Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F9 I0 R1 103 124.7 2465218 97.5% 2403587 230.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,555,120 A→G 11.5% I182V (ATC→GTC)  uxuR → fructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,555,1200AG11.5% 231.2 / 4.7 88I182V (ATC→GTC) uxuRfructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor
Reads supporting (aligned to +/- strand):  ref base A (15/60);  new base G (9/2);  total (26/62)
Fisher's exact test for biased strand distribution p-value = 1.06e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGTTATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTAT  >  NC_000913/4554883‑4555358
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                               
gaGTTATTGGAGAGTAACATCGCCGAGTTTGCCGCTTTGCAGGCTAACCGCGGAGATATCGGCACAATGCGTCAGGCAGTTCAACTGGAAGAGCGTGAACTTGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGAGATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACTATACAATGTGGa                                                                                                                                                                                                                                                 <  1:150515/237‑1 (MQ=255)
cAGTTATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGa                                                                                                                                                                                                                                                 <  2:673486/238‑1 (MQ=255)
cAGTTATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGa                                                                                                                                                                                                                                                 <  2:371072/238‑1 (MQ=255)
    tATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATc                                                                                                                                                                                                                                               <  1:532211/236‑1 (MQ=255)
          agagCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGca                                                                                                                                                                                                                                       <  2:688750/238‑1 (MQ=255)
            agCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTAGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAAAAATACAATGTGGATCCCGTTGcacc                                                                                                                                                                                                                                     >  2:569431/1‑237 (MQ=255)
             gCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACCAACCCATGTGGTTCACGTTGCACAg                                                                                                                                                                                                                                    >  2:165889/1‑238 (MQ=255)
               aaCATCGCCGAGTTTGCCGTGTTGCAGGCTACCCGCGAAGATAACGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCGTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGcc                                                                                                                                                                                                                                  <  2:3231/238‑1 (MQ=255)
               aaCATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGcc                                                                                                                                                                                                                                  <  2:574319/238‑1 (MQ=255)
               aaCATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGcc                                                                                                                                                                                                                                  <  2:424760/238‑1 (MQ=255)
               aaCATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGcc                                                                                                                                                                                                                                  <  2:748146/238‑1 (MQ=255)
                aCATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCAt                                                                                                                                                                                                                                <  1:378206/239‑1 (MQ=255)
                   tCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTg                                                                                                                                                                                                                             <  2:519462/239‑1 (MQ=255)
                        gAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGGCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGa                                                                                                                                                                                                                        <  1:374859/239‑1 (MQ=255)
                           tttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACa                                                                                                                                                                                                                      <  1:914783/238‑1 (MQ=255)
                            ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACa                                                                                                                                                                                                                      <  1:630860/237‑1 (MQ=255)
                            ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGc                                                                                                                                                                                                                    <  2:713959/239‑1 (MQ=255)
                            ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGc                                                                                                                                                                                                                    <  2:81931/239‑1 (MQ=255)
                            ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGc                                                                                                                                                                                                                    <  2:103827/239‑1 (MQ=255)
                            ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGc                                                                                                                                                                                                                    <  1:1143301/239‑1 (MQ=255)
                            ttGCCGCCTTGCAGGCTACCCGCGAAGATATGGTCAAAATGCGTCAGGAATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCAGAACAGCATGCTGGTGGAGCTGTTCCGGCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGAACAGCCATCTGGATGACAGc                                                                                                                                                                                                                    <  1:1166236/239‑1 (MQ=255)
                            tgtccGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGc                                                                                                                                                                                                                    <  1:1190793/236‑1 (MQ=255)
                              gCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTGCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCt                                                                                                                                                                                                                  <  2:200403/239‑1 (MQ=255)
                                   tttGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATc                                                                                                                                                                                                             <  1:874651/239‑1 (MQ=255)
                                           cTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCaaa                                                                                                                                                                                                        <  2:511970/236‑1 (MQ=255)
                                           cTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCaaa                                                                                                                                                                                                        <  1:107266/236‑1 (MQ=255)
                                           cTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACGGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAaga                                                                                                                                                                                                      <  1:1065529/238‑1 (MQ=255)
                                           cTACCCGCGAAGATATCGTCAAAATGCGGCAGGCATTGCAACTGGAAGAGCGTGAACTGGATTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCaaa                                                                                                                                                                                                        <  1:209889/236‑1 (MQ=255)
                                              cccGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAAAAATCCAATGTGGAGCCAGTTGCCCAGCCATCTTGATGACAGCCTGTATCGCAAAGAGAgg                                                                                                                                                                                                  >  2:862689/1‑239 (MQ=255)
                                                   gAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTggg                                                                                                                                                                                             <  2:733283/239‑1 (MQ=255)
                                                    aaGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAACAATCCAATGTGGAGCCAGTTGCACAGCCATCTGGGTGACAGACTGTCTTGCCAAGAGGGGGTGGGc                                                                                                                                                                                            >  2:321775/1‑239 (MQ=255)
                                                        tatCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATc                                                                                                                                                                                        <  1:349198/239‑1 (MQ=255)
                                                        tatCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAAAAATCCAATAGTGAGCCAGTTGGACCACCATCATGAGGAGAGGCTGTAACACCAAGAGGTGTGGGGGGAt                                                                                                                                                                                         >  1:1068223/1‑238 (MQ=255)
                                                                       tCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGTAAAACAATCCCACGTGGATGCCGCTGAACCACCACCAGGATGGCAGCCTGTATCGCAAAGAGTGGTCGGGCGCACCCAAA‑CAGATACTc                                                                                                                                                                         >  1:1100667/1‑238 (MQ=255)
                                                                             aTTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCcgcg                                                                                                                                                                   <  2:230115/238‑1 (MQ=255)
                                                                              ttGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAACAAACCACAGTGGATCCCGTTGCCCAACCCTCCGGGTTGCAGCCCGTATCCCCAAGAGTGGGTTGGCGAGCACACA‑AAGATCCTcgccgccgt                                                                                                                                                                 >  1:172479/1‑236 (MQ=255)
                                                                               tGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCCATGTGGAGCCAGTTGCCCAACCACCTGGGAGAGAACCTCTATAGCAAAGAGGGGTTTGGGGGTCACAAA‑AAAAAccccgccccggct                                                                                                                                                                >  1:1141169/1‑236 (MQ=255)
                                                                                    cTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAAAAAACCAATTTGGGTCCCAGTGCACCGCCCACTGGCTGACAGCCTGTATTGCAAAAAGTGGGTTGGCGGGCAAAAA‑CACATCCTccgccccgcaactaa                                                                                                                                                           >  1:979311/1‑225 (MQ=255)
                                                                                     tGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGGACCAGGTGCACAGCCATCTGGGTGACAGCCTGTATCGCAAAGAGTGGGTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCaaa                                                                                                                                                          >  2:173153/1‑239 (MQ=255)
                                                                                         agagCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAACAAACCCATGTGGCGCCAGATGGCCAGCCCCATGGCTGACACCCTGTAATGCAAGGAGGGGATGGGCGATCACAAA‑ACACTACCCGCCGCGCTAAACaaaaaaa                                                                                                                                                      >  1:358511/1‑238 (MQ=255)
                                                                                           agCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAACAATCCTCTATGGAGCCACGTGTACCGCCCTCTGGGAGGCATACTTGATTGCAAAGAGGGGTTTGGGGGTTACAAACCAGGT‑CTCTCCGCGTTATGCaaaaaaaaa                                                                                                                                                    >  1:564404/1‑236 (MQ=255)
                                                                                               tGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAAAAAACCAAAATGGGTCCAGGTGCACAGCCATCTGGGTGACAGCCTGTATCGCAAAGAGGGGTTGGGGGGTCACAAA‑CAGATACTCCCCCCGCTAATAAAACAAAAAGcc                                                                                                                                                 >  1:392998/1‑238 (MQ=255)
                                                                                                 aaCTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAACAATCCCATATGGATCCAGTTGCACAACCAACTTGGTGAGCACCTGTATCGCCAAGAGGGGGTGGGGGATCACAAA‑CAGAACCCCGCCGCGGTAATCaaaaaaaaaaccccc                                                                                                                                              >  1:1061089/1‑230 (MQ=255)
                                                                                                 aaCTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCCATGTGGGTCCAGTTGCACAGCCATCTGGATGACAGCCTGGATCGCAAAGAGTGGGTGGGGGGTCACAAA‑AAGATCCTCGCCGCGTTAATCAAAAAAAAAGcccca                                                                                                                                              >  2:329212/1‑237 (MQ=255)
                                                                                                        ttCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGa                                                                                                                                       <  2:69515/239‑1 (MQ=255)
                                                                                                                cgcCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAAACCAAAGTGGGTCCAGGTGCACAGCCACCTGGGTGACAGCCTGTATCGCAAAGAGGGGGTGGGCGGTCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAAAGGCCCGAGCGGCGAAGCTgggg                                                                                                                               >  2:87609/1‑237 (MQ=255)
                                                                                                                 gcCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCa                                                                                                                               <  1:221535/238‑1 (MQ=255)
                                                                                                                              gAAAACGGTGACATGCAGTACCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGGGGAGCTCTTCCGTCAGGCCTGGCAGTGGCGAGAAAACAATCCAATGTTGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTTGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGgcagca                                                                                                                    <  1:437960/236‑1 (MQ=255)
                                                                                                                                   cGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCAt                                                                                                                   <  2:436582/232‑1 (MQ=255)
                                                                                                                                     gTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAAACCAAAGAGGATCCAGTGGGACATCCACCTGGGGGATAGCCAGTATCCGGAAAAGAGGGTGGGGGGTGAAAAC‑AAGAACTTCCCCGCGTGAATCAAAAAAAAGGCGCGAGCGGCGACGATCGCAACGTGgcagagtatggagaaa                                                                                                          >  1:420864/1‑227 (MQ=255)
                                                                                                                                                ttCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGGTCCCGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGGGGGTGGGCGGTCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAAATGCCCGGGCGGCGAAGCTGGCAAAGTGGCCGCATCTTGAAAACGGTAAGCAACg                                                                                               >  2:392034/1‑239 (MQ=255)
                                                                                                                                                  ccATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGGTGCACAGCCCTCTGGATGACAGCCTGTATCGCAAAGAGGGGTTGGGCGGTCACAAA‑CAAATCCTCGCCGCGGTTATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCGATGTGGCAGCATCTGGAAAACGGTAAGAAACg                                                                                               >  2:289793/1‑237 (MQ=255)
                                                                                                                                                           tATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGaa                                                                                     <  2:496629/238‑1 (MQ=255)
                                                                                                                                                           tATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGaa                                                                                     <  1:421725/238‑1 (MQ=255)
                                                                                                                                                           tATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGAGCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGaa                                                                                     <  1:607620/238‑1 (MQ=255)
                                                                                                                                                             ttGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAAAAATCCAATGTGGATCCAGTTTCACAGCCATCTGGATGAAAACCTGTATCGCAAAGAGAGGGTGGGGGGTCACCAA‑AAGAACCTCCCCCCGTTACTCAAAAAAAAAGGCCCGGCGGCGAAGATGGCAAATTGGGCGCATCTTGAAAACGTTTAGCAACGTCTGCTGGAAt                                                                                    >  1:347407/1‑237 (MQ=255)
                                                                                                                                                                 cGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCg                                                                               <  1:872236/238‑1 (MQ=255)
                                                                                                                                                                        aCGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGa                                                                       <  1:554180/239‑1 (MQ=255)
                                                                                                                                                                        aCGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGa                                                                       <  2:172479/239‑1 (MQ=255)
                                                                                                                                                                         cGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACCATACCATGTGGGTCCCGTTGCACAGCCCTCCGGGTGACAGACTGTATCGCAAAGAGGGGTTGGGCGAACCAAAA‑CACATCCTCGCCCCCGTTATCAAAAAAAATGCCCGCGCGGCGGAACTGGACCTGGGGCAGACACCGGAAAAACTTAAGAAACGGCTGCTGGAGATCTCGAACGtctgc                                                                      >  1:750899/1‑235 (MQ=255)
                                                                                                                                                                         cGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGAc                                                                      <  2:979311/239‑1 (MQ=255)
                                                                                                                                                                          gCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGGTCCAGTTGCCCAGCCATCTGGGGGAACGCCTGTATCGCAAAGAGGGGTTGGGGGATCAAAAA‑AAGATCCTCCCCGCGTTGATTAAAAAAGAAGCCCGCGAGGCGAAGATGGCCATGTGGCAGCATCTGGGAAACGTTTAACAACGGCCGCTGGAATTCTCGGAccgtggcg                                                                     >  1:399780/1‑232 (MQ=255)
                                                                                                                                                                          gCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACg                                                                     <  2:1122297/239‑1 (MQ=255)
                                                                                                                                                                              aaCAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCCATGTGGATCCCGTTGCACCGCCCTCTGGGTGACAGCCTGTATCGCCAAGAGGGGTTGGGCGATCACAAA‑ACGATCCTCGCCGCGTTAATCAAAAAAGATGGCCGAGCGGCGAAGCTGGCCAGGTGGCCGCATCTGGCAAAAGGTAAGGAACGGCTGCCGGGAGTTTCGAAAGTTGCCGgtat                                                                 >  1:522177/1‑239 (MQ=255)
                                                                                                                                                                                    aTGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATatttattt                                                           <  2:1141169/239‑1 (MQ=255)
                                                                                                                                                                                      gCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGGTGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTg                                                         <  1:5275/239‑1 (MQ=255)
                                                                                                                                                                                        tggtggAGCTGTTCCGTCAGTCCGGGCAGTGGCGGGAAAACAATCAAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGAt                                                       <  1:1083509/239‑1 (MQ=255)
                                                                                                                                                                                          gtggAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAAAAATCCAAAGTGGGTCCAGGTGCACAGCCCTATGGGGGACAGCCCGTATCCCAAAGAGTGGGTGGGCGGTCACAAA‑AAGAACCTCGCCGCGTTAATCAAAAAAAAAGCCCGAGCGGCGAAGCTGGGCATGGGGCAGCATCTTGAAAAAGGTAAGCAACACCTGCGGGGAATTTCGCACGCTTACGGTATTTATTTTTAttg                                                     >  1:893610/1‑237 (MQ=255)
                                                                                                                                                                                            ggAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCt                                                   <  2:420864/239‑1 (MQ=255)
                                                                                                                                                                                             gAGCTGTTCCTTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCt                                                   <  1:395879/238‑1 (MQ=255)
                                                                                                                                                                                               gcggTTCCGGAAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTAt                                                 <  1:348879/235‑1 (MQ=255)
                                                                                                                                                                                                    tCCGTCAGTTCTGGCAGTGGCGAGAAATCAATCCAATGTTGATCCAGTTGCACAGCCATCTGGATTACAACCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAATCGTTAAGCAACGTCTGCTGGAATTCTCGAGCGTTGACGATATTTATTTTGATGGCTATCTGtt                                            <  1:616112/238‑1 (MQ=255)
                                                                                                                                                                                                    tCCGTCAGTCCTGGCAGTGGCGTGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGAGGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGtt                                            <  1:159403/238‑1 (MQ=255)
                                                                                                                                                                                                                ggCGGTGGCGGGAAAACAATCGAATGTGGAGCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCACCGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCg                               <  1:1123407/239‑1 (MQ=255)
                                                                                                                                                                                                                ggCAGTGGCGGGAAAGCAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCg                               <  2:330565/239‑1 (MQ=255)
                                                                                                                                                                                                                ggCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCg                               <  2:384336/239‑1 (MQ=255)
                                                                                                                                                                                                                ggCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCg                               <  2:714443/239‑1 (MQ=255)
                                                                                                                                                                                                                        cGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATa                        <  1:87609/238‑1 (MQ=255)
                                                                                                                                                                                                                        cGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATa                        <  2:786691/238‑1 (MQ=255)
                                                                                                                                                                                                                        cGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATa                        <  2:358511/238‑1 (MQ=255)
                                                                                                                                                                                                                                 aaTCCAATGTGGATCCAGTTGCACAGCCATCTGGATGCCAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGc              <  1:994793/239‑1 (MQ=255)
                                                                                                                                                                                                                                 aaTCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACg               >  2:461664/1‑238 (MQ=255)
                                                                                                                                                                                                                                 aaTCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGc              <  2:211161/239‑1 (MQ=255)
                                                                                                                                                                                                                                  aaccAATGTGGGTCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGGCCGGGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGGTTGATTCATGGCCGCTGGATAAAGTCGACGcc             <  1:160876/237‑1 (MQ=255)
                                                                                                                                                                                                                                  aTCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGcc             <  1:750282/239‑1 (MQ=255)
                                                                                                                                                                                                                                  aTCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGcc             <  1:862689/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aaTGTGGGTCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGAc         <  2:671760/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aaTGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGAc         <  2:1030448/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aaTGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGAc         <  1:177853/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aaTGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGAc         <  2:543954/239‑1 (MQ=255)
                                                                                                                                                                                                                                        tgtgGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACtt       >  1:1130063/1‑239 (MQ=255)
                                                                                                                                                                                                                                             aTCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTc                                                                                             >  2:755650/1‑148 (MQ=255)
                                                                                                                                                                                                                                             aTCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTc                                                                                             <  1:755650/148‑1 (MQ=255)
                                                                                                                                                                                                                                             aTCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCTACGCCTGACTtattat  >  1:291765/1‑239 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                               
CAGTTATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGAAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAGTGGTTGGGCGATCACAAA‑CAGATCCTCGCCGCGTTAATCAAAAAAGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTAT  >  NC_000913/4554883‑4555358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A