Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F9 I0 R1 113 83.2 1840812 91.6% 1686183 224.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,976,691 T→C 13.3% E150G (GAG→GGG)  motA ← proton conductor component of flagella motor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,976,6910TC13.3% 217.2 / 2.3 92E150G (GAG→GGG) motAproton conductor component of flagella motor
Reads supporting (aligned to +/- strand):  ref base T (38/39);  new base C (4/10);  total (42/50)
Fisher's exact test for biased strand distribution p-value = 2.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

GTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCTTTGG  >  NC_000913/1976458‑1976928
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                              
taaaaaGAGTCGTAAATGGGGAAAAAAATCCGTAATACAAAAAATGGCCGAGGAAGGTCCCCACCATCGCATGGGCGATAAGCGCCCCCAGTCCGTCGGCAGGACGATCGGCTGAACCTACCGCGTGAACGACCCCAATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTca                                                                                                                                                                                                                                          <  2:310891/237‑1 (MQ=255)
        gTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGCCTGTTCGCCGGGGCTTCGGCCTCGCTTTCTTGAGCCTCACTCTC‑TTcatccatccg                                                                                                                                                                                                                                  >  1:227569/1‑237 (MQ=255)
        gTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCac                                                                                                                                                                                                                                  >  1:805223/1‑238 (MQ=255)
         tCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGACGTGAGTCCCCGACCAGCGCCAGACAGTTCGCCGGGACTTCGGCCTCGCTTCCGCGCGTCCCACTCTC‑TTCATccaccaaa                                                                                                                                                                                                                                 >  2:527905/1‑237 (MQ=255)
                   ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACCTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGttt                                                                                                                                                                                                                        >  1:739385/1‑238 (MQ=255)
                   ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACCGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCCTCCATCAGAGCTTCGAtt                                                                                                                                                                                                                        >  1:864375/1‑238 (MQ=255)
                     aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGCTTTCg                                                                                                                                                                                                                     >  1:232350/1‑239 (MQ=255)
                      aattaacCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCGCCATCGCATGTGCGATAAGCGCGCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGa                                                                                                                                                                                                                    <  1:17122/239‑1 (MQ=255)
                       ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGCCTGTTCGCCGGGACTTCGGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGaa                                                                                                                                                                                                                   >  1:3633/1‑239 (MQ=255)
                        taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAg                                                                                                                                                                                                                  <  1:299534/239‑1 (MQ=255)
                        gaccgccGTAAGCCAAAAAAATGCCGAGGAAAGTCCCCACCATCGCATGGGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGa                                                                                                                                                                                                                    <  1:295215/232‑1 (MQ=255)
                                tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCCAGGCTTCGATTTCGAAGGGGTTCAt                                                                                                                                                                                                          >  1:743055/1‑239 (MQ=255)
                                tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCCACCAACGCCAGACTGTTCCCCGGGACTTCTCCCTCGCTTTCGTGCGTCTCAATCCC‑TTCATCCATCAAAGCTCCCATTTGGAAGGGGtt                                                                                                                                                                                                             >  2:706557/1‑236 (MQ=255)
                                     cAATAAAATGCCGAAGAAAGGCCCCACCATCCGAGGTGCGAAAAGCGCACCCAGCTCGGCGGCAGGACGAGCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                                     <  1:156216/239‑1 (MQ=255)
                                     cAATAAAAGGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                                     <  1:580263/239‑1 (MQ=255)
                                        tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCCTGCGTCCCAACCCT‑TTCATCCACCAGAGCTTCGATTTCGAAGGTGGTCAttctgtc                                                                                                                                                                                                    >  2:295215/1‑231 (MQ=255)
                                               ccGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGTGGTTCATGTGACCGCTGATaa                                                                                                                                                                                            >  1:236084/1‑238 (MQ=255)
                                                      atgcccccccccTCGATTGGGCGATAAGGGGCCCCGGCTCGGCGGCAGGACGGCCGGCTGAAGCTAACGCCAGAACGACCCCCATTACAGCCGCAACAATACCAAGCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTGCATGTGACCGCTGATAATCAGgcg                                                                                                                                                                                     <  2:757236/234‑1 (MQ=255)
                                                      actgcacccccttCGCAGGTTCGATAAGCGCCCCCAGCCCGGCGGCAGGCCGTTCGGCTGAAACTAACGGGTGAACGCCCCCAATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCTTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGgcgc                                                                                                                                                                                    <  2:418025/227‑1 (MQ=255)
                                                         tCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACAATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCCTGTTACCCCTGGTAATCAGCCGCAGa                                                                                                                                                                                 >  1:332400/1‑239 (MQ=255)
                                                              accaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAACAGCCGGCAGTGAGTCCCCGACCAGCGCCCGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCCTACAAGCTTCGATTTCGCAGGTGTTCATTCGCCCGCTGATAATCAGGGGCGGATAAtg                                                                                                                                                                            >  2:694402/1‑238 (MQ=255)
                                                               ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCCC‑TTCATCCACAAGAGCTTCGATTTCGAAGGTGTTCATGTGACCCCTGATAATCAGGCCCAGCAAATcc                                                                                                                                                                           >  2:846074/1‑238 (MQ=255)
                                                                   cGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAAGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGACCGCTGATAATCAGGCGCAGATAATcaccga                                                                                                                                                                       >  1:101419/1‑234 (MQ=255)
                                                                          gcgctaacccccccccGCCCGGGGGGAGGACGTCCGGATTAACCCAAGGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATc                                                                                                                                                                <  2:223593/227‑1 (MQ=255)
                                                                          ccgttcgcgccccccAGCCCGGGGGCAGGCCCATCGGCCGAACCTAACCCGTGACCGCCCCCCATTCCAGCCGCAACAAAACCAAACTCCGGAAGGGAGTCCCCGACCAGGGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTGCGAAGGTATTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATc                                                                                                                                                                <  2:3633/227‑1 (MQ=255)
                                                                           cGATAAGCGCACCCAGCCCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATc                                                                                                                                                                <  1:846074/238‑1 (MQ=255)
                                                                             aTAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                                     >  1:913690/1‑199 (MQ=255)
                                                                             aTAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGAc                                                                                                                                                                                                     <  2:913690/199‑1 (MQ=255)
                                                                                aGCGCACCCAGCGCGGCGGCAGGACGATCGGCTGAACCAAACGCGTGAACGACCCCCATTACAGCCGCAACAATTCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCAt                                                                                                                                                          <  1:706557/239‑1 (MQ=255)
                                                                                  cgcACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGCTTTCGAAGTGGTTCTTGTGCCCGCTGATAATCAGGCGCATCAAATACACGATAAAATCaacccta                                                                                                                                                         >  2:668651/1‑233 (MQ=255)
                                                                                     aCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATTCC‑TTCATCCATCAGGGCTTCGATTTCGAAGGGGTTCATGTGCCCGCTGGTAATCAGGGCCCGATAATCGCCGATaaaaaaaaaacagaagc                                                                                                                                                     >  2:469844/1‑226 (MQ=255)
                                                                                          gCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGCTTTCGAAGGTGTTCTTGTGACCGCTGATAATCCGGCGCAGTAAATCGACGCTAAAATCAAGCATGaaccaatc                                                                                                                                                 >  1:404531/1‑231 (MQ=255)
                                                                                          gCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATcc                                                                                                                                                >  1:100540/1‑239 (MQ=255)
                                                                                          gCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGACCGATGTTAATAAGGCGCAGATAATTGACGATAAAATAAAAAATAACGCAATcc                                                                                                                                                >  2:102654/1‑239 (MQ=255)
                                                                                              gggggccggcaggcgggCTTACCCTAACGGGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGa                                                                                                                                            <  2:866625/224‑1 (MQ=255)
                                                                                                   ccggccGATCGGCTGAACCTAACTCGTGACCGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGAt                                                                                                                                        <  1:801610/233‑1 (MQ=255)
                                                                                                     gggccgccGGTTGAACCGTACGGGTGAACCGCCCCCTTTCCCGCCGCAACAATTCCAAAGCGCGGAACTGAGCCCCCGACCAGCCCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCg                                                                                                                                     <  2:146740/232‑1 (MQ=255)
                                                                                                            cGGCTGAACCTAACGGGTGAACGACCCCCATTACAGCCGCAACAATTCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAg                                                                                                                              <  1:287916/239‑1 (MQ=255)
                                                                                                                  aaCCCAACCGGTGAACGCCCCCCATTACAGGCGAAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCGGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCg                                                                                                                        <  2:893525/239‑1 (MQ=255)
                                                                                                                         cgcgTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGAtc                                                                                                                  >  1:286072/1‑238 (MQ=255)
                                                                                                                             tGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGTTAATCAGGCGCAGCTAATCGACGTTAAAATAAAGCATGCCGCTATCCGCGGGGAAGCGTGGGTAACGGGCGAAAATCTCGc                                                                                                              >  2:570966/1‑238 (MQ=255)
                                                                                                                                    cccccATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGGGGGTAGCTGGCGAAGATTTCGCCCCCACgg                                                                                                      >  2:698929/1‑239 (MQ=255)
                                                                                                                                       ccATTCCAGCCGAAACAATCCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACgggg                                                                                                    <  1:235782/238‑1 (MQ=255)
                                                                                                                                           aaccgCCGCAACAATGCCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCATACCGGTCGCCGGGACTTCTGCCTCGCTTTCGGGCGTCGCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGAtttt                                                                                               <  1:743202/235‑1 (MQ=255)
                                                                                                                                              aGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAg                                                                                                                                                                                                                  <  2:809096/121‑1 (MQ=255)
                                                                                                                                              aGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAg                                                                                                                                                                                                                  >  1:809096/1‑121 (MQ=255)
                                                                                                                                              aGCCGCAACAATACCAAACGCCGGAAGGGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGCGCCTACCCGCCAGGTGGGCTGGGTAACTGGCAAAGAACTCCCCCTCAGGGGGGTTTTTaa                                                                                            >  2:808734/1‑239 (MQ=255)
                                                                                                                                               gCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGACAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGAAGCTGGCGAAGATCTCGCTCTCACGGGGACTTTCAat                                                                                           >  1:630571/1‑239 (MQ=255)
                                                                                                                                                ccGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAatt                                                                                          >  1:713892/1‑238 (MQ=255)
                                                                                                                                                ccGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAata                                                                                          >  1:329586/1‑239 (MQ=255)
                                                                                                                                                 cGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGCCGATAAAATCAAGCATGACGCTATCCGCGAGGATGGGTGGGGAGCTGGCGAAAGTCCAGCCCTCACGGGGATTTTCAaaat                                                                                         >  2:235782/1‑239 (MQ=255)
                                                                                                                                                  ccaacaaTCCCAAACTCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCGCAATCCC‑TTCATCCATCAGGGCTTCGATTTCGAAGGTGTTCATTGGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATc                                                                                        <  2:329586/238‑1 (MQ=255)
                                                                                                                                                            cAAACCCCGGAAGTGTGCCCCCGACCCGCGCCAGGCTTTTCCCCGGGACTTTTGCCTCGCTTTCGGGCGTCCCAATCCC‑TTCATCCATCAGGGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGc                                                                              <  2:404531/239‑1 (MQ=255)
                                                                                                                                                              aaCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGCCGATAAAATCAAGCATGACGCTATCCCCGAGGATGCGTGGGTCGCTGGGGACGACCTCGCTCTAACGGGGATTTTCAATATACGGTTCCAGCGa                                                                            >  1:697493/1‑239 (MQ=255)
                                                                                                                                                              aaCGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGa                                                                            <  1:698929/239‑1 (MQ=255)
                                                                                                                                                                 gCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGaaaa                                                                         <  1:249207/239‑1 (MQ=255)
                                                                                                                                                                 cccggaatgtggTCCCCGACCAGCGCCAGACTGTGCGCCGGGCCTTCTGCCACGCTTTCGTGCGTCCCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGGGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGTGATTTTCAATATCACGTTCCAGCGaaaa                                                                         <  2:779256/228‑1 (MQ=255)
                                                                                                                                                                   cGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCCCTCACGGGGATTTTCAATAAACCGTTCCACGGaaaaaa                                                                       >  2:905947/1‑237 (MQ=255)
                                                                                                                                                                        gTGAATCCCCGACCAGCGCCATGCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCCCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATccc                                                                   <  1:668651/238‑1 (MQ=255)
                                                                                                                                                                                ccGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGcc                                                           >  1:887188/1‑238 (MQ=255)
                                                                                                                                                                                   aCCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGa                                                       >  1:634318/1‑239 (MQ=255)
                                                                                                                                                                                    ccAGCGCCAGACTGTTCGGCGGGACTTCTGCCTCGCTTTCGGGCGTCTCAATCCC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATcccc                                                                  <  1:249373/227‑1 (MQ=255)
                                                                                                                                                                                     cggccccagttttttCGCCGGGCTTTTTGCCTCGTTTTCGTGCTTCCTAATCTC‑TTCATCCACTAGGGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGAtt                                                     <  2:248900/226‑1 (MQ=255)
                                                                                                                                                                                        cgcCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCACCTGCCCCGATTTc                                                   >  1:451312/1‑238 (MQ=255)
                                                                                                                                                                                              aCTTTTCCCCGGGGCTTTTGCCTCGCTTTCCGGCGTCTCAATCCC‑TTCAACCATCAGAGCTTCGATTTCGAAGGTGTTCATGGGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCa                                            <  2:713892/239‑1 (MQ=255)
                                                                                                                                                                                              aCTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCAAAGATCTCGCTCTCACGGGGATTTTCAATTTCACTTTCCAGTGAAAAAATACCCCCCTTCCGCGaccttcccttta                                            >  2:249373/1‑228 (MQ=255)
                                                                                                                                                                                                  ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAACAATCCCCATCTGCCGCGATTTCGCCACAAACCg                                        >  1:810033/1‑239 (MQ=255)
                                                                                                                                                                                                  ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAAcct                                        >  1:248900/1‑238 (MQ=255)
                                                                                                                                                                                                  ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCg                                        >  1:797153/1‑239 (MQ=255)
                                                                                                                                                                                                  ttCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCACCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCg                                        >  1:200416/1‑239 (MQ=255)
                                                                                                                                                                                                           ctttCTGCCTTGTTTTGGTTCTGTTCAATCGC‑TTACTCCATCTGAGCTTGGATTCGGATGGTGGACATGTGACCGCTGAAAAGCCGGCGCAAATAATCGACTATAAAATCAAGCATGACGTGATCCGCGAGGATGCGTGGGTAGCTGGCGAAGAGCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCa                                <  2:101457/236‑1 (MQ=255)
                                                                                                                                                                                                            cTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGCTAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAACaaa                              >  2:214041/1‑237 (MQ=255)
                                                                                                                                                                                                            cTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAg                                                                                                                              <  1:3778/143‑1 (MQ=255)
                                                                                                                                                                                                            cTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTCACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAg                                                                                                                              >  2:3778/1‑143 (MQ=255)
                                                                                                                                                                                                                 gCCTCGTTTTCGGGCGTCCCAACCTC‑TTGCGCCAGCAGGGCTTCGATTACGAAGGTTTTCATGGTGCCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcag                         <  2:864375/239‑1 (MQ=255)
                                                                                                                                                                                                                 gCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGATCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcag                         <  1:694402/239‑1 (MQ=255)
                                                                                                                                                                                                                   ctctgtttCGTGCGTCACAATCTC‑TGCATCCAACAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  1:288896/234‑1 (MQ=255)
                                                                                                                                                                                                                   cctgCTTTCGGGCGTCTCAATCTC‑TTCATCCAACAGAGCTTCGATTTCGAAGGTTGTCATGGGACCGCTGATAATCAGGCGCAGATAATTGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  1:102654/236‑1 (MQ=255)
                                                                                                                                                                                                                   cccggtttccggcgttccAATCCC‑CTCAACCAAGAGAGCTTCGATTTCGAAGGTGGTCATGGGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  1:808734/222‑1 (MQ=255)
                                                                                                                                                                                                                   cccgctttttttgtttccAATCTC‑TTCAGCCATCAGAGCTTCGATTTCGAAGGTGTTCAGGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  2:100540/222‑1 (MQ=255)
                                                                                                                                                                                                                   cccGCTTTCGTGCG‑GTCCAACTCTTTCAACCATCAGTGCTTTGGTTTCGAAGGTTTTCATGTGACCGGTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGCCGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGAGAAAGCAGAGCcagca                       <  1:214041/237‑1 (MQ=255)
                                                                                                                                                                                                                   cccGCTTGCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  1:231288/237‑1 (MQ=255)
                                                                                                                                                                                                                   cccGCTGTCGGGCGGCTCAATCCC‑TTCAACCATCAGAGCTGCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  1:570966/237‑1 (MQ=255)
                                                                                                                                                                                                                   cTCGTTTTCGTGCAGCTCAACCCT‑TTTCTCCCTCAGGGCTTCGATTTGGAAGGGGTTAATGTGACCGCTGATAATCAGGGGCAGAAAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCGCGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  2:630571/239‑1 (MQ=255)
                                                                                                                                                                                                                   cTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  1:469844/239‑1 (MQ=255)
                                                                                                                                                                                                                   cTCGCTTTCGGGGGTCTCATACCC‑TTCACCCAACAGAGTTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAAGCAGGCGCAGGTAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCcagca                       <  2:236084/239‑1 (MQ=255)
                                                                                                                                                                                                                     cgttttgtggCGTCTCAATCTC‑TTCACCCATAAGACGTTTGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGGAGATAAGCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGa                     <  2:805223/230‑1 (MQ=255)
                                                                                                                                                                                                                             ttggttccAATCTC‑TTCAATCATCAGGACTTCGATTTCGAAGGTGTTCATGGTACCGGTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCAtata             <  2:286072/232‑1 (MQ=255)
                                                                                                                                                                                                                               cGTCACAATCTC‑TTCATCCATCAGAAGTTCAATTTCGAAGGGGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGGCGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACa           <  1:233724/239‑1 (MQ=255)
                                                                                                                                                                                                                                    cAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTAATGTGACCGGTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCt      <  1:905947/239‑1 (MQ=255)
                                                                                                                                                                                                                                    cAATCCC‑TTCATCCATCAGAGCTTTGATTTCGAAGGTGTTCAGTTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCt      <  2:739385/239‑1 (MQ=255)
                                                                                                                                                                                                                                    accgctc‑tTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCt      <  1:203623/235‑1 (MQ=255)
                                                                                                                                                                                                                                      aTCCC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCttt    <  1:848246/239‑1 (MQ=255)
                                                                                                                                                                                                                                        ctc‑tTCCACCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCTTTgg  <  1:527905/239‑1 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                              
GTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTC‑TTCATCCATCAGAGCTTCGATTTCGAAGGTGTTCATGTGACCGCTGATAATCAGGCGCAGATAATCGACGATAAAATCAAGCATGACGCTATCCGCGAGGATGCGTGGGTAGCTGGCGAAGATCTCGCTCTCACGGGGATTTTCAATATCACGTTCCAGCGAAAACATCCCCATCTGCCGCGATTTCGCCATCAACCGATAAAGCAGAGCCAGCAGATCCATATACATTGCTTTGG  >  NC_000913/1976458‑1976928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A