Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,854,796 |
A→C |
19.0% |
V20G (GTG→GGG) |
ydjF ← |
putative DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,854,796 | 0 | A | C | 19.0%
| 154.9
/ 2.4
| 77 | V20G (GTG→GGG) | ydjF | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (35/24); new base C (3/14); total (38/39) |
| Fisher's exact test for biased strand distribution p-value = 4.88e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGGTGGTTTTATTGTCGATAAAGGGTAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTAACGCTCCAGGGCCTCTGCCATTTCCCTCATCAATGT > NC_000913/1854566‑1855029
|
tggtggTTTTATTGTCAATAAAGGGTAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACTATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTa < 1:832716/239‑1 (MQ=255)
cGATAAAGGGTAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTGTAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCAAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCCACCAAATTTGAGACGTTCACCTTTTTATCGTTGGCAACCAtt > 2:117423/1‑239 (MQ=255)
cGATAAAGGGTAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAACTTTGTGACTGTACCCTTTTTATCGTTGGCACCCCtt > 1:380879/1‑239 (MQ=255)
ggTAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTgg < 1:41404/223‑1 (MQ=255)
gtggTGCCTTGGGTGAAATAAGCTGCTTCTCTTCAAAAAACGATGAAGCGCGATTAGAAAAATGGATATTCCCCGTCAACAACGCTGCATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTGCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAAt < 2:243888/235‑1 (MQ=255)
tAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTAAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTAACTGAAAAATCCCACTAAAATTTGCGCATGTAAACATTTTATCTTTGGCAACCATTTGCGTAAtt > 2:828607/1‑238 (MQ=255)
tGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAACAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTACAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCt > 1:245941/1‑239 (MQ=255)
tGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCTTTGGCAACCATTTGCTTAATTg > 1:680590/1‑236 (MQ=255)
tGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCAACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTCATTCCCt > 1:69490/1‑239 (MQ=255)
ttGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCCTTGGCAACCATTTGCTTAATTGCCTGaa > 2:505497/1‑238 (MQ=255)
tGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACCTCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAACTTCTCAAAATCGCGGCGAATGGTTTCTTCGGTTACCTTAAAAATCCCCATCCAATTTTAGAATGGCACCTTTTTTTCGTTGGCAAACATTTGcccttctcttataacc > 2:41404/1‑224 (MQ=255)
tGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTTTCGTTGGCAACCATTTGCTTAATTGccgtaat > 2:753985/1‑233 (MQ=255)
ggcttGCAATAAGCCGCTTCTCTTCATAAAACGATGAAGCCCGCTTATAAAAATGGATATTCGCCGTCAATATCGCTGTATTTAAAACCGCACCACCAGAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATc < 1:191870/235‑1 (MQ=255)
cAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCt > 1:579462/1‑239 (MQ=255)
gctgctTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCACCTTCTCAAGATCACGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGACACCTTTTTTACATTGACAACCAATTCCTTAATTGCCTGCATCCTGCCTTTTgcc > 2:191870/1‑239 (MQ=255)
tgttttctTCATAAAATGATGAACTGCGCTTAAAAAAATGGATATTCTCCCGCAACACCGCTTTATTTAAAACAGCACCACTATAGGTTCGGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACTTGAAAAATCCCCCTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCGTGAATCCTGTCTTTTgccgcc < 2:874819/234‑1 (MQ=255)
gctTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTgccgcc < 1:193847/239‑1 (MQ=255)
ctTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTTACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCa > 1:56378/1‑239 (MQ=255)
ttCTCTTCATAAAACGACGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTTAGACTGTCACCTTTTTATCTTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTATTTTTCCCCCAc > 2:315318/1‑239 (MQ=255)
ctctTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCCCGa > 1:345548/1‑239 (MQ=255)
ttCATAAAACGTTGAAGCGCCTTTATAAAAATGGATTTTCTCCGTCAACATCGCTGTATTTAAAACAGCCCCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTa < 2:319756/239‑1 (MQ=255)
ttCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCCCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATTGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTa < 1:828607/239‑1 (MQ=255)
aCGTTGAAGCGCGCTTAAAAAAATGGATTTTTCCGGTCAACATCGTTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAAGGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTg < 2:570072/239‑1 (MQ=255)
tttaaGCGCGCTTATAAAAAGGGATATTCCCCGTCAACCTCGCTTTATTTAAAACAGCCCCCCCATAGGTTCTGTTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTAt < 2:855218/236‑1 (MQ=255)
tGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCGGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTAt < 1:505497/238‑1 (MQ=255)
gcTTATAAAAATGGATTTTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACa < 1:753985/239‑1 (MQ=255)
gcTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACa > 1:77053/1‑239 (MQ=255)
ccTTAAAAAAATGGATTTTCCCCGTAAAACCCCCTTTATTTAAAACAGCCCCCCCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACa < 2:680590/238‑1 (MQ=255)
atatTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGa > 1:546875/1‑239 (MQ=255)
attttcccgtaaactaccgtttATTTAAAACAGCCCCACCATAGGTTCTGGTCAAAAA‑GCCTTCACCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGAt < 2:579462/218‑1 (MQ=255)
tccttaaacatgcttttATTTAAAACAGCCCCCCCATAGGTTTTGGTCAAAAA‑GCCTTCATCTTCCAGCCTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCg < 2:77053/223‑1 (MQ=255)
ccctCAACATCTCTGTATTTAAAACACCACCCCCAATGTTTCTGGTCAAAAA‑GCCTTCATCCTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAACCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGc < 2:99536/236‑1 (MQ=255)
tttttaagaaacaattttAAAACCTCCCCCCCATTGTTTTTGGTAAAAAA‑GCCTTCCTCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAATTCCCCCTCAAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCAt < 2:253252/224‑1 (MQ=255)
tGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGttt > 2:685995/1‑239 (MQ=255)
cgCACCACCATAGGTTTGGGTCAAAAA‑GCCTTCATCTTCCAGCTTCCCAAGATCGGGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATa < 1:117423/238‑1 (MQ=255)
aGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCCCATTAGCGCGATTATCGCATAACCGAGGTTTACTTTCAAAATa > 1:873733/1‑239 (MQ=255)
aGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTAAATCACATTAACCCGATTAACCCAAAACCGAGGTTTACTTTCaaaaaa > 2:423916/1‑237 (MQ=255)
cccccccaTAGGTTC‑GGTGAAAAAGGCTTTCATCTTCCAGATTTCAAAGATCGCGGGTAATGGTTTTTTGGGTTACCGAAAAAATCCCACTTAAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGATTAATTTCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAAc < 2:380879/234‑1 (MQ=255)
caccacCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATTACATTAgc > 1:327150/1‑201 (MQ=255)
caccacCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGtt > 1:253252/1‑224 (MQ=255)
ggTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCTCTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTaca < 2:405109/163‑1 (MQ=255)
ggTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTaca > 1:405109/1‑163 (MQ=255)
ttCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCCCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAAt < 1:88047/237‑1 (MQ=255)
tCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCa < 1:203132/95‑1 (MQ=255)
tCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCa > 2:203132/1‑95 (MQ=255)
tCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCCCGATTATCGCATAACCGGTGTTTACTTTCAAAATAACCTGTTTGAAtaaa > 2:475852/1‑236 (MQ=255)
tCTGGGCAAAAA‑GCCTTATTTCTCCAGCTTCTCAAGATCGCTGGAAATGGTTTCCTCGGTTCCCTGAAAAATCCCCCTCAAATTTGAGACTGTCACCTTTTTAGCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATcac < 2:69490/239‑1 (MQ=255)
tGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCCCATTATCGCGATTATCCCATAACCGATGTTTACTTTCAAAAAAACCTGTTTGAATccaag > 2:411814/1‑235 (MQ=255)
tGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCCCATTAGCGCGATTATCGCATAACCGCTGTTTACTTTCAAAAAAACCTGTTTGAATCAAAg > 2:719095/1‑239 (MQ=255)
tGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCAt > 2:860116/1‑199 (MQ=255)
tGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAg > 2:676885/1‑239 (MQ=255)
tGGTCAAAAA‑GCCTTCATCTTCCAGCTTCCCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCAt < 1:860116/199‑1 (MQ=255)
tGGTCAAAAA‑GCCTTCATCTTCCAGCT‑‑TCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTCCCGCCACGATTACACCCCCGTATCTTTTTACATCCCATTATCGCGATTATCGCATAAACGCTGTTTACTTTCAAAAGAACCTGTTTGAATCACAAAt > 2:173905/1‑239 (MQ=255)
ggTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGCAACATCCCACTCACATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTATTTGCCTGAATCCTGTCTTTTGCCTCCACGATTACACCCCTGTTTCTTTTTCCCTCCCATTAACGCGCTTTTCGCATAACCCCTTTTTACTTTCAAAAAAAACTTTTTTAATccacga > 2:122935/1‑234 (MQ=255)
gTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTAAATCACATTAGCGCGATTATCGCTTAACCGATGTTTACTTTCAAAAAAACACGTTTGatacaaacat > 2:579602/1‑230 (MQ=255)
cTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATcaca > 1:669927/1‑239 (MQ=255)
cTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATcaca > 1:616317/1‑239 (MQ=255)
ttCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCTACGATTACACCCCTGTATCTTTTTACATCCCATTAGCCCGATTCACGCATAACCGATGTTTACTTTCAAAATAACCCGTTTGAATcacaacattttaacacag > 2:854235/1‑225 (MQ=255)
ccaagtttCTCAAGATCGCGGCGAATGGTTTCTTCTGTTACCTGAAAATTCCCACTCAAATGTGAGACTGTCGCCTTTTGATGGTTGGCAACCATTTGGTTAATGGCCTGAATCCTGTTTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATAACATTAGCGCGATTATCGCAGAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTcac < 1:251126/233‑1 (MQ=255)
ttCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGGCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGaaa < 2:108557/238‑1 (MQ=255)
ctcAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAAt > 1:308130/1‑206 (MQ=255)
cgcgtgtattgttttttttgtttACTTGAAAAACCCCCCCAAAAATGGAACTTGTCCCCTTTTGTTGGTGGAAAACTATTTGTTTATTTGCCTGAACCCTGTTTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGGTTGAATCACAGATTTTCATTACAGTTTTCACAGAAACAGAGGTGAAt < 2:669927/218‑1 (MQ=255)
ggcgAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCCCAAAAACAGAGGTaaacagt > 2:194690/1‑235 (MQ=255)
ggcgAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAAAAGAGGAGAATCgg > 2:716840/1‑238 (MQ=255)
gattgtttttttttgTTTCCTCAAAAACCCCCCTCAAATTTGAGACTTCCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTGGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGtt < 2:546875/225‑1 (MQ=255)
gatttttttttTGGTTCCCTGAAAAATCCCCCTCAATTTGGGGACTTGCCCCTTTTTAACGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTGGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGtt < 2:873733/233‑1 (MQ=255)
aaTGGTTTCTTCGGTTTCCTGAAAAATCCCCCCCAAATTTGGAACTTTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGtt < 1:423916/238‑1 (MQ=255)
aaTGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGtt < 1:676885/238‑1 (MQ=255)
aaTGGTTTCTTCGGTTAACGTAAAAATCCCACTCAAATTTGAGTCTTTCACCTTTTTTCCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGGCTTTTGCCGCCACGATTACGCCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGtt < 1:845189/238‑1 (MQ=255)
aTGGTTTCTTCGGTTACCTGAAAAATCCCACGCAAATTTGAGCCTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGa < 1:411814/239‑1 (MQ=255)
tttgttttccTGAAAAATCCCACCCAAATTTGGGACTGTCCCCTTTTTGCCGGTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAACAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTaa < 2:345548/231‑1 (MQ=255)
ttcGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTaa < 1:122935/239‑1 (MQ=255)
ttcGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTaa < 1:719095/239‑1 (MQ=255)
cGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTTCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTATTTTCTAAATAACCTGTTTGAATCACCGATTTTCATCACATTTTTCACGTAAACAGAGGTGACACGAGTTGTGTTTTTAAc > 2:705794/1‑238 (MQ=255)
aaaTCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTAACGCTCCAGGGCctc < 1:315318/239‑1 (MQ=255)
cAAATTTGGGTCTTTCCCCTTTTTTGCGTTTGCAACCATTTGCTTAATTCCCTTAAACCTGTCTTTTGCAGCCACGATTACACCCCTTTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTAACGCTCCAGGGCCTCTGCCATTTcc < 2:741724/239‑1 (MQ=255)
ttGGGACTGTCCCCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTAACGCTCCAGGGCCTCTGCCATTTCCCtcat < 1:579602/239‑1 (MQ=255)
tgggctttgcACCTTTTTACCGTTGGCACCCTTTGTCCTAATTGCCTGAATCCTTGTTTTTGCCGCCACGATTACCCCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTAACGCTCCAGGGCCTCTGCCATTTCCCtcatc < 1:303848/230‑1 (MQ=255)
atGTCAACTTTTTATCGCTGCCAACCATTTGATTAATTGACTGGATCCTGTCTTTTGCTGCCACGATTACACCCCTGTATCTTTTTACATCACCTTTGCGCGATTATCCCATTATCGATGGTTACTTTCATAATAACCTGTTTGAATCACAGCTTTTACTCACAGTTTTCACCGAAAAAGAGGTGGATCGCCTTGCGACTTTAAAGATGCAGGGCCTCTACCATATCCCTCAACAAttt > 2:34708/2‑237 (MQ=255)
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TGGTGGTTTTATTGTCGATAAAGGGTAGTGCCTTGCGTGCAATAAGCTGCTTCTCTTCATAAAACGATGAAGCGCGCTTATAAAAATGGATATTCTCCGTCAACATCGCTGTATTTAAAACAGCACCACCATAGGTTCTGGTCAAAAA‑GCCTTCATCTTCCAGCTTCTCAAGATCGCGGCGAATGGTTTCTTCGGTTACCTGAAAAATCCCACTCAAATTTGAGACTGTCACCTTTTTATCGTTGGCAACCATTTGCTTAATTGCCTGAATCCTGTCTTTTGCCGCCACGATTACACCCCTGTATCTTTTTACATCACATTAGCGCGATTATCGCATAACCGATGTTTACTTTCAAAATAACCTGTTTGAATCACAGATTTTCATCACAGTTTTCACAGAAACAGAGGTGAATCGTGTTGAGTATTTAACGCTCCAGGGCCTCTGCCATTTCCCTCATCAATGT > NC_000913/1854566‑1855029
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
