Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R1
|
66 |
109.4 |
2318666 |
93.6% |
2170271 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
540,558 |
T→G |
29.2% |
intergenic (+50/‑7) |
allB → / → ybbY |
allantoinase/putative uracil/xanthine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 540,558 | 0 | T | G | 29.2%
| 129.5
/ 16.3
| 71 | intergenic (+50/‑7) | allB/ybbY | allantoinase/putative uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base T (13/35); new base G (20/2); total (34/37) |
| Fisher's exact test for biased strand distribution p-value = 4.71e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCT > NC_000913/540333‑540794
|
gcTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTTTGTTCa > 1:407094/1‑239 (MQ=255)
gcTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCAAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTTAGGTGTGTTTATGTTCa > 1:416152/1‑239 (MQ=255)
aTGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCGGTTTAGGGGTGTTTTTGtttcatt > 2:75333/1‑234 (MQ=255)
aTGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAAtt < 1:289146/239‑1 (MQ=255)
aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCTGGGCTTCTTCAGTTATGGGGGGTTTTTGCTCCAGTTTT‑CAGt > 2:205179/1‑238 (MQ=255)
aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTTCGGTTAAGGGGTGTTTATGTTCAATTTTT‑GAGTc > 1:1124856/1‑239 (MQ=255)
aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTc > 1:72885/1‑239 (MQ=255)
aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAAAAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGAAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGAGGGAATTTCCCGAGTACTGTGGGTATTTTTTCAAttttttcggg > 2:46527/1‑233 (MQ=255)
tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATCGGCGCGCGAATCACGAAAACCATCTTACGTGGCGATGTGATTTACGACATTGAACAGTGATTCCCTGTTGCGCCGAACGGTCAATTTATCCTTAAAAATCAGCAGTACTCTGGCCCCTGCAATGCCCGTCCTTGCTGCGGGCATTATCCCGGTTAGGGGTGCTTTCTTTCCATTTTG‑CAGttgacc > 2:682860/1‑233 (MQ=255)
cGATCTGGAATATCGCCGCAAAGGCAACCCGTATGTTGGCCGTACCATTGGCGCGCTTATCACGAAAACCATCTTACGTCGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCTTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAATCAGCcgcg < 2:1124856/238‑1 (MQ=255)
cTGTAATATCGCCACAAAGTCAGCCCTTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGc < 2:645385/239‑1 (MQ=255)
ccACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGCCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTCCAATGCCCGTCCTTGCTGCGGGCATTCTTCGGGTAGGGTGGGTTTATGTTCAATTTTT‑CCGTCAGGAGCGCACGCCC‑GTGATCAgg > 2:548019/1‑239 (MQ=255)
cacaGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATACCCGTCCTTGCGGCGGGCATTCTCTGGTTTAGGTGTGTTTTTGTTCACTTTTT‑CAGTTCGACGCGGAAGACT‑GTTTTTCGGAtt > 2:342427/4‑239 (MQ=255)
aGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑a < 1:912099/239‑1 (MQ=255)
cAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑Ag < 1:208596/237‑1 (MQ=255)
gCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGAGTCTCCGGTTACAGTGATTTTATGTTACATTTTT‑CAGTCAGCCCCGCCTGACT‑GTTATccagcattctgtggg > 2:26767/1‑225 (MQ=255)
gCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTTTTTTTACTTTTG‑CAGTCAGCCGTGTAAACCT‑TTTTCCCGGATTTC‑TGTGGGtttttttttttt > 1:251888/1‑239 (MQ=255)
cGTACCAGTGGCGCGCGTATCACGAAAACCAGCTTACGGGGTGATGTGATTTACGGCATTGAACAGGGCTTCCCTGTGGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATGCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTAttttt < 2:310292/239‑1 (MQ=255)
gTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGATTCTCCGGTTAAGGGGTGTTTATGTTTAATTTTT‑TAGGCAGCCGCGAAAGCCT‑GTTATTAGGATTTC‑GGGGGGTTTTCtttttttttt > 1:387234/1‑239 (MQ=255)
aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGTCTTCTCCCGGTCAGGGGTGCTTTTGTTCTATTTTT‑GCGTCATCACGGCACGCCT‑GTTATGCAGATTTCTCGTGATTTTT‑TTTAtttttt > 2:38303/1‑237 (MQ=255)
cATTGGCGCGCGTATCACGAAAACCATCTTACGTGTGGATGTGATTGACGACAATTAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCaa < 2:48268/239‑1 (MQ=255)
cATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCaa < 1:891536/239‑1 (MQ=255)
ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAaca < 2:791298/239‑1 (MQ=255)
ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAaca < 1:784178/239‑1 (MQ=255)
tGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAacac < 1:91988/239‑1 (MQ=255)
ggCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTTCGGTTAAGGGGTGTTTTTGTTCCATTTTT‑CAGGCAGCCGCGAAAGCCT‑GTTATCAGGATTTT‑AGTGGGTTTTCTTTTTTTTTTTTAacaag > 1:193984/1‑237 (MQ=255)
cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTTCGGTTAAGGTGTGTTTATTTTCAATTTTG‑CAGTCAGCCGCGGAAACCT‑GTTATCAGGATTTC‑AGTGGTTTTTTTTTTTTTTTTGCAACACGGTtgtg > 1:638226/1‑239 (MQ=255)
cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTAAGGTGGGTTTTTGTTCAATTTTT‑CAGTCCGACGGGGAAGACT‑TGTATCAGGGTTTC‑CATGGGTTTTTTTTTTTTTTTTTTACACGGTtgtt > 2:310554/1‑238 (MQ=255)
aCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACg < 1:315070/239‑1 (MQ=255)
aCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACg < 1:26767/239‑1 (MQ=255)
cATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑Gtt < 1:374497/179‑1 (MQ=255)
tCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTTTGTTCCATTTTG‑CCGTCCGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTTCAACCCGGTTTTGGTTCCTCCT‑ACGCt > 1:516457/1‑237 (MQ=255)
tCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTTAAGGGGTGTTTTTGTTCAATTTTT‑CAGTCAGCCGCGAAAGACC‑GTTATCAGGGTTTT‑TGTGGTTTTTTTTTTTTTTTTTGAACACGGGTGTGGGtcctcccctcgt > 2:912167/1‑231 (MQ=255)
tACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACttt < 1:342427/239‑1 (MQ=255)
aCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAaca < 1:327277/211‑1 (MQ=255)
tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTAAGGTGTGTTTATGGTTAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTTTCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑TCGCTTCTTTTTGCttt > 1:43826/1‑239 (MQ=255)
ttACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGcc < 1:46527/239‑1 (MQ=255)
tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCCGGTTTGGGGGGTTTATGTTTAAGTTTGTCAG‑CAGCCGCGAAAACCC‑GTTTTCAGGCTTTC‑ATTGGTTTTTTTTTATTTTTTGTCACACAGTTGTGGGTACTCCT‑ACGCTGCTTTCTGTTTTTCATTTGcg > 2:800285/1‑237 (MQ=255)
tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATGTTTAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTTTCAGGGTTTC‑CGTGGGTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTTAGTTGcc > 1:918886/1‑238 (MQ=255)
ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGGAAACCC‑GTTATCAGGTGTTC‑CGTGGGTTTTCTTTATTTTTTGCAACACGGTTTTGGGTCCTACT‑ACCCTACTTTTTGCTTTTCTGTTTCCGCAAAGTAGCCTGCtt > 1:590311/1‑239 (MQ=255)
ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATGTTCAATTTTT‑CCGTCAGCCCCGAAAGCCT‑GTTATCAGGGTTTC‑CGCGGGTTTTCTTTATTTTTTTTCACACCGGTGTGGTTCATCCT‑ACACTACTTTCTTCTTTTCATGTGCCGCAAAATTGCCTCCtt > 2:1158565/1‑239 (MQ=255)
ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCAATCTCCGGGTTAGGGGGGTTTATGTTTAATTTTG‑CAGTCCGCCGCGGAAGCCT‑GTTATCAGGATTTC‑CGTGGTTTTTCTTTATTTTTTTCAACACGGTTGTGGTTCCTCCC‑TCGCTACTTTTTGCTTTTTAGTTTCCGCACAGttaccctctt > 2:281537/1‑230 (MQ=255)
cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTTCCCCGTTAAGGGGTTTTTATGTTCTATTTTT‑CAGTTACGCGCGCAAACCT‑GTTAATCGGGTTTT‑TGTGGTTTTTTTTTTTTTTTTGCAAAACCGCTGTGGTTCCTCCTCCCGCCA‑TTTTTTCTTTTCAGGTTGCGCGAAGTAGCCtcgtttccc > 2:1055784/1‑230 (MQ=255)
cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑Ct < 2:72885/239‑1 (MQ=255)
ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTc < 1:310554/239‑1 (MQ=255)
tGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCCATTTTG‑CAGTCAGCCCCGAAAGCCT‑GTTATTAGGATTTC‑AGTGGGTTTTCTTTTTTTTTTTCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTTCCGCAAAGGAGCCTGCTTTAG‑CTCACCCa > 1:764962/1‑239 (MQ=255)
gcCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAata < 1:895751/239‑1 (MQ=255)
aaaGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGGTTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCt > 1:1135113/1‑239 (MQ=255)
aaaTTTATACTTAAACATCAGCAGTAAGCTGGCTCCTGCATAGCCCGTGCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTGTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTGGCAACACGGTTGTGGTTCCTCCT‑ACGCTGCTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCt < 2:638488/237‑1 (MQ=255)
aTTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAACGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGTTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGc < 2:1031917/239‑1 (MQ=255)
ttATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTa < 1:548019/239‑1 (MQ=255)
cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCa < 1:682860/239‑1 (MQ=255)
aaCATCAGCAGTAATCTGGCCCCTGCAATGCACGTCCTTGCGGCGGCCATTCTCCGGTTAAGGAGGGTTTATGTTAAATTTTT‑CACTCACACGCCAGAGGCT‑GCTATCAGGAGTTC‑TGTGGTTTTTTTTTTTTTTTTTGAACACGGTTGTGGTTCCCCCT‑TCGCTACTTTCTTCTTTTCAGTTGCCCCGAAGTAGACTCCTTAAC‑ACCACGCCATATGCTTTTTTTGTTCCCGccccg > 2:123972/1‑234 (MQ=255)
aCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGc < 1:188188/239‑1 (MQ=255)
aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCa < 2:12011/200‑1 (MQ=255)
aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCa > 1:12011/1‑200 (MQ=255)
gCCCCTGCAATGCCCGTCCTTGCGGCGGGGCTTCTCCGGGTAAGGGGTGGTTATGTTCAATTTTT‑CAGTCAGCCGCGAAAGCCC‑GTTATCAGGGTTTT‑AGGGGTTTTTTTTTATTTTTTGCAACACGGGTGTGGTTCCCCCC‑ACGCTTCTTTTTGCTTTTTTGTTTCCGCAAAATAGCCTGCTTTCG‑CACACGCCACATGCTTTTTTTTCTACCCCACTGGCCC‑CCCTCGCTCCGGCGt > 2:915343/1‑239 (MQ=255)
cccTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGc < 1:125461/220‑1 (MQ=255)
ccTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTAAGGGGTGTTTTTGTTTACTTTTG‑CAGTCAGCCGCGGAAGCCTCGTTTTC‑GGGTTTC‑AGTGGGTTTTCTTTTTTTTTTTTAACACGGGTGTGGGTCGTCCT‑ACCCTACTTTCTGCTTTTCAGTTTCCCCAAAAAGACCTGCTTAAGCCCCCCGCAA‑ATTCTTTTTTTGCTTACGCACTGGCCTCGCTTGGCCCGGGCtttt > 2:833242/1‑239 (MQ=255)
tGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGGTTATGTTCCATTTTG‑CAGTCAGCCGCGGAAGCCT‑GTTATCAGGGTTTC‑AGGGGGTTTTTTTTATTTTTTTCAACACGGCTGTGGTTACTTCT‑ACGCTACTTTCTGTTTTTCAGTTGACGCAAAGTAGCCTTCTTTCG‑GTTCCGCCATATGCTTTTCTTTCTCCCGCCCTCGCCT‑GCCTCGCTCAGGCCTTTTGc > 2:244767/1‑239 (MQ=255)
aaTGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGt < 1:75333/239‑1 (MQ=255)
tGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCa < 1:205179/239‑1 (MQ=255)
ccTTGGGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:1055784/238‑1 (MQ=255)
ccTTGCGGCGGGCATTCTCCGGTTAAGGGTTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCATGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc < 2:43826/239‑1 (MQ=255)
cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:833242/239‑1 (MQ=255)
cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:915343/239‑1 (MQ=255)
cATTCTCCGGTTAAGGTGTGTTTATGTTCAAGTTCG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑ATTAGTTTTTCTTTAGTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTACTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTCCCTCACTGGCCT‑GCGTCGCTCAGGCGTTTTGCGGTCAGCGTCGCGCTATTATGGa < 2:251888/238‑1 (MQ=255)
cGGTTAGTGGGTGTTTATGTTGAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTTGTTTTTCTTTATTTTTTGCAACCCGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCAGCGTCGCGCTATTATGGAAGGGCCAg < 2:193984/239‑1 (MQ=255)
cGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAg < 1:38303/239‑1 (MQ=255)
aGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:229574/136‑1 (MQ=255)
aGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc > 2:229574/1‑136 (MQ=255)
gtgtgtTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTgg > 2:170656/1‑235 (MQ=255)
gtgtgtTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTCCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTgg > 1:31735/1‑235 (MQ=255)
tgtgtTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCt < 1:170656/237‑1 (MQ=255)
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GCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTG‑CAGTCAGCCGCGAAAGCCT‑GTTATCAGGATTTC‑AGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCT‑ACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACG‑CTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCT‑GCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCT > NC_000913/540333‑540794
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
