Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F9 I0 R1
|
103 |
124.7 |
2465218 |
97.5% |
2403587 |
230.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
729,695 |
T→G |
22.4% |
V38G (GTG→GGG) |
rhsC → |
Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 729,695 | 0 | T | G | 22.4%
| 90.1
/ 3.3
| 56 | V38G (GTG→GGG) | rhsC | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
| Reads supporting (aligned to +/- strand): ref base T (19/22); new base G (11/3); total (31/25) |
| Fisher's exact test for biased strand distribution p-value = 6.08e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTTCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGC > NC_000913/729475‑729933
|
tttCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGAc > 2:1152561/1‑239 (MQ=255)
ttCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCCGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACg > 2:703702/1‑239 (MQ=255)
aTTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGGGGGGCGGCCgg > 2:323673/1‑238 (MQ=255)
aTCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGGCGTCCGGCCCTCCGGTc > 2:199540/1‑239 (MQ=255)
aTCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGAATTGTCCAGGGGTCAGCCGGGGTACGCATCGGTGCCCCCCCCGGCGTGGCCTGGTCGGGGTGGCCCGGGGGGGGGGCGGCCGGCCATCCgggc > 1:1065437/1‑237 (MQ=14)
aCAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCCGGCGGGGGACGCATCGGTGCCCCCCCCCGCGTGGCCCGTTCGGGGGGCCCCGGCGGGGGGGCGGCCCGCCCTcccggccctt > 1:124016/1‑230 (MQ=14)
aCAGATATCTCACTTAAGGCTTTCTTATAAATCTGCAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGTTGAGCGGAAAACCGGCGACGCGTCAGGGCGACATGCCGCAGTATCGCGG‑AGCATTGTCAAGGGTTCAGCGGGGGTACACCCCGGTGCCCCCACCGGCGTGGCCCGTTCGGTCGGCCCCCGCGGGGGGGCGCCCCGCCCTCCGGTCTAT‑cc > 1:582675/1‑238 (MQ=14)
tAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCCGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGGGGCCCGTTCGGGGTGCCCCGGCGGGGGGGCGTCCGGCCCTCCCGGCAAT‑CCGCCGCTCGGGGCaa > 2:429386/1‑239 (MQ=14)
tAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCaa < 1:1152561/239‑1 (MQ=255)
aaGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGGAGCATTGTCCAGGGTTCAGCCGGGGGACGCCTCGGGGCCCCCCCCGGCGTGGCCTTTTCGGGGTGCCCCGCCGGGGTGACGTCCGGCCATCCGGGCAAT‑CCGCTGCCCGGTGCaaa > 2:322692/1‑239 (MQ=14)
ggCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTTAGCCGGGGAACGCATCGGGGCCCCCACCGGCGTGGACTGTTCGGGGTGGCCCGGCGGGGGGGAGGCCCGCCATCCCGTCCAT‑CCCCCTCTCgggggcaagg > 2:1164467/1‑231 (MQ=14)
ttCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGCGGCCTGTTCGGTGGGGCCCCGCGGGGGGGCGTCCGGCCCTCCCGCCCAA‑TCGCTGCCCGGTGCaaacggc > 2:517226/1‑233 (MQ=14)
ttCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGGGCCCCGGCGGGGGGGCGGCCGGCCATCCCGGCAAT‑CCGCCGCCCCGTGCCAAGGGCCt > 2:275946/1‑239 (MQ=14)
tCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCtt < 2:1065437/239‑1 (MQ=255)
tGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGGAGCATTGTCCCGGGTTCAGCCGGGGGCGCCACCGGGGCCCCCCCCGGCGGGGCCCTTTCGTGGTGCCCCTGGGGGGGGACGCCCCCCCCCCCGGGCCAT‑CCCCGCGCCGGGGCACAGGGCCTTccccggggaa > 1:820634/1‑231 (MQ=2)
gTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCCCCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGGGGGACGTCCGGCCCTCCGGGCAAT‑CCTCTGCTCGGGGAACAGGGGCTTCCCGGGGaaaac > 1:1047796/1‑237 (MQ=14)
gTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGGGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGTGCGTCCGGACCTCCCGGCAAT‑CCGCTGCTCGGGGCAAAGGGCCTTTCCCGTGAAA‑c > 2:786178/1‑238 (MQ=14)
ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCCGCGGGGGGGCGTCCGGCCCTCCGGGCCAT‑CCGCCGGTCGGGGCAAAGGGCCTTCCCGGGGAAA‑CCGGCATCcccc > 2:902813/1‑238 (MQ=14)
ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGAAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCCGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCCGGGGGGGGCCGTCCCGCCAACCCGCCAAT‑CCCCTCCTCGGGGCCAAGGGCCTTCCCGGTGAAA‑CCGAcctgcccc > 1:258906/1‑231 (MQ=14)
tCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCCGGGGACGCATCCGTTGCCCCACCGGCGTGGCCTGTTCCGCTGGCCCCGGCGGGGGGGCGTCCGGCCCTACCGCCCAT‑CCGCGGCCCGGGGCACAGGCCCGTCCCGGTGGAA‑ACCACATCCCCCTgcc > 1:1071136/1‑238 (MQ=14)
tCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGCAGCATTTTCCAGGGTTCAGCCGGGGTACGCACCGGGGCCCCCACCGGCGCGGCCTGTTCGGGGGGCCCCGGCGGGGGGGCGTCCGGCCCTCCCGGCCAT‑CCCCCGCCCCGGGCCAAGGTCCTTCCCGGGGGAC‑ACGCCAccgccccgcc > 1:651648/1‑238 (MQ=14)
aaCCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGt < 1:74878/239‑1 (MQ=255)
cccGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGGCGGCCGGCCATCCGGTCAAT‑CCGCCGCTCGGTGCAAAGGGCCTTCCCGGTGGAA‑CCGACATCGCCCCGCCCCGGCCCCTGCCCtt > 2:1130031/1‑238 (MQ=14)
aTAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCCGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGGCGTCCGGCCACCCCGGCAAT‑CCCGCGCTCGGGGCCAAGGGCCTTCCCGGGCAAACCCCACTTCCCCCCccccggccccgcccgctccat > 1:414813/1‑226 (MQ=14)
tAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATtct < 2:461157/239‑1 (MQ=255)
cAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTTTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGGTCGGTGGGCCCCCGCGGGGGGGCGTCCGGCCCACCCGGCCAT‑CCGCCGCCCGGGGCCAAGGGCCCTGCCCGGGAAA‑CCCACATCCCCCCTCCCCGCCCCCTGCCCTTCCCTCTCTcc > 1:774653/1‑238 (MQ=14)
aGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGGGGGGCGTCCGGCCATCCCGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCCTTTTCTCCCCCACCTAc > 2:905534/1‑239 (MQ=14)
cAGGGCGACATGGCGCAGGATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCgcgc < 2:820634/238‑1 (MQ=255)
gACATGACGCAGTATGGCGGGAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTgg < 1:703702/238‑1 (MQ=255)
cATGACGCAGTATGGCGGTAGCATTGTCCCGGGTTCAGCCGGGGGACGCATCGGTGCCCCCCCCGGCGTGGCCCGTTCGGGGGGCCCCGGCGGGGTGGCGTCCGGGCATCCCGGCAATCCCCCGGCCGGGGGCAAAGGCCTTCCCCGGGGAAC‑CCAACA‑CCCCCCGCCCCGCCCCCTGCCCTTTCTTTTCTCCCCCCCCCCACGCAGTTTACCGGCCAAAAACGCCC‑CTCCCGTggggg > 1:1206995/1‑238 (MQ=255)
cATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGGGGCCCGTTCGGTGTGCCCCGGCGGGGGGGCGGCCGGCCCTCCCGGCAAT‑CCCCCGCTCGGGGCAAAGGGCCCTCCCCGGGGAA‑CCCACATCCCCCCGCCCGGCCCCCTGCCGCTCCTTCTCTCCCCCCCCCACAGCAG‑TTACCGGGCCAAAACGCCCGCGCCCggggggg > 1:900048/1‑238 (MQ=255)
cGCAGTACGGCGGTGGCATTGTCCAGGGTTCAGCCGGGGTCCGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGCGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAC‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCt < 1:517226/238‑1 (MQ=255)
ccAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTg < 2:124016/239‑1 (MQ=37)
tCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:651648/239‑1 (MQ=37)
tCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:878114/239‑1 (MQ=37)
tCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:774653/239‑1 (MQ=37)
tCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 2:900048/239‑1 (MQ=37)
tCAGCCGGGGTACGCATCGGGGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat < 1:1176948/239‑1 (MQ=37)
aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCCG‑TTACCGGCCCAAAACCCCCGCGCCGGGGGGGGGCCTCGGCCCCCGCTGGAAAATGCCCGCgggtctc > 1:54128/1‑233 (MQ=11)
aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGGCCTTCCCGGTGCAA‑ACGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCCG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGCAAATGCCTGCCGataac > 1:305124/1‑236 (MQ=255)
aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGGCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGCTCATTCTCTCCCGCCCCCACAGCGG‑TTCCCGGACCAAAACGCCCCCCCCGGCTGGGTGCCTCCGGCCCTGCCGGaccatccctcctgtgatc > 1:870381/1‑221 (MQ=11)
aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCCGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACCACTCCCTGCCCGGCCCGCTCCCGTTCATTCTCTCCCGCCCCTCCAACCG‑TTCACCGACAAAAACCCCCCCCCCGGTCGGGAGCCTCCGCCCCGGCGGGAAAATGCCTGCGGATATc > 1:446632/1‑238 (MQ=11)
gTACGCATCGGTGCCCCCACCGGCGTGCCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCAGCCATCCGGACAAA‑CCGCTGCTCGGCGCAAAGGGACTTCCCGGCGAAA‑CCGACAACGCCCTGCCCGGCCCGCCACCCTTCCTTCGCCCCCGCCCCTACATCAG‑TTCCCGCGCAAAAACGCCCCCGCCGGCGGGGCGACTGGGCCCCGGGTGGGCAATGCATGCGGactgccccttgt > 1:961750/1‑227 (MQ=255)
gCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTg < 2:1047796/239‑1 (MQ=35)
gCAGCGGGGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTg < 2:661519/239‑1 (MQ=21)
acagggTGCCCCCACGGGCGTGGCCTGTTCGGGGTGCCCAGGCTGGGTGACGTCCGGCCAGCCGGTCAAC‑CCGCTGGTCGGTGCAAAGGTCCTTCCCGGTGAGA‑CCGACATCGCCCTGCCAAGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGGGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTg < 1:832383/234‑1 (MQ=11)
tgcGGGGCCCCCACCGGCGGGGCCTGTTCGGGGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTgcg < 1:516107/237‑1 (MQ=21)
tGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGGGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGGGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGCGCTCCGCTTCCAGCTGCGCGGTa > 2:616177/1‑239 (MQ=11)
gCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATaa < 2:788305/239‑1 (MQ=33)
ccccccccGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATaa < 2:305124/238‑1 (MQ=18)
cccccACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATaa < 1:275946/238‑1 (MQ=33)
ccccACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAaca < 2:414813/239‑1 (MQ=33)
ccACCGGCGGGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAacaca < 1:199540/239‑1 (MQ=18)
caaCCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAacaca < 2:446632/237‑1 (MQ=18)
gTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACt < 2:1071136/239‑1 (MQ=33)
tGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACt < 2:926453/238‑1 (MQ=33)
tgtgCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAAcggc > 2:1059852/1‑239 (MQ=33)
|
TTTCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAAT‑CCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAA‑CCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAG‑TTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGC > NC_000913/729475‑729933
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
