Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 811,721 T→G 24.7% V67G (GTG→GGG)  bioC → malonyl‑ACP O‑methyltransferase, SAM‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913811,7210TG24.7% 78.2 / 3.0 42V67G (GTG→GGG) bioCmalonyl‑ACP O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base T (7/22);  new base G (9/3);  total (17/25)
Fisher's exact test for biased strand distribution p-value = 4.31e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCA  >  NC_000913/811484‑811949
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                       
tgggaggaaGGATATCGACCGTCTGGTGGGGGTGCTGCAGGGCAACGGTTAATAACCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACCC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTg                                                                                                                                                                                                                                        <  2:759186/231‑1 (MQ=255)
 tatacgCAGGATCTCCACCGTCGGGTGGGGGTGCGGCTGGGAACCGTTTAAAAAACAAGCCCTGGCGGGGGCATTTGGGCGGGGAGCCCCACAC‑TATGAGCAACCTGCAGAT‑TTACAGCCCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATCCCCCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGa                                                                                                                                                                                                                                       <  1:1203913/234‑1 (MQ=255)
   aaggCAGGATATGCACCGTCGGCGGGGGGGTCGGCAAGGAAACGGTTAATAAACAAGCCATGGCAGCGGCATTTGGGCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCCCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAATTCCACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑g                                                                                                                                                                                                                                    <  2:78180/236‑1 (MQ=255)
   aaggCAGGATAGCGCCCGTCTGCTGGGGGTGCTGCATGGCAACGGTTAAAAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGa                                                                                                                                                                                                                                       <  2:1025563/234‑1 (MQ=255)
   aaggCAGGATACGGACCGTCGGCGGGAGGTGCTGCATGGAAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAc                                                                                                                                                                                                                                      <  2:430331/235‑1 (MQ=255)
           atagggACCGTTTGCTGGGGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGa                                                                                                                                                                                                                                       <  2:766952/224‑1 (MQ=255)
                    gTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGGCGCGCG‑CCAGTGGC‑GGccccgtctcttataca                                                                                                                                                                                                                   >  2:821719/1‑225 (MQ=255)
                     tCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTTTGGACC‑TGGCTGGCTGAGCCGCCACCGGCGGGACCGCCACCCGCCCGGGGCC‑GGCCTTAGAttctccttt                                                                                                                                                                                                                   >  1:766952/1‑231 (MQ=255)
                      ctgctgGAGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGGGAC‑GGCCCTAGATCTCTccccg                                                                                                                                                                                                                  >  2:1018047/1‑238 (MQ=255)
                      ctgctgGAGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGG‑GACAGGCCCTTGATCTCTcgccc                                                                                                                                                                                                                  >  2:1074750/1‑237 (MQ=255)
                                 gctgcATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAAAGGCACGCG‑CCGGGGAC‑GGGCTTTGATCTCTCGCCGCCAAAGCTTGt                                                                                                                                                                                                       >  2:1201345/1‑238 (MQ=255)
                                 gctgcATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAACCGCCACTGGCGGGAAAGTCACGGG‑CGGGGCAA‑GGCCGTTAAACTCCCGCCGCCAAGGCtgtgt                                                                                                                                                                                                      >  1:1315449/1‑235 (MQ=255)
                                     cgtgacAACGTTTAAAAAACAAGCCATGGAGGGGGGTTTGGGTGGGGCAGCCG‑ACACATATGGGAAAACAGGAGAC‑TTACAGCGCCAGGGTGCTGACGCTTTCCTGGCAATGTTTCCAAGGCGTAAATACCCCCACGTACTGGACGGGGGTTGTGGACC‑GGGCTGGATGGGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAgg                                                                                                                                                                                                  <  1:727209/234‑1 (MQ=255)
                                      aTGGCAACGGTTAATAACCAAGCCATTGCCGCGGCATTTGGTCGGGCAGCCGCACCC‑TATGACCAACATGCAGAT‑CTACGGCGCCAGAGTGCTTACCCCTTACTGGCAATGCTTCCACAGCGTAAATACCCCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGAGGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAgg                                                                                                                                                                                                  <  2:320625/238‑1 (MQ=255)
                                               gTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGGACGGCACGCC‑CAGGGGAC‑GGCCCTAGATCTCTCCCCGCCAATGCTTTTTCAGGCACGcccaaa                                                                                                                                                                                        >  2:147538/1‑235 (MQ=255)
                                                        cAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCCCCCG‑CCGGGGAG‑GGCCTTATGTTCCTCGCCCCCCACGCTTGttttgcgacgcgcgaaaggaacggc                                                                                                                                                                               >  1:1050590/1‑216 (MQ=255)
                                                         cagccttgtcggggggttttGGGCGGGCGCCCCCACCC‑TTAGAGAAACCTGGAGAT‑CCACAGGGCCAGTGGGCTGACGCTTACCGGGCAATGCTTCCACAGCGTAAATACCCCCCGGTCCTGGACGGGGGTTGGGGACC‑TGGGTGGATGGGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCa                                                                                                                                                                              <  1:1074750/222‑1 (MQ=255)
                                                         aaGCCATTGCAGGGGCTTTTGGTCGGGCAGCCCCACAC‑TATGAGCAACATGCAGTT‑CTAAAGCGCCAGAGGCCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATCCCCCCACGTACTGGACGGGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCa                                                                                                                                                                              <  2:18854/239‑1 (MQ=255)
                                                          aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAAAGTTACGCG‑CCGGTGAC‑GGGCGTAGATCTCTCGCCGCCCAAGCCTGTTCAGGCGCGCCCGAAGGGTGCCCCa                                                                                                                                                                              >  2:181874/1‑238 (MQ=255)
                                                          aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAAAGGCCCGCG‑CACGGGGC‑GGGCTTAGATTTCTCCCCGCCCAGGCCTGTTCGGGGCCCCCAGAAGGAGGCCGCa                                                                                                                                                                              >  2:96491/1‑238 (MQ=255)
                                                                   aGCGGCATTTGGCCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACCCCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTAt                                                                                                                                                                    <  2:149655/238‑1 (MQ=255)
                                                                     cGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGAGCTCTCGCCGCCAATGCTTGTTTAGGCACGCCAGAAAGATGCCGCGGA‑CCCTTATCTg                                                                                                                                                                 >  2:851464/1‑239 (MQ=255)
                                                                       ggttttGGTGGGGACCCCGCACAC‑TGTGAGCAAACTG‑ACATCCTCGAGCGCAGGGGTGCTCACGCCTGCGTGGCAATGCTCCACCAGCGAAAATCCCCCCGGGTGCGGGACGGGTGTGGGGGACC‑GGGCGGGATGAGCCGCCCCGGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTgg                                                                                                                                                                <  1:908493/235‑1 (MQ=255)
                                                                          tttGGTCGGGCAGCCCCACAC‑TGTGAGCAACATGCAGAT‑CTCCAGCGCCAGAGGTCTGCCGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTCCGGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCggg                                                                                                                                                            <  2:871712/239‑1 (MQ=255)
                                                                                   gCAGCCGCCCAC‑TATGAGAAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACGGGCAATGCTTCCACAGCGTAAATCCACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCg                                                                                                                                                    <  2:451143/238‑1 (MQ=255)
                                                                                                          aTGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCCCGCG‑CAGGTGAC‑GGCCCTAGa                                                                                                                                                                                                                            >  2:363828/1‑145 (MQ=255)
                                                                                                          aTGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGGCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGAAGCCGCAGA‑CCATTATTCGCGGGGAGATATCGAATCCCTGCCGTTAGCGACTggg                                                                                                                             >  2:684784/1‑237 (MQ=255)
                                                                                                                           ccAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCGTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCCTTATCCTGCGGGGGATATTGAATACCCGCCGTTAGCGACTGCGACGGTCGATCttt                                                                                                                >  2:178411/1‑235 (MQ=255)
                                                                                                                            cggagTGCTGACGCCTTCCTGGCAATGCTTCCACCGCGTAAATACACCCACGTACGGAGCGCGGGTTGTGGACC‑TGGCTGATTGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGa                                                                                                                                                                                                                                       <  2:1088639/116‑1 (MQ=255)
                                                                                                                                     gACCCCTTACGGGAATTGCTCCCCCGGCGTAAATACCCCCACGTCCGGGCCGCGGTTTGTGGCCC‑TGGCGGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCCCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAAtct                                                                                                   <  2:1050590/239‑1 (MQ=255)
                                                                                                                                                  cAATGCTCCCCAGGCTTAAATCCACCCACGTACGGGACG‑GGGTTGGGGGCCGGGGCTGGATGGGCCGCCCCTGGCGGGAACGTCCCGCG‑AAGGTGAC‑GGCTTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGcagtgcagtg                                                                                       <  2:874201/238‑1 (MQ=255)
                                                                                                                                                                cGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGGGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGGGATATCGAATCCCTGCCGTTAGCGGCAGCGACGTTCGATCTTGCATGGGGCAATCTCCCAGTGCAGCGGGGGGGT‑GATTTAt                                                                        >  2:954520/1‑238 (MQ=255)
                                                                                                                                                                    aaTACACCCACGTACGGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCa                                                                                                                                                                              <  2:253015/134‑1 (MQ=255)
                                                                                                                                                                           cccggTACGGGCCGCGGGTTGGGGACC‑GGGTGGGAGGACCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTcc                                                            <  2:1156628/235‑1 (MQ=255)
                                                                                                                                                                             aCGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTGACGCG‑CAGGGTAC‑CGCCTTAGATCTCCCCCCGCCAAACCTTTGTCAGGCCCGCCCGAAGGGTTGCCCAGACCCATTA‑CTGGCGGGGGGTATCCAAACCCCGCCGCTAGCGAGCGCCACACTCTGTCTTTCATGGAGCGATACCACAGAGGAGCGGGGCGGTAAATTTAtacccaacacaccg                                                           >  1:160577/1‑226 (MQ=255)
                                                                                                                                                                                 gcgggccggggtttGTGGCAC‑TGGTGGGAGGCGCCCCCACTGGCGGGAACGTCACGGG‑CAGGTGAC‑GGCCTTAGATCCCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAg                                                       <  2:461819/226‑1 (MQ=255)
                                                                                                                                                                                 acggggcggggggTGGGGCCC‑TGGCTGGTTGAGCCCCCACGGGGGGGACCGTCACGCG‑AAGGGGAC‑GGCTTTAGATCTCCCGCCGCCAATGCTTGTTCAGGCCCGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAg                                                       <  2:767879/229‑1 (MQ=255)
                                                                                                                                                                                                tggcgcggggggggggggcccgccACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGgtggtg                                        <  2:430605/220‑1 (MQ=255)
                                                                                                                                                                                                   gcccgggggggagggcccgccACTGGCGGGAACGTCACGCG‑CAGGGGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCGGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTgcg                                      <  2:935938/222‑1 (MQ=255)
                                                                                                                                                                                                                                gAACGTCCCGGG‑AGGGGGAG‑GGCTTTAGACCTCTCGCCGCCAATGGTTGTGCAGGCCCGCCAGAAGGATGCCGCAGA‑CCATTAGCTGGGGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGc         <  2:595960/238‑1 (MQ=255)
                                                                                                                                                                                                                                    gTCACGCG‑CAGGTGCC‑GGCCTTAGATCTCTCGCCGCCAATCCTTGTTCAGGCCCGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCaa                                <  2:607673/211‑1 (MQ=255)
                                                                                                                                                                                                                                      cACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGGGGGCGCGTTTACCACGCTGGTGCa  >  2:692477/1‑239 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                       
TGAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACAC‑TATGAGCAACATGCAGAT‑CTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC‑TGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCG‑CAGGTGAC‑GGCCTTAGATCTCTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGA‑CCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGT‑AATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCA  >  NC_000913/811484‑811949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A