Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
71 |
67.1 |
1514203 |
90.7% |
1373382 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
540,577 |
G→T |
17.1% |
A5S (GCA→TCA) |
ybbY → |
putative uracil/xanthine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 540,577 | 0 | G | T | 17.1%
| 144.2
/ 3.2
| 59 | A5S (GCA→TCA) | ybbY | putative uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base G (14/33); new base T (7/5); total (21/38) |
| Fisher's exact test for biased strand distribution p-value = 9.30e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
CTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGT > NC_000913/540356‑540799
|
cTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGTGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAg < 1:283155/229‑1 (MQ=255)
cgccaaaaGGCCGCCCGTATGTTGGCCGTCGCATGGGCGCGCGTATAACGAAAACCATCTTACGGTGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGc < 2:687398/224‑1 (MQ=255)
cccaccaATTCAGCCCGTATGTTGCCCGTACCAGTGGCGGGCGTATCACGAAAACCATCTTACGTGGTGATGGGATTTACTACATTGAACAGGGCGTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGc < 1:230308/228‑1 (MQ=255)
cccACAAATGCCGCCCGTTTTGTGGCCGTACCATTGGCGACCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGc < 2:653894/228‑1 (MQ=255)
acaAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTg < 1:234286/229‑1 (MQ=255)
cAGCCCGTATGTTGGCCATTCCATTGGCGGGCGTATCCCGAAGTCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAg < 1:213170/229‑1 (MQ=255)
aGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTTAGCGGT‑GGTTATTTTTAATTTTTCGTGCAGCcgcggagaccgggtttctgg > 1:56887/1‑213 (MQ=255)
cccGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGTTAAGGGGTGGTTTAT‑TTTACTTTTTAAGTCAGcccgcaagacacgtttctaggat > 1:47478/1‑208 (MQ=255)
ggCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCTGCGGCGCTTCTCCTGTTTAGGTGG‑GATTTTGTTCAATTTTGCAGTCCGCCCCCCAGGCCTGTTTCCAGGATTTTAGTAGG‑Ttttttttttttt > 1:435125/1‑229 (MQ=255)
cgTATTACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCACCTGCAATGCCCGTCCTTGCGGCGGGAATTCTCCGGTTAAGGGGT‑GGTTATGTTTATTTTTGCTGTCATCCGCGAAAGCCGCTTTTTAGGATTTCTGTGGT‑TTTTTTTTTTTTTTTTCaa > 2:726795/1‑229 (MQ=255)
ccGAAATCCATCGTCCGTGTGGATGTGATTTTCGTCATGGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACAGCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCCTGCGGCGGGCATTCTCCGGTTAAGGTTT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGt < 2:127040/228‑1 (MQ=255)
cGAAACCCATTTTGCGTGGTGATGTTATTTACGACATTGAACAGGGCTTCCCGGTTGCGCCGAAAGGGCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGtt < 2:223781/229‑1 (MQ=255)
ccATCTTGCGTGGTGATGTTATTTACGACATTTAACAGGGGTTCCCTGTTGCGGCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATTTGGCCCCTGCAATGCCCGTTCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGt < 1:80312/228‑1 (MQ=255)
ccATCTTGCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGt < 1:191847/228‑1 (MQ=255)
tCTTACGTGGTGATGTGATTTACGACATTGCACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCAGTCTCCGGTTAAGGGGT‑GTTTATGTTCAATTTTGCCGTCAGCCCCGCAAGCCTGTTATACAGAGTTTACTGGT‑TTTTCTTTATTTTTTTGACAATGGTTGTGGTtc > 1:579177/1‑227 (MQ=255)
tggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGGTTAGGGGT‑GGTTTTTTTTCATTTTTCCGTCGACGCCCAAAACCCGGTTTCAGGTTTTCTCTTGTGTTTTTTTTTTTTTTTGC‑ACAACGTTTTGGTTTTTCCTatcc > 2:78637/1‑226 (MQ=255)
attgtttttcgcaattggacgcggCTTCCCTGGAGCGCCCAAAGATCAACTTATCCTTAACAATCCGCCGTAATCTGGCCCCGGAAATGCCCGTCCGTGCGGGGGGCATTCTCCGGTTAAGGGGT‑GTTTATGTGCAATTTTTCAGTCAGCCGCGAAAGCGTGTTATCAGGATTTCAGTGGG‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACttt < 2:368607/207‑1 (MQ=255)
tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGTCATTCTTCGGTTAGGGGGT‑GCTTAGTTTCCATTTTGCAGTGCTCCCCGAAAGCCTGTTATCTGGATTTTTGGGGG‑TTTTTTTTTTTTTTTGCAAACCGGTTTTGGGtcctccccgcccactttttttttt > 2:691910/1‑211 (MQ=255)
cATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑Gt < 2:648017/229‑1 (MQ=255)
ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCCCGAAAGCCTGTTATCAGGGTTTCAGTGGT‑TTTTCTTTTTTTTTTTCAACACGGGTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑Gttt > 1:523993/1‑228 (MQ=255)
ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTTAAGGGGT‑GGTTTTTTTCAATTTTTCAGGCCGCCCCGCAAGGCTGTTATCAGGGTTTTATGGGT‑TTTTTTTTTTTTTTTTGACAACCGGTTTGGTTCCTCCCACCCCACttttttttttttcgttt > 2:746926/1‑215 (MQ=255)
ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAAGTGT‑GTTTTTGTTCCATTTTGCCGTCAGCCGCGAAAGCCTGTTATCAGGATTTCTGGGGT‑TTTTTTTTTTTTTTTGCAAAACGGTTGTGGGTCCTCCTACGCTCCTTTCTTTTTTTCA‑GTTTCCGCcaa > 1:596229/1‑228 (MQ=255)
tCCCTGTTGCGCCGAAAGGTCAATTTACCCTTAATCATCAGCAGTAATCTGGCCCCTGCAATGCCCGGCCTTGCGGCTGGCATTCTCCGGTTAAGTTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGc < 2:575972/229‑1 (MQ=255)
tCCCTGTTGCCCCGAAAGGTCAATTTATCCTTAAACATCAACAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTAGTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGc < 1:124084/229‑1 (MQ=255)
tCCCTGTCAGGCCGAAAGTTTACTCTACCCGTAAACATCATCAGTTACCTGGCCCCTGCAATGCCCGTCCTGGCGGGGGGCATTCACCGGTTAAGGTGT‑GGTTATGTTGAATTTTTCAGTAAGCCGCGAACGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGATTTTCA‑GTTGCCGCAAAGTCGc < 2:398761/229‑1 (MQ=255)
cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATAAGCAG‑AATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTCAGGGGT‑GTTTATGTTCAATTTTTCAGTCAGCCGCCCGAGCCCTTTTTACGGATTTCACTGGT‑TTTTTTTTTTTTTTTTCTAACCGGTTGTGGTTCCTCCTACTCTTATTTTTTCTTTTTA‑CTTTCCCCaaaaaaaccg > 2:684771/1‑222 (MQ=255)
ccGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTGAAGGTGT‑GTTTATGTTTTCTTTTTCAGTCACGCCCGTAAGCCGTTTATCTCGATTTAAGGGGT‑TTTTCTTTATTTTTTTCAACAAGGTTGTGGTGCTTCCTACGCTCCTTTTTTCTTTTCATTTTCCCGCACAG‑AGCCTGCTTTCGcc > 2:395513/1‑228 (MQ=255)
cGAAAGGTCAATTTATCCTTAAACATCCGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTc < 1:691911/229‑1 (MQ=255)
gTCAATTTATCCTTAAACCTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCaa < 1:307815/229‑1 (MQ=255)
cAATTTTTCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCACCGGTTAAGGTGT‑TTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAata < 2:406247/229‑1 (MQ=255)
aaTTTATCGTTAAACAGCAGCAGTAAGCTGGCCCCTGCACTGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAata < 1:721403/228‑1 (MQ=255)
ttATCCTAAAACATTAGCAGTAATTGTGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCt < 1:726796/229‑1 (MQ=255)
tgtgtaaaagagacgggcagTAATCTTGCCCCTGCAATGCCCGTCCTTGGGGCGGGCATTCTCCGTTGAAGGGGT‑GTTTATGTTCAAGTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGGTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCGTACGCTCACGCAATATGCt < 1:986/213‑1 (MQ=255)
aaaCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTTTAGGGGT‑GTTTTTGTTCAATTTTTCCGTCAGCCGCGCAAGCCCTCTGTCAGGCTTTCAGTGGG‑TTTTCTTTATTTTTTTCAACCCGGTCTTTGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTTCCGCAAAAAAGACTTCTTTCGCGCCCCCCATATGCTtttttttc > 2:421834/1‑227 (MQ=255)
catctagcagTAATTTGGCCCCTGCAATGCCCTTCCTTGGGGGGGGCATTCTCCGGTTAAGGTTT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTa < 2:219482/224‑1 (MQ=255)
cgctgTAATCTGGCCCCTGATATGCCCTCCCCTGCGGCTGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa < 2:102910/225‑1 (MQ=255)
ttatcggtccccgtgattGCCCTTTCTTGGGGCTGGGATTTGCCGGTTAAGGGGT‑GTTTATGTTCAATTTTTCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGc < 2:579176/212‑1 (MQ=255)
aacttGGCCCCTGTAATGCCCGTCCTTGCGGCGGGCATTCCCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGc < 1:699250/224‑1 (MQ=255)
gggCATTCTCCGGTTAAGGTGT‑GTTTATGTCAAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 2:596228/229‑1 (MQ=255)
ggttttCTGCGTTTAAGTTGT‑TTTTTTTTTCCATTTTTCAGTCAGCCGCGAAAGCCTGTTATCAGTTTTTCAGTTGT‑TTTTCTTTATTGTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc < 2:47478/225‑1 (MQ=255)
ggCATTCTCCGGTTAAGGTGT‑TTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCGTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:185999/228‑1 (MQ=255)
gaaTTCCCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGTTTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTTCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:746927/227‑1 (MQ=255)
gCATTCCCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTGTCTTTATTTTTTGAAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:729639/229‑1 (MQ=255)
acattcgtcgtgtAAGGTGT‑TTTTATGCTCAAGTTTGCATGCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCGGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:432498/217‑1 (MQ=255)
tcCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCtatt < 1:78637/228‑1 (MQ=255)
gTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGa > 1:520247/1‑229 (MQ=255)
aGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa > 1:622854/1‑175 (MQ=255)
aGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCCAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa < 2:622853/175‑1 (MQ=255)
gt‑gtTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACt < 2:471757/104‑1 (MQ=255)
gt‑gtTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACt > 1:471757/1‑104 (MQ=255)
ttttttATGTTCATTTTTTCAGTCATCCCGGGAAGTCTGTTATCAGGGTTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCCCCTACGCTAATTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAg < 2:523993/226‑1 (MQ=255)
tttATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 2:356530/208‑1 (MQ=255)
tttATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg > 1:356530/1‑208 (MQ=255)
tttATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCCCGCATTTATGGATGGGCCAGGTg > 1:309871/1‑229 (MQ=255)
ttCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtg < 1:395513/228‑1 (MQ=255)
ttCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACCCTCACGCAATATTCTTTTCTTGCTACCGCACTGGCCTGCTTCGCCCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGGGGGCtt > 2:74607/1‑227 (MQ=255)
ttttGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTCTTATGGAAGGGCCAGGTGGCCTggggg > 1:324979/1‑226 (MQ=255)
tGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcac > 2:54033/1‑191 (MQ=255)
tGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc < 1:54033/193‑1 (MQ=255)
|
CTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGT‑TTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCA‑GTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGT > NC_000913/540356‑540799
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
