAGGCCCCGGGTTAACACCGGGTCGTGAT‑GAACAGCCGAGCGGa > 1:765411/1‑239 (MQ=255)
gctgcGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAgg < 1:606928/149‑1 (MQ=255)
gctgcGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAgg > 2:606928/1‑149 (MQ=255)
cGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCcgcg > 1:91424/1‑150 (MQ=255)
cGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCcgcg < 2:91424/150‑1 (MQ=255)
aTTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCCCTGGCT‑GGGGAAAGGCCCCCGATTAAAGCCCAGACATGGT‑GCAACCCTGGGGGGaaacacgcc > 2:488704/1‑232 (MQ=255)
tcgcgcgccTGCGCATCATCAACCGTGTGAAGCTGCAGGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACGGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTgg < 1:834506/234‑1 (MQ=255)
cgccTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGcc < 1:653754/239‑1 (MQ=255)
ccccTGCGCCTCCGCCACCCTTTGCAGCTGCGTGGATGCAACGCGGGGAGGAAACCGGGCTTTTCGGGCCCCTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGcc < 2:285960/237‑1 (MQ=255)
ccTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCCCTGGCT‑GGGGAAAGGCCCCGGCTTAAACCCGGGCCATGAT‑GAAACCCTGAGCGGAAAGCTGCGGGGGGcccg > 2:380126/1‑237 (MQ=255)
ccTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGTCT‑GGGGAAAGGCCCCGGATTAAAGCCGAGGCCTGGT‑GACAAGCTGGGCGGAATGCGgcgggcgggcgg > 2:371294/1‑235 (MQ=255)
gcgcATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAAGCCCCGGATTAAAGCCGAGTCATGAT‑GACACCCCGAACGGAATGCTGCTGGGGGCCTggga > 1:897431/1‑237 (MQ=255)
ccTCAACCTATTGCAGCTGCAGGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATgg < 1:697277/239‑1 (MQ=255)
ccTCAACCACTTGGAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATgg < 1:488704/239‑1 (MQ=255)
aCCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGCTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGGA‑TTATGGCGCtt > 1:410714/1‑239 (MQ=255)
tGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCACCTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATg < 1:784431/239‑1 (MQ=255)
cTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GCCACGCTGAGCGGAATGCTGCTGGCGGCCTGGGA‑TTATTGCGCTTTAGATgcgcg > 1:835721/1‑238 (MQ=255)
aTGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTTACGCCGAGTCATGCT‑GACACCCTCACGGGAATGTGGCCGGCGGCCCGGGT‑TTATGGCGCTTTAGTGGCGCGCCCCg > 2:54996/1‑239 (MQ=255)
aCGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACACCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGCA‑TTATTGGGCTTTAGATGCGCGCTCCGGTGTTCCGt > 1:602025/1‑239 (MQ=255)
cgcgGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTa > 1:486901/1‑137 (MQ=255)
cgcgGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTa < 2:486901/137‑1 (MQ=255)
cgGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGCTTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGACTGGTA‑TTATGGCGCTTTAGATGGGCGCCCCGGTCGGCCGgttttt > 2:410472/1‑239 (MQ=255)
gaggaAACCGGGCTTTTCGGCCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTTCGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTg < 1:805877/238‑1 (MQ=255)
aggaAACCGGGTTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGc < 1:380126/238‑1 (MQ=255)
ggggTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GGGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGa < 1:685415/239‑1 (MQ=255)
gggTTTTTCGGGCCCCTGGGGTTGGCGGCAAGCGTTCCGCTGCGTGCT‑GAGTTACGCCAGTTTGGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGCCCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGa < 2:916114/239‑1 (MQ=255)
gCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCGCCGGTCGGCCGTTTTTTGCCTGTTCCGACa > 1:263733/1‑239 (MQ=255)
gCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGGCATGAT‑GACACGCTGAGCGGGATGCTGCTGGCGGCCTGGTA‑TTATGGGGCTTTAGATGCCGGGCCCGGTCGCCCGTTTTTTGCCTGGTCCGACa > 2:19802/1‑239 (MQ=255)
gttttGGGGCCCCTGGGGGTGGGGGCAAGGGATCCGGTGCCTGTT‑GAGTTACGGCAGTTTCGTCACTGGTTTCAGGCCGCGCTTAATGGCGTTAAGACCGAATGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACa < 2:467708/237‑1 (MQ=255)
cTTTTCGGGCCACTGGCGTTGGCGGCAAGCGAGCCGCTGCCTGCT‑GAGGTACGCCAGTTTCGTCACTGTGTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGAGTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGTCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACa < 1:692186/238‑1 (MQ=255)
cGGGCCGCTGGCGTTGGGGGGAAGCCATCCGCTGCCTGCT‑GAGTTTCGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGGCCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGc < 1:547152/239‑1 (MQ=255)
cGGGCCCCTGGCTTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGc < 1:715734/239‑1 (MQ=255)
ggcccatGGCTTTGGGCGCAAGCGATCCGCTGCCTGCT‑TGTTTCCGCCAGTTTCGTCACGGTTTTCCGGCCGCGCTCAATGGGTTTAAGCACGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCaa < 2:556848/233‑1 (MQ=255)
gcagcTGGCGTTGGCGGCAAGGGATCCGCTGCCTGCT‑GGGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCaa < 1:584693/234‑1 (MQ=255)
gCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGGTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCaa < 1:876113/238‑1 (MQ=255)
gCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAATTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCaa < 1:730093/238‑1 (MQ=255)
ccACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GGGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCTGGGGTAAAGGCCCCGGATTAACGCCGCGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCaa < 1:87820/238‑1 (MQ=255)
tGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGGCTGGGA‑TTATTGCGCTTTTAAGGCGCGCTCCGGGGGTCCGTTTTTTGCCTGtttcctcaaattgacacccgt > 2:757587/1‑219 (MQ=255)
aaGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCCATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTg < 1:210500/238‑1 (MQ=255)
aaGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTg < 1:19802/238‑1 (MQ=255)
ttCCGCTGGCTGCT‑GAGTTGCGCCAGTTTCGTCAGTGTTTTCAGGCCGCGGTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGt < 1:797230/237‑1 (MQ=255)
ttCCGCTGCCGTCT‑GGGTTTCGCCCGTTTGGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTc < 2:765411/238‑1 (MQ=255)
aTCCGCTGCTTGCT‑GGGTTGGGCCAGTTTCGGCACTGTTTTCGGGGCGCGCTCAATGGCGTTAAGACCGACTGGCGGGACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GCCACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTc < 2:624210/239‑1 (MQ=255)
aTCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCCCTGGCT‑GGGTAAAGGCCCCGGATTAAACCCGAGCCATGCTGGACA‑GCGGAGCGGGATCGTGCTGGCGGCCTGGGATTTAGGGCGTTTTA‑ACAGGCGCCCCGGGCACCCGGCTTGTTCCTGTTCCCCCAAACTACAACCCGTTAcacaacccggcacacg > 2:404067/1‑223 (MQ=255)
tCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTc < 1:757587/238‑1 (MQ=255)
ccGCTGCGTGCTGGGGTTAC‑CGAGTTGCGTCCCTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTCAg < 2:719880/239‑1 (MQ=255)
tggctgct‑gAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGGTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTCAGTTAt < 1:371294/236‑1 (MQ=255)
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TGCGCAATTCGATGCGTTATGCGGTGGATTATGCGGCAATGAACGACCACAGGTTGTGGCTCAAGGGATTCGCCTCGGGCG‑TTTCACGGTTAAACAGCCACAGCGTTATTGTTTGCTGCGTATTACGCCGCCTGCGCATCCTCAACCACTTGCAGCTGCATGGATGCAACGCGCGGAGGAAACCGGGCTTTTCGGGCCACTGGCGTTGGCGGCAAGCGATCCGCTGCCTGCT‑GAGTTACGCCAGTTTCGTCACTGTTTTCAGGCCGCGCTCAATGGCGTTAAGACCGACTGGCGGCACTGGCT‑GGGTAAAGGCCCCGGATTAACGCCGAGTCATGAT‑GACACGCTGAGCGGAATGCTGCTGGCGGCCTGGTA‑TTATGGCGCTTTAGATGCGCGCTCCGGTCGTCCGTTTTTTGCCTGTTCCGACAATCTGCAACTCGTTACCACAGCGGTGAGCGTCAGTTAT > NC_000913/549800‑550262
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
